Gene detail

Detailed information of Acti_006372-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_006372-T1	D-TAGATOSE-1,6-BISPHOSPHATE ALDOLASE	ScLC4GM_174	744213	751552	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_006372-T1

ATGCTTGCAAGGTTAAAGAAAATTGGCTTTATAATTACCAAACTTAATTTTGGCGATGGTGATGAGTTAGTAGAAAACTTTTTTGCCATCAAACAAGGCGTTAGTAGCACCAAAACATTTATGTTTGCAGGGCATACCGATGTTGTGCCAGTTGGCGATGAAAATTCTTGGCAACACCCACCATTTTCTGGGGAAATCATCGATGGTTTTTTGTGTGGCAGAGGTGCTGCTGATATGAAAGGTTCATTGGCAGCAATGGTTGTGGCTTGTGAAGAATTTATAAAAAATCACCCAAATCACGCTGAAAATATTGCATTTTTAATCACTAGCGATGAAGAAGGTCCTGCAAAAAATGGCACAATAAAAGTCTGTGAATATTTACAAGAAATAGGTCAAAAAATAGATTATTGCCTAGTTGGAGAACCATCATCTACCAACGAATTAGGCGACATCATCAAAAACGGCCGCCGTGGTTCATTAAATGGATTTTTAACCATCATCGGCAAACAAGGTCATATCGCTTATCCACATCTTGCCAACAATCCAATCCACCTAGCAACTGCTTTTTTGACAGAACTCACCAGTATAGTTTGGGACAATGGTGATAAATATTTTGCACCAACCAGTTTGCAAATCTCCAATATTAACTCTGGCACAGGCGTTACAAATGTCATTCCGCAAGACCTTGATATAGTCTTTAACTTCCGCTACAACACTACCCACACTCACCAAGAATTACAAGAAAAAATAGTAGCCTTACTTAACAAACACAATTTGGAATTCAAAATAGAGTGGCAACATTCTGGTGCATCATTCATCACCAAAGTCGGCGATTTAGTCAATGCCTGTGTGCAAAGTTGCCAAGCAATTACTGGCGTTAAAAGTAAAATATCCACCACTGGTGGCACTAGCGATGGCAGATTTATTGCTCCAATGCTAGGCTACCATGCTGCTGAAAATGGCTATGGAATGCCAGCGTTTAATGTCAATAATATGGAGCAGGTGCATGCGATTATGACTGCTGCCGATAAAACCAATAGTCCTGTTATTATGCAAGGTTCTGCTGGTGCTAGGGGTTATGCTGGTGAACCGTTTTTGCGGCATTTGATTTTGGCAGCAACAGAAATGTATCCACATATTCCAGTGGTTATGCACCAAGACCATGGCAGCGAACCTGCGGTTTGTTTGCGTTCTATTCAATCTGGTTTTTCATCAGTGATGATGGACGGTTCTTTGGAGGCGGATATGAAAACCCCAGCATCTTTTGAATATAATGTTGCCGTTACCAAACAAGTTGTTGCTATGGCACACGCTGGTGGGGTTTCTGTTGAAGGCGAGTTGGGTTGTTTGGGCTCGTTAGAAACTGGAATGATGGGCGAAGAGGACGGACACGGTGCTGATGGCAAGTTAGATTTGGATATGCTTTTGACTAGCGTTGAAGAAGCGGCGGATTTTGTAAAAGCCACTAATGTTGATGCTTTGGCAATTGCGATTGGCACTTCTCACGGTGCTTACAAATTTACCAAAGAACCTACTGGCGATGTTTTGAGAATTGACAGAATTAAAGAAATTCACGCAAGAATTCCTAACACACATTTAGTTATGCACGGTTCTTCTAGCGTTCCACAAGAATGGTTGGAAATTATCAATAATCACGGTGGCGATATGGGGCAGACTTATGGAGTCCCTGTTGGCGAGATTGTTGAGGGAATTAAATTTGGTGTTCGCAAAGTTAATATTGATACTGATTTGCGTATGGCATCAACTGGTGCGGTGCGTAAGTTCTTGGCAGAAAACACTGCTAACTTTGACCCTCGTAAGTTTTTGAAAGCAGCAACTAGTGCGATGAGTGATATTTGTGCTGCTAGGTTTGAGGCTTTTGGCAGTGCTGGTCAGGCTGATAAGATTAAAGTTTCTTCTTTGGAAACTATGATTGAGCGTTATAAGAGCGCACAAGAAACAAAAGATTTTGCCTTGGTGGTTACAGTCTTTAAACCTTCTACTGAACCAGTTTCTGGATAG

Transcript

Acti_006372-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01116	F_bP_aldolase	Fructose-bisphosphate aldolase class-II	Domain	Interproscan
PF01546	Peptidase_M20	Peptidase family M20/M25/M40	Family	Interproscan
PF07687	M20_dimer	Peptidase dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000771	Family	Fructose-bisphosphate aldolase, class-II	Interproscan
IPR002933	Family	Peptidase M20	Interproscan
IPR005941	Family	Succinyl-diaminopimelate desuccinylase, proteobacteria	Interproscan
IPR006412	Family	Fructose-bisphosphate aldolase, class II, Calvin cycle subtype	Interproscan
IPR011650	Domain	Peptidase M20, dimerisation domain	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR036264	Homologous_superfamily	Bacterial exopeptidase dimerisation domain	Interproscan
IPR050246	Family	Class II Fructose-bisphosphate Aldolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30304	D-TAGATOSE-1,6-BISPHOSPHATE ALDOLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004332	Molecular Function	fructose-bisphosphate aldolase activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006096	Biological Process	glycolytic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0009014	Molecular Function	succinyl-diaminopimelate desuccinylase activity	Interproscan
GO:0009089	Biological Process	lysine biosynthetic process via diaminopimelate	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0016832	Molecular Function	aldehyde-lyase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-