Gene detail

Detailed information of Acti_006284-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_006284-T1	PHOSPHOSERINE AMINOTRANSFERASE	ScLC4GM_174	217812	222902	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_006284-T1

ATGACAAAAGCTAAGGCAAATGGTAATTATATTAACTCAATGTTGGCATTGCAAGAAGCCTTGACTGATGGTTATGATGAGGCACTTTTGCTTGATGTTGATGGTTTTGTGGCAGAAGGTAGTGGTGAGAATATTTTTGTGATTCGTGATGGCATTATTTATACACCTGATTTAAGTTCCGCACTTGCTGGAATTACTAGGGATAGTATTTTTGAAATTGCTACTGATATGGGTTATGAGGTGCTAGAAAAACGCATTACCAGAGATGAGATTTATTGTTGTGATGAGGCATTTTTTACTGGCACTGCTGCGGAAGTTACGCCAATTCGTGGAGCGTCAGCACAATTTTCAATGATTCCCATCAATCTTTTGCGTGATAAAAATACCGCAAATTATGCTTTGACAGGGCATTGGGGGCAAAAAGCCGTGGCAGAAGCAAGTCGTTATACCAAGGTTAATATTGCCACTAACAGCACACAAAATAACTGGACTACTATTGCAGATTTTAAAGATTGGCAAATTGATGAAACGGCGGCGTATTTGCATTACACCACCAATGAAACCATTGCAGGGCTTGAATTTGATAGCGTTCCAGAAGTTAATATGCCACTAGTTGCGGATATGAGTTCTAATATTTTATCTAGCAAAATTGATGTTAGTAAGTTTGGAGTTATTTACGCTGGGGCGCAAAAAAATATTGGTAGTAGTGGTTTGACGGTGGTGATAGTGCGTGATGATTTGATTGGCAATGCTGATGTTAAAATGCCAAAACTTTTTGATTATGCAACTTATGCAAAAAATGATTCAATGTTTAACACCCCAAATACTTTTGCTTGGTATTGTGGATATAAAGTTTTTAAATGGCTAAAAGCCCTTGGTGGCGTTGATGAAATTGCAAAAGTCAATCAAAACAAAGCCAATCTTTTGTATGCTGCTATTGACAATTCTGGATTTTATTCAAACCCTGTTGATAAAAAATATCAATCTAAAATGAATGTGCCGTTTATTCTGGCTGATGATAAATTAAATGCGGGCCAGAAGGCACTTGGACTGGCGAGGGCTGCTATCAAACATTTTGGTAGTGGCGTTAGTATTGATGCTTGTTTTAGCATTGATGATGTTTTTTCCCAAGTTGAAAAAAATAATGCTAATTATGGAGTTGTGCCGATTGAAAATTCTAGCAATGGCACAATTACGGCAACAGTTGATTTACTTTATAGCCATAATCTTAACATTTGTGGCGAAGTTGAAGTTAGGGTCAAACATCAACTTTTGGGAAAAACTACTGGCGTTAAAAAAATTGTCGCCCATCAACAAGCACTAGACCAGTGCCGAAAATATCTTAAAAATAATTATCCAAACATAGAACAACAAGCAGTTGCTTCAAACGGTATTGCTGCAAAAATGGCAAGTGAAAATGATAGTTTGGCAGCAATCGCCTCACGCACTGCTGGTGATATTTATAATCTTGATACTATTGCGAAAAATATTGAAGATAGTGAAGATAATACTACGAGGTTTTTAATAGTTGGCAATGAAAAAGTTGGAGTTGTAAAAATAATGGAATTTAAGATTAACAAGGTTGCCACACAGGCACAAACCCAAGTTATTTTTGATAAAACGCTTACCTTGAATAAGGTGCGTTTTGATGGTAATAATCAACTTAGTATTGGGTCTGGAGAAGAAATACTAAATGCAAAAATCTTGAAAAAGTTAGCAATAACTTTGGCGCAAAATGCCAATCAATTTGGCATATCAGCATTATTTATACCAGCACTTGAAGTGGATGATTGTGTTGGTATTATTACTCAGGCAATGGCAAATAATGATTATCAAGTGCAAAAAATTGGTTTAGAAGCACCTGAGGAAAATGCCTTGCAAACGGTCGTGTTTGAGCGTGGAAATCAGGCGAGTATTGATCAAGCATTAGCGATTGCATCGGGTATGGCGTTAGCACGAACTTTAGGCGATATGCCAGCAAATATTTGCACGCCGACTTATTTAGCACAAACAGCACAGGAATTGGCTGGGGAGTTTGGACTTGAATGTGAGGTATTGGAAAAATCTGATATGTCAGCACTGGGTATGGGTTCATTATTATCAGTATCCAAAGGCTCAATTGAACCACCAAAACTCATCAGTTTAAGTTATAAAAATAATGGTGATGCCAAGCCGATTGTGTTGGTAGGCAAAGGCGTTACTTTTGATTCTGGTGGCATCTCTTTAAAATCAGGCGAAAATATGGATGAGATGAAATATGATATGTGTGGTGCAGCGTCTGTGTTAGGCACAATGCGTGCAGTTGTGCAAATGAAATTAGCCGTTAATTTAGTAGTGGTAGTTCCAGCGGTTGAAAATATGCCTGCACATAATGCTTCTAAGCCCGGTGATGTGGTTACTTCAATGTCAGGGCAAACATTGAAATTCTCAATACCGACGCTGAAGGGCGTTTAA

Transcript

Acti_006284-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266	Aminotran_5	Aminotransferase class-V	Domain	Interproscan
PF00800	PDT	Prephenate dehydratase	Family	Interproscan
PF00883	Peptidase_M17	Cytosol aminopeptidase family, catalytic domain	Domain	Interproscan
PF01063	Aminotran_4	Amino-transferase class IV	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000192	Domain	Aminotransferase class V domain	Interproscan
IPR000819	Domain	Peptidase M17, leucyl aminopeptidase, C-terminal	Interproscan
IPR001086	Domain	Prephenate dehydratase	Interproscan
IPR001544	Family	Aminotransferase class IV	Interproscan
IPR011356	Family	Peptidase M17, leucine aminopeptidase/peptidase B	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR018300	Conserved_site	Aminotransferase, class IV, conserved site	Interproscan
IPR018528	Conserved_site	Prephenate dehydratase, conserved site	Interproscan
IPR020578	Binding_site	Aminotransferase class-V, pyridoxal-phosphate binding site	Interproscan
IPR022278	Family	Phosphoserine aminotransferase	Interproscan
IPR036038	Homologous_superfamily	Aminotransferase-like, PLP-dependent enzymes	Interproscan
IPR043132	Homologous_superfamily	Branched-chain-amino-acid aminotransferase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43247	PHOSPHOSERINE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004648	Molecular Function	O-phospho-L-serine:2-oxoglutarate aminotransferase activity	Interproscan
GO:0004664	Molecular Function	prephenate dehydratase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0006564	Biological Process	L-serine biosynthetic process	Interproscan
GO:0009094	Biological Process	L-phenylalanine biosynthetic process	Interproscan
GO:0019538	Biological Process	protein metabolic process	Interproscan
GO:0030145	Molecular Function	manganese ion binding	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0070006	Molecular Function	metalloaminopeptidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-