Gene detail

Detailed information of Acti_006437-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_006437-T1	DIHYDROXY-ACID DEHYDRATASE DAD	ScLC4GM_174	1021494	1031231	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_006437-T1

ATGCCAAATACTAAAAATACTCGCAAATATTCTTCTCAAGTTGTAGATGGCTATGAACGCGCAGCATCTAGGGCTATGCTTTATCCTGTTGGCTTTAACAAAGAAGATTTTAAAAAACCGCAAATCGGCATTGCTTCAACTTGGTCAATGGTAACGCCTTGTAATATGCATATTAACGACCTCGCTATTGAAAGTGAAAAAGGTGTTAATGCTACTGGCGGTAAAGCCGTTATTTTTAACACTATCACTATTTCCGATGGCATTTCTATGGGTAGCGAGGGTATGAAATATTCGCTAGTTTCTCGTGAAGTGATTGCTGATAGCATTGAAACTGTGGTGGCTTGTCAAGGCTTTGATGGTGTGGTGGCAATTGGCGGATGTGATAAAAATATGCCGGGGTGTATTATGGGGATTGCTAGGCTTAATCGCCCAGCGGTTTTTGTGTATGGTGGCACTATTATGCCTGGTAAAAATCACACCGATGTTGTTAGCGTTTTTGAAGCAGTAGGACAATATGCCAATAATAAAATTGATGCCATTGAACTGGAAAACATTGAAAAAAACGCCATTCCTGGAGCAGGAAGTTGTGGTGGAATGTATACTGCCAATACTATGGCTAGTGGCATTGAAGCACTGGGAATGAGTTTGCCAAATTCATCAGCACAAAATGCCATTTCTGCTGACAAGAATAGCGATTGTGAAAGGGCTGGTGCTGCGGTGATGAATTTACTGGAATTGGATATTAAGCCTAGTGATATTATGACACTTCACGCCTTTGAAAATGCTATGACCGTGATTATCACCCTTGGCGGTTCTACTAATGCGGTGATGCATTTAATTGCGATGGCAGATGCTATTGGCGTTAAATTAGCCCTTGATGATTGGACTAGAATTGGCAAAAAAACTCCAGTATTGGCGGATTTAAAACCCAGCGGTAAATATATGATGAGTGAATTAGTTGCCATTGGTGGAACTTTGCCACTGATGAAAATGTTGCTTGATGCTGGACTTTTGCACGGCGATTGCATCACCGCTACTGGCAAAACTGTTGCTGAAAATTTAGCAACAGTGAAGGCGTATGGTGAGCAAGACATTATTCGCAAACTTGATAATCCAATCAAAAAAGATAGCCATCTTAGAATTTTGTATGGCAATCTTGCAACTGGTGGCGCTGTCGCCAAAATCTCTGGCAAAGAGGGCTTGAGTTTCACTGGCAATGCTAAATGTTTTGGGCGTGAAGAAACAGCACTATCAGCAATTTTAAATGATGAAATAATCGCTGGTGATGTGATTGTTATCCGCTATGAAGGACCAAAAGGAGGTCCGGGAATGCGTGAAATGTTAGCACCAACTTCTGCGGTGATGGGTAAAGGCTTGGGCGACAAAGTAGCGTTAATTACTGATGGTAGATTTAGCGGTGGCACTAGGGGTTTTGTGGTAGGACATATCACCCCAGAAGCCTTTGATGGCGGTGTTTTGGCAGTGGTGAAAGATGGTGATGAAATTACCATTGATGCCAACAATGATAGTTTAATATTAAATGTTGCCGCTGATATTATTGCTAAAAGATTGCAAAATTGGCAACAACCAAAACCAAACTACACAAAAGGCGATGGCAGTGTTAAAGTGGTTTGGGATATTCGTGATGGCTATTATATGTATCACGAGAAATTTAGTTTTGCGGTTGCTGGAGCAGATTTTGGCAAGATAGATATTCCCCAAGGCATTCCCAAAAAAGATGAGTTTTTTGGTGATATTACCATTCATAAAAAACAATTAGTTGTTGATTTGCCACTGGAAAATGTCAATGACAGTATTGATTTGACAGTTAATTATCAAGGTTGCTGGGAAGGTGGAGTTTGTTATCCGCCAATTGTTAAAAAAGTTACTATTCAAATGAATGGTGCTGGTGGTAATGCTACTAACAGCAATGACCTTAGTTCTGGCATAATTTTACCGACGGCCATTAAAGATAACAATTTATCAATTTCTCAAATAACGCTTAGCGAAGAAGAACAAATTGCCAAAGATTTTGATAGCAGTTCATTTATTTGGATTTTAATCGCATTTTTTGGTTTTGGGATTTTGGCGGCATTTACTTCTTGTATTATTCCGATGATACCAATTTTATCTAGTTTGATTATTGGTGCTGGTAATCCTAGCAAGAAAAAAGCATTTTTTATGTCATTAACTTTTGTGGTATTTATGGCATTAACTTATTCGGTGGTGGGGGTTTTTGCTGGATTGTTTGGTGCTAATTTACAGATTGTCTTTCAAAATCCGTGGGTAATTGGTAGTTTTAGCTTGATGTTTGTAGCGTTGGCATTTTCAATGTTTGGCTATTATGATATTAAAATTCCAAATTATTTGCAAGAAAAACTCACTGTTATTAGCAATAAACAAAAAGGCGGTCATTTGATTGGCGTGGCAATTATGGGAGTTTTGTCAGCACTGATTGTTGGTCCTTGTGCCGCACCTGTTATCAGCGGTGCTTTGCTTTATATTGGCAATAGTGGCGATGCAGTGCTTGGCGGAAGTGCGTTATTTGTGATGGGGCTTGGTATGGGATTGCCACTGATTGTTGCTGGTGTTGGCGTGGCAACTCCTAAGGCTGGAGCATGGATGGATAGCGTTAAAGCGGTGTTTGGCGTGGTGATGCTGGGTATGGCGATTTACTTTTTAGAAAGAGTGGTAGATAATAATATTACTATTATTATGTGGGCGATTTTATTAACGATAGCACCAATTATGTTAGGAGTGGTTAGTAGCTTTGCTGGTGATAAACCGATGTTACGAATGTTTAAAGCTATTGGTTTGATTGTGTTGGCATTTGGGATTATGGCTTGGATTGCGATTGCTAAAGGCTCATCAAAACGCTGGATGGCAGAACACAAAACTGATGAATTTGTCGCTAGGGCAAGGGTTGATGGTTATCGTTCTCGTGCCGTCTATAAACTTTTGGAAGTAATTGAAAAATATAAAATCATCAAATCTGGCGATAGCGTCCTAGATTTAGGAGCAGCCCCCGGCTCGTGGAGCGAAGTCGCCATCAGCAAAGTTGGCAAAAATGGGACAGTGGTTGCCAGTGATATTTTAGACATCAAGCCAATCCACGGAGTTGAGTTTTTTAAAAGGCGATTTTTACCACTGCTGCTGTGTATGAAAAACTTTTACAACTAG

