Gene detail

Detailed information of Acti_012616-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_012616-T1	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	ScLC4GM_578	114239169	114260731	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_012616-T1

GTACACAGCCTGTACTCGGGCTGTATGTTAATCAAACAGACAATGTAGATACTTCATATGGCATTTACCCAATGATCGGATACATACAGTACTGACCTGTCTCAATCTATTCAATCTCTAAACCTGAAGAAGGCTAGAATACAGTGTGTAATTAGAGGGCACTTTAAAGAAAAAGGAGTGTGGAGTGCCCTTTCATTTAGGCCTAGCTATAGACACTTATTTTGTGCTATTATATCTCAGAGAGGTCCAGAAGAAGTGCAAGTCTCGTGATGCTGCAAGGTCCAGGAGGGGACAGCAAAATGATGAATTTACTGAGCTATCACACCAGCTCCCACTCCCTAAATCTATCTCAGGGCAGCTGGATCGTCTGTGCATCATGCGACTTACAAATAGCTACATCAAGATCAAGAAACTTTTGGGTTCTATGATGAATCAGGATGTGAAGCAAGTAGTTGCATTGAATATTGATGATTCGTCTGTGTATGACCGTGAAACCCTGAAGGCGATGGATGGCTTTATCTATGTTGCTGCCCAAGATGGACAGTGTCTGTACGTTTCTGACAATGTCACTCACTACATGGGCCTGTCGCAGATTGAGGTGACTGGGAACAGTCTATACAAGTATGTACACCCATGCGACCACGAGGAGCTTGCAAACCAACTAGGTGGCCGTATTCCACTTGAAGACATGGAAATTTTCGATGGCCTGTTCTGCTCTGATTCAGTCTTTATGATGAGCAACAATCTGAAAGGTGGATCCAAGCGCAATGAGAATGGAAGTCAATACAAGTCATTCTTCCTTCGCATGAAGAGCACACTGACAAGCAAAGGAAAAAATGTTAATTTGAGAGCATCAACGTACAGAGTGGTTCACTGCACTGGAAGCATGAAATACAAAACAACAATCAATGACAAGGGGCAAGAAGAGAAGAAACCCCTGTTCTTGGTTGCCATTGCTGTTCCTCTCATGTTTGCAACAACATTCGAGGTTCCTCTTGACAGAGGGACATTTTCTAGTCGGCACATGTTAGACATGAAATTCCTACAGTGTGATGACAGGGTCAGCGACCTCCTTGGTTATTCAAAAGAAGAAATGATTGGAAAATCCTGGTATAGTTTTCACCATGCTGCAGATCTGGAAAATGTTCTGGCAACACACAAGCTGTTACTTACCAAGGGTCAGGCGGTGAGCAAGTATTACCGATTCCTTGTGCGAGATGGTGGATGGGTTTGGCTACAAACTAAAGCTCATGTTGTTTATGACAGTAAAACGTGCCAGCCAGAGTTTGTCATCTGTATCAACTATGTTCTGGGTGGAAAACAAAACACTTCAGCAGTGCTGACATCGGAACAAATCAACCCTGTCCCTAGTGCTCTTGCACTGGAAACCACCATCAAAACAGAAACGACTGTGCCAAACGGCAAGCGCAGAAAGGACTCCATCGTTTACGAAGAACAGTCCAAGGCCAGGAAGGCCCTCACCAAGAATGAGGACCACATTGTCCCGAAGAAGGAGCCAGGATTCTCAAGCTGTAAAGTCAAGACTGAACCAGTCAAGACGGACTGCCTGGGCATCGCGATCGACTGCGAGCATATCAATTTCCAAGAATGCTTCCCAGTTTCGTGGGAGGATGTTATCCAACAACAGGAAGAGTACGACCAGCATACCTGGGATCACTATAGTAACTATGACATGGATACACCGCTGGCCTCACCAGTGCAAGGTGACGACAGTGAAACCGTCAAGACAAGCTCCTCAGACATGGAGCTGGAAGATATCAAGGACGAAGACAAGGCTGTGATGACTGAAGATGAGAATGTAGACCTCCATGATCGCGCCCCATTCATCCCACCACCGTTCGTAGATGCAGGGCTTATGTGTGATGATGAGTTGCTTGCAGACATCTCCTTCGCAGACTCCCCTATCGCCATTCCATCCTGGCTAGATGGTGATGAGCTCCTGTTGCTAGACTCCAAGTTTACTTTTCCATCAACAGCTAAAGTCTCAACACCTTACAAAAGCCTATCTGCGTTTTCCTCGCCTGTATTTACGAGAAAGCAAGTCCCGGAGAGTATCAGGAGGAATGGATACATCACGAACGAACTTTTGAGTGGCGGCAAAGCGCTGTTTCCATACGTGACCCAAACCGAGGCTGAGGTCAACGCACCAGTGCAATCGAGCAATCTGTTGCAAGGAGAGGATCTGCTCATTGCACTAGACCAAGTCACTGGTGACATCAACCAAGATTTCTTATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00989	PAS	PAS fold	Domain	Interproscan
PF08778	HIF-1a_CTAD	HIF-1 alpha C terminal transactivation domain	Domain	Interproscan
PF14598	PAS_11	PAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR001067	Family	Nuclear translocator	Interproscan
IPR001610	Repeat	PAC motif	Interproscan
IPR013767	Domain	PAS fold	Interproscan
IPR014887	Domain	HIF-1 alpha, C-terminal transactivation domain	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-