Gene detail

Detailed information of Acti_008183-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_008183-T1	TRANSCRIPTION ELONGATION REGULATOR 1	ScLC4GM_578	6146926	6211108	-

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_008183-T1

ATGATCATGAATTCGGATGTTCTATTAGAAGTACAGTACGATTATCTGTTCAAAATTCTACTCATCGGGGACTCTGGTGTCGGAAAATCATGCCTCCTTCTTCGATTCGTCGACAACACCCACAGAGAAAGTTACCTAAGCACTATCGGCGTGGATTTCAAAATAAAAACTCTCAACGTGGATGGGAAAGTCGTGAAGCTACAAATCTGGGACACAGCTGGACAAGAGAGATTTCGAACAATAACATCATCATACTACAGAGGAGCGCATGGAGTGATGATTGTGTACGACATAACAAAGAAAGAAACTTACAACAACCTTCACAAATGGCTAATAGAAGTAGAAACATATGCCGCCGAGGGAGTTTTGATGATTTTAGTTGGAAATAAAATTGATTTGGACTGTGACCGAGAGGTAACAAAAGAAACTGCGATGGAATGGGCAGCATTACATGATATGCCATTTGTGGAAACAAGTGCGAAGGATTCTAAAGAAGCAGATCCACCATATATTCATCACTGTCCCAAAACATTGAAGATGAGGGCAGGAGTGCCACCACTAATGGGCTCCAGGGGTATGCCTCCCAACACGACGAGGCCACCTATGGGCGGGGGTGGACCAGTATTGAGGGGTTCCCTCCTAGGTCAACCTCCTGGAGGCTTTCCTAGGCCACCGTTTGATGCTAGAGGAATGATGATGCCCAGTATGAGAGGGCAAATGATGCCGACAAATATGCTGGGTGCCAGACCACTGCTACCCAACCCCATGCTTGGAATACCTAACCAGCACGGCCCAGTACCAATGGGACTACAGCCTCCTCCAGCACCACCTATGATTGATGCTAATGGTGACATGTGGCTGGAGCATAAAACACCTGAAGGGAAGTCATATTATTATAATGCAAGGACTAGAGAGGCATCATGGGAGAAGCCAAAGAATGTCGTATCACCACTACCTTCTCACCTACAAGGGCCTCAGACACAGGCTCCATTGCAGCCAAATCAACAGCAATCACAGGCTGAAGATCAACAATCTGATAAGGAACAGCAACAACAAGGCACAAAAGAAGAAGGAGAAAGTGAAGCCGAACAACAACCTCGACAACAACCTCGACAACAACAACCGCAACAACCTCAACAACAACAACAACCTCAACAACAACAACAACAACCTCAACAACAACATCAACCTCAACAACAACAACAACCTCAACAACAACAACCTCAACAACAAACTCAACAACAAACTCAACAACAACCTCAACAACAACCACCTCAACAACAACCTCAACAACCACCTCAACAACAACAACCACCTCAACAACAACAACCACCTCAACAACAACAACCACCTCAACAACAACAACCTCGACAACAACCTCAACAACAACAACCTAAAAAAAAACAGCTGCAACTAGAGCCACAACAACAGCTACAGCAACAGATACAGCAACAACAACAGATACAACAACAACAACAGATACAGCAGAAGCTGCAACAGTTACCTCAGCTGCAACCATCACCACAACACCCAGGACCTGCTCAGCCACCTAACATGCCTCCACCACAAAATCCCCAAGGATTGCCTCCCCCTGGTTTGCCTCACCCTGGCATGCCTCCCCCTGGAATGCCCATACCTGGTATGCCCATCCCTGGAATGCCTCCCCCTGGGTTAATATCAGGCATGCCACCAAGAATGCCACCACCAGGAATGCCTCCACCTGGCCTCCAGATTCCTCCTATGGGTATGCCCTCCCACAGTGAGTGGTCAGAGCACAGAACGGCAGATGGCAGAGTGTATTTCTATAATGCCAGAACAATGCAGTCAACATGGGAGAGGCCTAAGGAGATGGATCAGATGCCGCCAATGATGCCTGGCATTCCACCAGGCATGCCTCCCCCAAATCTGTTACCAGGCGGGTTCCCTGGTCCAAGAGGGCCAGTGGGCCCACCACATCCCATGGGTACCCCTCTTGGTCAAGGTGGCGAAGGCATAAAGACTATTGATCTCAGCCAACAAGATAAGCCCAAAATGACTGAAGAGGTGGAAGGTAAAGAGGAAGAAAAACCAGATGATGAAGGAACCAAAGATGAACAGCAAGATGCCGATAAGAGTAAACCAGTTGCCAGTCAACTTGTGCCAGGCACCTCATGGTGTGTAGTTTGGACAGGTGACAAGAAAGCATTCTTCTTCAACCCTACCACACGTTTATCTGTCTGGGAAAAACCTGAGGAACTAAACGATGATGAGAAAGTGGACGAAATTATTGAGAAAGGCCCACCAAGCAAACAAGAGAAAAGCAAGTTAAGGAGGTCTGTTGATGAGCCAGAAGAACAAGAGCCTGCTCCAAAGAAACAGAGAAGAGAAAGCAAAGAAGAAAGCCCAAGCCCCAAGGGAGCTGATGTAGAAATGCCAACAGAGGAGGAGAAGGAACCAGAACCTGTCAAAGTTGTACCCAAAGCAAGTAAATCAGCCAGGGAAAAGAAGCAAGTCAAGAGTGAAAAACAGAGGGAGATGTTATCCCTTGATGACAGAATGAAGCAGTTTAGGGAAATGATGCTAGAAAGAGGGGTCTCTGCATTCTCTACATGGGAGAAGGAACTACCAAAGATTGTATTTGACCCACGATTCCTTTTGCTAACCCAAAGGGAACGCAAACAGTGCTTTGAAAAATTTGTACGATCACGAGCTGATGAGGAACGGCAGGAGAGAAAAAACAAACTGAAAGAGAAGAAAGATGAATTTAAAGCTCTTCTTGATGAAGTCAAAATATCAACCAAGTCATCGTTTAGTGACTTTGCCATGAAGTATGGCAAGGATGAGAGATTCAAACACATTGAGAAAATGAAGGACAGGGAGACGTTATTCCATGAATACATTACTGAGACAAGAAAGAAAGAGAAGGAATCATCCAAATTCAAGCATAATAAGCATCAAGACGACTTTTTTGCACTTCTGGCAGAGCAAAAGCTGGACACAAAATCTCAGTGGCGTAAGGTGAAGGTCAAGATTGAAAAGGATCCTCGCTACAATGTTGTGGAGAATGTTGCAGCAAAAGAAGAATACTTTGAGGAGTACATAGAGCAGCTAGAAAAGAGGGAAAATGCTGACCAAGAGAAGGAAAGAGAAAAGTTAGAGAGGATGGAAGCCAGTATGCGTGAACGTGAGCGTGAAGTACGTGCCAGCCAGGCTGAGTTAGCCAAGGCCAGAGAGAAGGAGAAGGAATTCCACTTGAGGGATAAAGCAGTACAGCATTTCAGTGCCCTGTTGACAGACATGGTAATTGAATGTGTTCACACTCACAAATAA

Transcript

Acti_008183-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF00397	WW	WW domain	Domain	Interproscan
PF01846	FF	FF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202	Domain	WW domain	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR002713	Domain	FF domain	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036020	Homologous_superfamily	WW domain superfamily	Interproscan
IPR036517	Homologous_superfamily	FF domain superfamily	Interproscan
IPR045148	Family	Transcription elongation regulator 1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15377	TRANSCRIPTION ELONGATION REGULATOR 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0070063	Molecular Function	RNA polymerase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-