Gene detail

Detailed information of Acti_004669-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_004669-T1	DNA-DIRECTED RNA POLYMERASE	ScLC4GM_64	14622711	14630207	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_004669-T1

ATGTACATGTATATGTACTCTCCACAGGGTAAACCAGGTGAAATGGTTGGTGCACTGGCAGCACAGTCCTTGGGTGAACCAGCCACACAGATGACACTGAACACCTTCCATTATGCTGGAGTATCAGCCAAGAATGTCACGTTGGGTGTACCACGTCTCAAGGAGATTATCAATGTATCCAAACGTCCCAGGACACCCTCTCTGACAGTTTTCCTCATTGGTCAGGCAGCGAGGGATGCTGAAATGGCCAAGTCAGTTCTGTGTCACCTTGAACACACTACACTTCGTAAAGTCACGGCCAACACTGCAATCTACTATGACCCTGACCCCCAAAACACTGTGATCGCAGATGATCAGGACTTTGTCAATGTCTACTATGAAATGCCAGACTTCGATGTGGCTCGCATCTCGCCCTGGCTGCTGAGAATAGAGCTGGACCGAAAGAGGATGACGGACAAGAAGCTGACCATGGAACAGATCTCGGAGAAGATTAATCTTGGCTTTGGTGATGACTTGAACTGCATCTTTAACGATGACAATGCTGAGAAACTAGTCCTGAGGATCAGAATTATGAACAACGATGAAGGCAAAATGCAGGATGATGAAGACGTTGATAAGATGGACGATGACGTATTCCTGCGTTGTATCGAGGCCAACATGTTGACAGACATGACTCTGCAGGGTATAGAGTCCATCTCCAAGGTGTACATGAACCTACCTCACGAGGACAAGAAAAAACGAATTGTCATTACTGAGCAGGGAGAGTTCAAGGCCATCCAAGAGTGGATCCTGGAGACAGATGGTGTCAGCCTCATGAGGGTTCTCAGTCAGAGGGATGTGGACCCTGTTCGCACGACCTCTAATGACATCTGTGAAATATTCTCGGTGCTTGGTATCGAGGCAGTACGTAAGGCAGTTGAACGTGAGATGGATCACGTTATCTCGTTTGATGGCTCGTATGTGAACTACCGTCACTTGGCGTTGTTGTGTGACATTATGACATGTAGAGGTCACTTGATGGCTATAACCAGGCATGGTATCAACAGGCAAGATGTTGGCGCACTCATGAGGAGCTCCTTTGAAGAAACGGTTGATGTGCTGATGGAAGCAGCCGCTCATGCTGAAACTGATCATCTGCGTGGTGTAAGTGAGGCCATCATCATGGGCAAACTACCCCGTATAGGTACAGGAAGCTTTGATCTGATGCTGGATGCTGAGAAATGCAAGTATGGAATGGAGATTCCTACAAATATCATGGGGCCAGGCATGGGAGGACCTATGGCAGCCACTGGTGTGTTCTTTGGTGCGGCAGGCTCACCAAGTGCTATGTCCCCACAAATGACTCCATGGGGTACTACCCCAGCATATGCTGAGGCGTGGAGTCCAGGCCTGGGCAGTGGCATGACACCCGGGGCTGCCAGCTTCTCTCCAAATGCCTCAGATGCGAGCGGCATGAGCCCTGGAGGCTTCAGTCCAGCATGGAGCCCCCAGCCTGGGTCTCCTGTGTCACCAGGACCAGCAAGTCCTTACATACCCAGCCCAGCTACTGCTAGTCCTGGATATTCACCTGCTAGTCCGGCATTCATGCCAAGCTCGCCATCAATGTCACCAGCAAGTCCTTCTTACTCGCCAACATCTCCAGGATACTCACCTTCCTCTCCTTCATCTGGATACTCTCCAGCAAGTCCCAGCTACTCGCCAACATCTCCATCCTATTCTCCCACATCACCATCCTACTCCCCTACCTCCCCCTCCTATTCTCCAACCTCGCCAAGTTACAGCCCTTCTTCTCCATCTTATTCCCCAACGTCCCCATCTTATTCCCCAACCTCCCCATCGTATTCTCCAACTTCCCCATCGTATTCCCCCACATCCCCATCCTACTCACCTACCTCCCCATCCTATTCCCCAACATCTCCTTCCTACTCCCCAACCTCACCAAGTTACAGTCCGACATCCCCATCTTATTCCCCTACTTCCCCATCTTACTCCCCTACTTCCCCATCATATTCCCCATCTTCCCCCTCCTACTCCCCTACCTCGCCAAGTTACTCGCCGCAATCCCCATCATATTCACCAACATCCCCATCATACTCCCCTTCCTCCCCGAAGTATTCCCCTACATCCCCTAGTTATTCCCCTACATCGCCTAAGTACAGTCCAACATCTCCAACGTATTCCCCCACATCTCCTTCTTACTCTCCCGCATCACCTAAGTACTCCCCTACCTCCCCTTCCTACACCCCAACTTCCCCTACATACTCACCTACATCACCAACCTATTCTCCATCCTCTCCCCAGTACTCTCCTTCATCGCCACGATATACCCCTACCTCCCCTGAGTACTCCCCATCTTCTCCCAAGTATACCCCAGCCTCACCCAATTACTCCCCTACCTCTCCCAATTACTCCCCTACCTCCCCCAGCTACACACCTATGTCTGGCCACTACAGTCCCACATCTCCGAAGTACAGCCCCACGTCTAGTGGGCCATCGCCATCTCCTGGGTATTCCCCTACCTCACCACGTTACTCACCTACGTAA

Transcript

Acti_004669-T1

ATTTGTTGTATCCATGTGTTACTTAATGTGGTACGAAATAAAACGTTGCTGTTATTGATATACTATGTACATGTATATGTACTCTCCACAGGGTAAACCAGGTGAAATGGTTGGTGCACTGGCAGCACAGTCCTTGGGTGAACCAGCCACACAGATGACACTGAACACCTTCCATTATGCTGGAGTATCAGCCAAGAATGTCACGTTGGGTGTACCACGTCTCAAGGAGATTATCAATGTATCCAAACGTCCCAGGACACCCTCTCTGACAGTTTTCCTCATTGGTCAGGCAGCGAGGGATGCTGAAATGGCCAAGTCAGTTCTGTGTCACCTTGAACACACTACACTTCGTAAAGTCACGGCCAACACTGCAATCTACTATGACCCTGACCCCCAAAACACTGTGATCGCAGATGATCAGGACTTTGTCAATGTCTACTATGAAATGCCAGACTTCGATGTGGCTCGCATCTCGCCCTGGCTGCTGAGAATAGAGCTGGACCGAAAGAGGATGACGGACAAGAAGCTGACCATGGAACAGATCTCGGAGAAGATTAATCTTGGCTTTGGTGATGACTTGAACTGCATCTTTAACGATGACAATGCTGAGAAACTAGTCCTGAGGATCAGAATTATGAACAACGATGAAGGCAAAATGCAGGATGATGAAGACGTTGATAAGATGGACGATGACGTATTCCTGCGTTGTATCGAGGCCAACATGTTGACAGACATGACTCTGCAGGGTATAGAGTCCATCTCCAAGGTGTACATGAACCTACCTCACGAGGACAAGAAAAAACGAATTGTCATTACTGAGCAGGGAGAGTTCAAGGCCATCCAAGAGTGGATCCTGGAGACAGATGGTGTCAGCCTCATGAGGGTTCTCAGTCAGAGGGATGTGGACCCTGTTCGCACGACCTCTAATGACATCTGTGAAATATTCTCGGTGCTTGGTATCGAGGCAGTACGTAAGGCAGTTGAACGTGAGATGGATCACGTTATCTCGTTTGATGGCTCGTATGTGAACTACCGTCACTTGGCGTTGTTGTGTGACATTATGACATGTAGAGGTCACTTGATGGCTATAACCAGGCATGGTATCAACAGGCAAGATGTTGGCGCACTCATGAGGAGCTCCTTTGAAGAAACGGTTGATGTGCTGATGGAAGCAGCCGCTCATGCTGAAACTGATCATCTGCGTGGTGTAAGTGAGGCCATCATCATGGGCAAACTACCCCGTATAGGTACAGGAAGCTTTGATCTGATGCTGGATGCTGAGAAATGCAAGTATGGAATGGAGATTCCTACAAATATCATGGGGCCAGGCATGGGAGGACCTATGGCAGCCACTGGTGTGTTCTTTGGTGCGGCAGGCTCACCAAGTGCTATGTCCCCACAAATGACTCCATGGGGTACTACCCCAGCATATGCTGAGGCGTGGAGTCCAGGCCTGGGCAGTGGCATGACACCCGGGGCTGCCAGCTTCTCTCCAAATGCCTCAGATGCGAGCGGCATGAGCCCTGGAGGCTTCAGTCCAGCATGGAGCCCCCAGCCTGGGTCTCCTGTGTCACCAGGACCAGCAAGTCCTTACATACCCAGCCCAGCTACTGCTAGTCCTGGATATTCACCTGCTAGTCCGGCATTCATGCCAAGCTCGCCATCAATGTCACCAGCAAGTCCTTCTTACTCGCCAACATCTCCAGGATACTCACCTTCCTCTCCTTCATCTGGATACTCTCCAGCAAGTCCCAGCTACTCGCCAACATCTCCATCCTATTCTCCCACATCACCATCCTACTCCCCTACCTCCCCCTCCTATTCTCCAACCTCGCCAAGTTACAGCCCTTCTTCTCCATCTTATTCCCCAACGTCCCCATCTTATTCCCCAACCTCCCCATCGTATTCTCCAACTTCCCCATCGTATTCCCCCACATCCCCATCCTACTCACCTACCTCCCCATCCTATTCCCCAACATCTCCTTCCTACTCCCCAACCTCACCAAGTTACAGTCCGACATCCCCATCTTATTCCCCTACTTCCCCATCTTACTCCCCTACTTCCCCATCATATTCCCCATCTTCCCCCTCCTACTCCCCTACCTCGCCAAGTTACTCGCCGCAATCCCCATCATATTCACCAACATCCCCATCATACTCCCCTTCCTCCCCGAAGTATTCCCCTACATCCCCTAGTTATTCCCCTACATCGCCTAAGTACAGTCCAACATCTCCAACGTATTCCCCCACATCTCCTTCTTACTCTCCCGCATCACCTAAGTACTCCCCTACCTCCCCTTCCTACACCCCAACTTCCCCTACATACTCACCTACATCACCAACCTATTCTCCATCCTCTCCCCAGTACTCTCCTTCATCGCCACGATATACCCCTACCTCCCCTGAGTACTCCCCATCTTCTCCCAAGTATACCCCAGCCTCACCCAATTACTCCCCTACCTCTCCCAATTACTCCCCTACCTCCCCCAGCTACACACCTATGTCTGGCCACTACAGTCCCACATCTCCGAAGTACAGCCCCACGTCTAGTGGGCCATCGCCATCTCCTGGGTATTCCCCTACCTCACCACGTTACTCACCTACGTAATGGCATTATGGCATGGACATAAAACTGGCTACAACCAGTCAAAACCAGTTATACCTGGTAACAGAAACTCGAATATCACTCGAAACCAGTTATATCTGGTAATAAATCGCAGATTCAGGAACCTTGCTGAATCCTAGTTTCGTGCTTGAAGCAGTTGCTAAGCATGGACAAATTAAACCAAGAAAGAAAATAAATAAACAAAAAAACAAAGCTTACTTTATTAAATAAGTGACTTGTACTTAATGATTGGAATGTGTGGTGTAAATCGTGTCTAATACGGCTTTCGCAGGAAACAGTCGCGTGCTGGTATATCACTTCAATAACCAACGAATAGGCCTTATGCATGCTGATGTCATGCTTTTGTGATCACCACCAAGCATCACTTTGACACAACGTTACCTTTCCCCTGAGAATACCAAGACAATGGTCTAAATTAGTTAGTTATGGTAGTCTAGGCCAATGGGAAAGGCTTTACTGGATGGCAAACAATCTTCAAAAATTCAGAAACTCGGTTTTAGAAAGGGCCGACAATCGATTGGTGGTGGAAAACTACCAATATGGTACAAGTGCCTTTAAATAAATGAGGTCGGATAATTTTGAAACCCAGTACAACCACGTGACTGTATCCTTCAAAATGATCGTCTTTCAACCCTTCGTGTATATTAGTGATCACTTGATCTGCTAAGAACAGCGGAGTTGATGACATCATTCTTGATGCCAATCATGATCCGCCGTGTTACAGTGATTAGCAGAATTAATAACAGTAGCTGCAATTGTAGATTTGTATGCACATTATTCATATCTCATACCCGCGCGGGACGAAGTCTAGCTGGTAACAATGGTATCAGAGCGAGGCCAGTTGTCCCAGAGATCGCAAAAATTGGAGTCGGTCAGAAATGTCTTTGTTTCTGTCGTACTGCACTGTTGTGTTCTTTCATGTCATAAGGAAATGAACATTATTTTCCGCCATCGACTGGAGATTGTCTCTTGCTGTGACAATTGGCTTCGCGTTGATGCCTTTATGAATAAGGACAATTTGTTAGGCTTAATATGCGACGATGTATTTTCAAATTAGTGAGACTACTGTCTCGTAAAATTGAGTATATTCAAGATTGTTAGAAACACGTCTATTTACTGGCGTAGTAGCAGTTACGCAGGGATACTCGTGCCACGTGTCGACACGTCTATTAGGCGCGCCTGTGATTAGTGAATACTTTCAATAAGTTTCATCGTTTACTCTTCGCGTTGCGTATCATACATACGCGACTCGGGCTGTCTTCAGTTGAAGTTTTGTCATCCGTCAATTTCGCAAGTCGAGCCTTGGTGCTCTACCTCGATTCTATTGGATAAAATGCTAAATTAGATTAGTAGTTTTCGTCGGGGTTGCCAGTGCTGGGTTGAGTGACATCAGCCAGGTCGTTGTAATCGATTACGTTATAGTGAAGTATTGCGTTACGTATGTCACGCTACTCCGGATACAGAGTAACCATGGTTATTATTCTAGTGTTAAGACGAGGACATTTGCATGATGACGTCACACTACAACTACCAGCGTTTCTTTTAGTATTCTCAAAGGAGTTTTAAAAATCTGAATGAGAAAAATAATTCGAGAAGGATTCTAGTAGTTAAACGACGTCATAATGCAAATGTTCTATTGAGAAAGAATTGCAAATACACCTGTTTCAAAAAAGGTCAAAAGCGACAAGCCAAGACCGAAAAGGCCTTTGTTTGCCCTAAAAGCAAATAAAAGCTCACCTTGGGGGCTCACATCTGTGGCTCTTATTATCATAGTCGCAAACAGTCCTCCATTTTGGTAAAAACTGACCACATGCACATCTGAATAATGGCGCTTTCGTTCGGGTCTATTAAGAATCGCTAGAATAATACGTGTACACGTTCGTTTGGGAGCTATACTTATTCTGGAATACTTGGAATACATTCTGTGTATTCTGCTCCTAGAGGCAGAATAACTAGAATATTACTCCGGAATAAGAATATTTCGGAATGTTTCAAACGAACGGACCCTAAATTAATTACGATCACAAAAGTAATGGACGTCCTTTTTTGAACAGGTGTATGTCTGTCGGTCGTATTATTAATAGTTGCTATTATTGCTTATTAAATATCCCTTCATATAAGCCTTCAATTTCCAAGCAAATATCTCGGCGCTGCTCCCATTTTTCTTATCCACAAATAAGTCGTTTATTCAATTTGAAAATTCTGTGCAAACTTTAATATTGCTTTGTTTTTGGTTAGTGCTATTTGAAAACAGGTTTGTCAGTCCAAGTTTAACTTACTTTAAAATGGTTGGTGCGAAGATGGAAAGGTGCCTTGTTGAACATTAATATAATATGTCCGTGTTTGAGTCAACTGCAGTCATGTAAGAAATTGTAGGTTATTAATATAAGTCTAATAAAAGTATTTGTATAAAAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04990	RNA_pol_Rpb1_7	RNA polymerase Rpb1, domain 7	Domain	Interproscan
PF04998	RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	Domain	Interproscan
PF05001	RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000684	Repeat	RNA polymerase II, heptapeptide repeat, eukaryotic	Interproscan
IPR007073	Domain	RNA polymerase Rpb1, domain 7	Interproscan
IPR007081	Domain	RNA polymerase Rpb1, domain 5	Interproscan
IPR038593	Homologous_superfamily	RNA polymerase Rpb1, domain 7 superfamily	Interproscan
IPR045867	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001055	Molecular Function	RNA polymerase II activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-