Gene detail

Detailed information of Acti_006272-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_006272-T1	ISOCITRATE DEHYDROGENASE [NADP]	ScLC4GM_174	125458	133063	-

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_006272-T1

ATGCAACAAGTTAAAACTCCTACTGGCGATAAGATTACTTTTGTTGATGGCAAGATTCAAGTTGGTGATAATCCAACTATTGGTTATATTATTGGCGATGGCATTGGCAAAGATGTTTCTCCTGTGATGAAAACAGTGATTGATGCGGCGGTTAAAAAGGCTTATGGTGGCAAAAAATCTATTGATTGGTGTGAGATTTATGCTGGTGAAAAGGCTGATGGTTTGTATGGTGAGTATTTGCCGCTGGAAACTTTGGATTTTATTAGGGAATATAAAGTTGCGATTAAAGGTCCTTTGACGACTCCTGTTGGTGGCGGAATGCGTAGTTTGAATGTGGCGATTCGTCAAGAGTTGGATTTATTTACTTGTCTGCGTCCTGTGAGATATTTTACTGGGACTCCTAGTCCTGTGCGGTTTCCTGAAAGAATTGATATGGTGATTTTTCGTGAAAATAGTGAAGATATTTATGCAGGAATTGAATATCAGCAAGGCACTGTTGAGGTTAAGAAGTTGATTGACTTTTTGCAAAATGAGATGGGGGTTACTAAGATTCGTTTTCCAGAAACTAGTGGTATTGGTATAAAACCTGTGTCGATTGATGGCACTAAACGCTTGGTGCGTAATGCTATCAATTATGCTATTGACAATGATAAGCCTTCTGTTACCTTGGTGCATAAAGGTAATATTATGAAATTCACTGAAGGTGGCTTTAGGGATTGGGGCTATGCACTTGCTATGGAAGAATTTGGAGCGGTGGCTATTGATGATGGTGTTTGGTGTGAATTTAAAAACCCTAAGACTGGCAATATGATTGTTGTTAAGGATTGTATTGCTGATGCGTTTTTGCAGCAAATTTTATTGCGACCAGAGGAATATAGCGTTATTGCCACTCTTAATTTAAATGGTGATTATATTAGTGATGCTTTGGCAGCACAAGTTGGCGGGATTGGTATTGCTCCGGGGGCGAATTTATCAGATGATATTGGGGTTTTTGAAGCAACACACGGCACAGCACCGGGCTATGAAGGTAAAAATAATGTTAATCCTAGTTCTATTATTTTAAGTGCAGAAATGATGCTTACTCATATTGGCTGGACTTCCGCTGCTGATTTAATTATAAAATCTATGGAAAAAACCATTCAAAACAAAACAGTAACGCAAGATTTGGCTAGATTGACAGAAAATGCAACTTTGAAGTGGTTTATTTATCTAAAAAAATGCTTAATGGACAATAATATGAAATATATCCCCGGACTAGCAGGAGTTCCTGCCACAGAAAGTGCCATCTCTTCAATTGATGGTGAAAAAGGTATTCTCGCCTATAGAGGTTATTCGATTGAAGACCTTGCAAAGAAATCATCTTTTGAAGAGGTGGCAATGCTTTTGCGTTATGGTGAATTGCCTAGCGAAAAAGAATTGTTTGACTTTAAAGACACGCTGGAAAGACGCTATGAAGTTAAACGCAATATTCGCTCAATGATGTGGGCATTGCCTAGTGATTCACACCCTATGAATGTTTTGCAAACTGTAATTGCGGCGATGGCATCTTTTTACCCTGATGCTGGTGCTAAGGATTTAAAAAGTGAATATACTCAAAATGCCTTAATGAAAATCATTTCTAATATGAGTACTTTAGTGGCGATGTGGGCTAGAATTAGCAGCGGTTATGACCCTATTCACCCTGATAGCAAAATGGGTTATGCGGAAAATTTTCTTTATATGTCTTTTGGAGAAGAGCCATCAAAAGATTTAGTCAAACTTTTTGACGCTTGTTTGATTTTGCACGCTGAACACACCATTAATGCTAGCACATTTTCAGCAATGGTAACAGCCTCTACTTTGGCAAATCCTTTTGCCAGTATTTCCGCCGCAGTAGGCACTTTGGCTGGTAGTTTGCATGGTGGTGCTAACGAAGATGTTTTGGATATGTTAGATGAAATAAAAGAGCATTGCAAAACTCAAGACGATTTTTGCAAAGTCATTGATGTTTTGATAGTTGTTGGCGACTTCTCCAAGCCCCGGCCCAAGATTGTTGATGGCCGCTGCTGTGGCACTAAAGCTTGTGACTTGGTCTAG

Transcript

Acti_006272-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00180	Iso_dh	Isocitrate/isopropylmalate dehydrogenase	Domain	Interproscan
PF00285	Citrate_synt	Citrate synthase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002020	Family	Citrate synthase	Interproscan
IPR004439	Family	Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic	Interproscan
IPR016142	Homologous_superfamily	Citrate synthase-like, large alpha subdomain	Interproscan
IPR019818	Conserved_site	Isocitrate/isopropylmalate dehydrogenase, conserved site	Interproscan
IPR024084	Domain	Isopropylmalate dehydrogenase-like domain	Interproscan
IPR036969	Homologous_superfamily	Citrate synthase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43504	ISOCITRATE DEHYDROGENASE [NADP]	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0004450	Molecular Function	isocitrate dehydrogenase (NADP+) activity	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0046912	Molecular Function	acyltransferase activity, acyl groups converted into alkyl on transfer	Interproscan
GO:0051287	Molecular Function	NAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-