Gene detail

Detailed information of Acti_006373-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_006373-T1	CARBAMOYLTRANSFERASE FAMILY MEMBER	ScLC4GM_174	754140	759470	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_006373-T1

ATGGCAAAAAGACAAGATATAAAAAGCGTTTTAATTATTGGTGCAGGTCCTATTGTAATCGGTCAAGCGTGTGAATTTGACTATTCTGGAGCTCAAGCCTGTAAAGCCTTGCGTGAGGAGGGATTACGAGTTATTTTGGTAAATTCCAATCCAGCCACAATTATGACCGATCCACAAATGGCAGATGCCACCTACATTGAGCCAATTACTTGGCAAGTGGTGGAAAAAATTATTGCCAAAGAAAAACCAGATGCACTTTTACCAACAATGGGCGGACAAACTGCTCTTAATTGTGCGTTAGACCTTGAAAAACACGGTGTTTTAGAAAAATATTCTGTGGAAATGATTGGGGCAAAATCAGCGGCAATAAATAAAGCAGAAGACCGTGATTTATTTCGCAAAGCAATGCTAAAAATTGGGCTAGATATGCCAAAAGCTGCTGTTGCACATACCATTGAAGATGCTAGAATTATTCAAAAAGAAGTAGGTTTCCCAACAATTATTAGACCTAGTTTTACTATGGGTGGCACTGGTGGCGGCATTGCTTATAATGTTGAAGAATTTGAAGAAATTTGTAATCGTGGGCTAGATTTATCACCAACTAATGAATTGCTAGTTGAAGAGTCAATCTTGGGCTGGAAAGAGTTTGAAATGGAAGTGGTTCGTGATACCAAAGACAATTGCATTATCATTTGCTCGATTGAAAATTTTGACCCAATGGGTGTGCATACTGGCGATTCCATTACTGTAGCACCAGCACAAACTTTGACTGATAAAGAATATCAAATTATGCGTAATGCTTCTTTGGCAGTTTTACGAGAAATTGGCGTTGATACTGGTGGCTCAAATGTGCAGTTTGCACTGAATCCTGATGATGGTAGATTAACAATTATTGAGATGAACCCCAGAGTTTCAAGGTCATCAGCATTGGCATCAAAAGCCACAGGTTTTCCAATCGCCAAGATAGCCGCCAAACTTGCTATCGGTTATACTCTTGATGAATTAGGTAATGATATTACTGGTGGCAAAACCCCAGCATCTTTTGAGCCTAGTATTGATTATGTAGTTGTTAAAATCCCACGATTTGCTTTTGAAAAATTCCCAACTGCAGACAGTAGATTAACCACGCAAATGAAATCTGTTGGCGAAGTAATGGCAATGGGCTCAACCTTTTCTCAAAGTTTGCAAAAAGCATTGAGAGGGCTAGAAACCGATAAATTTGGCTTAGAGCCAATAGTTGATTTAAGTGATGATAATGCTAAAAATATTATTAAAAATCAGTTAATAACGGCAAGAGATGAAAGAATTTTTTATATTGGCGACGCTTTCAGGCTTGGTATGACTTTGACAGAAGTATTTGATTTATGCAAAATTGATAGATGGTTTCTTATGCAAATTCAAAATATCATCAGCACCGAAGGACAAATTGCCAGTCAGTCTTTAAGCGAGGTTGAAAAACTAGATTTATTAAGTTGGAAAAAACTAGGTTTTGCAGATAAAAGAATTGCAGATTTAATGAGCGTTGCCGAAGCATCAGTGCGTGAAAAACGCAAGATTTTAGGCATCAAGCCAACTTTTAAACGCGTTGATAGTTGTGCTGGTGAGTTTGCTACCGAGACTGCTTATTTATATTCAACTTACGAACAAGAATGTGAGGCCAATCCTACTACTAACAATAAAATTATGATTTTAGGTGGTGGTCCAAATCGCATAGGACAGGGCATTGAGTTTGATTATTGCTGTGTTCATGCCTCAATCGCTTTACGCGAACAGGGTTATGAGACAATTATGGTAAATTGCAATCCCGAAACTGTCTCCACCGATTATGATACCTCGGATAGACTTTATTTTGAACCATTGACGCTAGAAGACACTTTGGCAATTATTGAGATTGAGCAACCTAGCGGAATTATCGTGCATTATGGCGGACAAACACCACTTAAATTAGCCAATGCTTTGGAGCAAAGTGGTGCAAAAATTATCGGCACCTCTCCTGATGCAATTGACTTGGCAGAAGATAGAGAAAGATTTTCTAGTATGCTTGATGAATTAGGCTTAAAACAACCACAAAATGGCACAGCAACCTCAGAATCCCAAGCTTTTGCAATTGCCGAAGGCATTGGTTTTCCGTTAGTTGTTCGCCCAAGTTATGTTTTGGGTGGCAGGGCTATGGAAATTGTTTATAATCAGACAAGCTTAAAAACTTATATGCAAACAGCAGTTTCAGTTTCTAACGACGCCCCTGTTTTGCTAGATAGTTTTTTAGACCACGCTATTGAAGTGGATATTGATGTTATCAGCGATGGTGAAAATGTTGTCATCGGTGGCATTATGGAACACATTGAACAGGCTGGAATTCACTCTGGCGACAGTGCTTGTTCATTGCCACCATACAGTCTTAGAAAAGCAGTTTTGGATAAAATGCGTCTCCAAGTTATTCAAATGGCAAAAGCCTTAAAAGTCATAGGACTTATGAATACGCAACTTGCATACCAAGATGGCGAAATTTTCGTAATTGAAGTTAATCCTCGCGCTTCACGCACCGTGCCTTTTGTTTCCAAGGCAATTAACCGGCCACTTGCTGGAATTGCTGCCAAAGTTATGGCAGGAATAAGCCTTAAAGAACAAGGGTTTATGAATATTGCAGGATTAGTTGAGGGGGCTTCAAAAGGTGAGGGGTTAGGCAATCAATTTTTAACTAATATTCGTGAAACTGACGCTATTATTCATGTGGTGCGTTGTTTTGAAAATGCTGATATTATCCATGTTGCTGGTAAAGTTGATCCACTGGCAGACGCTGATATTATCAATACTGAACTGATGTTAGCAGATTTATCGCAAGTAGAAAATCTTTATAAAAAAGCTGTGAAAAATACCAAATCTGGGCAAAAAGATGGATTACCCTTAAAAGAAATTTTAGAAAAACTTCAAAATGAATTAGCAGCTGGAAAATCAATTCGTAGTTTGGATTTAACAGCTGCTGAAAAAGAACTCATAAAACCATTACAATTTTTAAGCGTTAAACCAGTTTTATATGTTGCTAATGTTAGCGATGATGGTTTTGAAAATAATCCACACCTTGACAATTTAACAACTTATGCTGCTAGTGATAATGCTAAAATCGTGGCAATATGTGCTGATATTGAAGCAGAAATTGCTGAATTAAGTGATGAGGAAAAACAAGATTTTTTAAACGAGATGGGGCAAGAACAATCAGGGCTTGATAGACTTATTCAGGCTGGATATGATTTGCTTGGATTACAAACTTATTTTACTGCTGGGGTGCAAGAAGTTCGTGCTTGGACTATCAACAAAGGCGACACTGCCCCACAAGCTGCTGGAAAAATTCACGGTGATTTTGAAAAAGGCTTTATTCGTGCTGAGACCATTGCTTACGCAGATTTTATAGAATTTGCTGGTGAAAAAGGTGCAAAAGAAAATGGCAAAATGCGTGTTGAAGGCAAAGAATATATAATGAATGATGGCGATGTGGCAAAAACCCCTGTTTTTGACAAACTTTTAGCAGGCAATCCCAATACTTTAATTTACACTTCTGGCGAAAGCGTTGGTTTGGTTGGTGAGCAAATGGGTAATTCTGAAGTTGGACATCTTAATATCGGTGCTGGGCGTGTTGTCCGCCAAGAGTTGTCAAGAATTCACAATGAAATTAAAACTGGTGGATTTTTCCATAATCCAATTTTTAAAAACCAACTAGAATACGCCAAAGAAAATAACAAGGCTGTGCATATTATGGGACTTTTGAGTGATGGTGGTGTGCATTCTCACATCAGCCATATTGAAGCAATGTTAAAAATGTGTGCTGATAAAAAATTAACAAAAGTTTATTTGCATATGTTTAGTGATGGCAGGGATTGTCCGCCAAAAAGTGCCAAAAAATATTTTAACCAACTTGAAGAAAAAATTGCAAAATTGGGCGTTGGCAAAATTGCCACAATTATTGGGCGTTATTACGCCCTAGATAGAGATAATCGCTGGGATAGAGTTTGCAATGCTTTTGAACTTATGGTTCGCAGCAAAAGTAATTTTGATGCAAAAAATTCTATCCAAGCAATTGATGCTGCTTATCAAAGGTGTGAAACTGATGAATTTATTAAAGCCACTACAATCAATGGTGGTGCTAAAATAAATAAAGGTGATGCCATCATTTTTATGAATTATCGTGCAGATAGAGCCAGACAAATTACCGAAAGTTTTATCAAAAAAGATTTTAGCGGTTTTGCAAGAGGCACTTTTGAAAGTGTGCAATTTTCTTGTCTTACCGAATACAAAAAAGATTATAATTTACCAGTTGCATACCCTAGTATGAAGTTAAATAATGTCTTGGGAAAATATCTTGCTAAGCTTGGCAAAACTCAACTTCGCATCGCTGAAACTGAAAAATATGCCCATGTTACTTTCTTTTTAAATGGTGGTATTGAAGAACCCTTTAACGGCGAAGATAGACTTTTAATTCCATCGCCAGATGTCGCAACTTACGATTTGCAACCTGCAATGAGTTCAACAGAATTAACTGATAAATTAACCCAGCAAATCACCAGTGGCAAATACGATTTGATAATTTGTAATTATGCAAACACTGATATGGTAGGGCATAGCGGCAAATTAGCAGCTACCATTCAAGCTGTTGAAGCGGTGGATAGTTGCATTGCTAGAGTTATCCACAGCATTGAAAAAATTGCTGGTGAAATTTTGATAACTGCTGACCACGGCAACGCCGAAAAAATGTTTGATGAAAAGACCAACGCACCACACACCGCCCACACCTCAAACCCTGTGCCATTAATTTATGTTGGCAACAACAATTTTAAATTTGACAATAAACACAAAGCACTAGCAGATATTGCTCCAACTTTGTTAAAATTGATGAATTTATCACAACCAAAAGAAATGACTGGCAGGAGTTTACTTTCGTGA