Transcript

Acti_006437-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00920	ILVD_EDD	Dehydratase family	Family	Interproscan
PF01728	FtsJ	FtsJ-like methyltransferase	Family	Interproscan
PF02683	DsbD	Cytochrome C biogenesis protein transmembrane region	Family	Interproscan
PF11412	DsbD_N	Thiol:disulfide interchange protein DsbD, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000581	Family	Dihydroxy-acid/6-phosphogluconate dehydratase	Interproscan
IPR002877	Domain	Ribosomal RNA methyltransferase, FtsJ domain	Interproscan
IPR003834	Domain	Cytochrome C biogenesis protein, transmembrane domain	Interproscan
IPR004404	Family	Dihydroxy-acid dehydratase	Interproscan
IPR020558	Conserved_site	Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site	Interproscan
IPR028250	Domain	Thiol:disulfide interchange protein DsbD, N-terminal domain	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR036929	Homologous_superfamily	Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily	Interproscan
IPR037237	Homologous_superfamily	IlvD/EDD, N-terminal domain	Interproscan
IPR042096	Homologous_superfamily	Dihydroxy-acid dehydratase, C-terminal	Interproscan
IPR050165	Family	Dihydroxy-acid dehydratase IlvD/Edd	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21000	DIHYDROXY-ACID DEHYDRATASE DAD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004160	Molecular Function	dihydroxy-acid dehydratase activity	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0009082	Biological Process	branched-chain amino acid biosynthetic process	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016836	Molecular Function	hydro-lyase activity	Interproscan
GO:0017004	Biological Process	cytochrome complex assembly	Interproscan
GO:0032259	Biological Process	methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-