Transcript

Acti_006373-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01676	Metalloenzyme	Metalloenzyme superfamily	Family	Interproscan
PF02786	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF02787	CPSase_L_D3	Carbamoyl-phosphate synthetase large chain, oligomerisation domain	Domain	Interproscan
PF06071	YchF-GTPase_C	Protein of unknown function (DUF933)	Domain	Interproscan
PF06415	iPGM_N	BPG-independent PGAM N-terminus (iPGM_N)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004095	Domain	TGS	Interproscan
IPR004396	Family	Ribosome-binding ATPase YchF/Obg-like ATPase 1	Interproscan
IPR005479	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR005480	Domain	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	Interproscan
IPR005483	Domain	Carbamoyl-phosphate synthase large subunit, CPSase domain	Interproscan
IPR005995	Family	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR006124	Domain	Metalloenzyme	Interproscan
IPR006275	Family	Carbamoyl-phosphate synthase, large subunit	Interproscan
IPR011258	Domain	BPG-independent PGAM, N-terminal	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR012676	Homologous_superfamily	TGS-like	Interproscan
IPR013029	Domain	YchF, C-terminal domain	Interproscan
IPR016185	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR017850	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR023192	Homologous_superfamily	TGS-like domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031167	Domain	OBG-type guanine nucleotide-binding (G) domain	Interproscan
IPR036646	Homologous_superfamily	BPG-independent phosphoglycerate mutase, domain B superfamily	Interproscan
IPR036897	Homologous_superfamily	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11405	CARBAMOYLTRANSFERASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004088	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0004619	Molecular Function	phosphoglycerate mutase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006007	Biological Process	glucose catabolic process	Interproscan
GO:0006541	Biological Process	glutamine metabolic process	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030145	Molecular Function	manganese ion binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-