Gene detail

Detailed information of Acti_003903-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_003903-T1	UNCHARACTERIZED	ScLC4GM_19	109839306	109883677	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_003903-T1

ATGCCTGCCAGAGTCCAAGTGATTTTCGGTGGAGGAGCTGAGGAGGAACAGATAGTTCCACTTATCAATGGCTGTGAAATCCTTGTTGCTACCCCTCCTTGCTTCCTACGCCTGCTGAAGAGAAGCTACACCACATTGGACAGACTATGCCACATTGTCTTTGATGATGCTGACTTCCTTGTTGAGGACTTCACTGCCGAGGTCAAGGAAATCATGAGACTGTATGGACGACTTCTTGTCTCCCAGCCAGGACGAATGGCTCCAAGACAAGCTACCATCATGTCCTCCTCCTGGACAGTGGGAGTAGCCTCTTTGGTGCGTGCCTACCTTGGAAACCCACTTGTGATCATTGCTGACAAAGTCGAGGCTAGCATATTTGCTGGTGTACAACAGGCTGTTAATGTTTGCTCTTTGAATACGCGACTTGGGGAACTGGTTGGTTTCTTGGATAACATCAAGAGTACCCACGAGGTTGTAGTGTTCACCTTCACTACTGATGAGGCAATGAAACTAGGTGATTTCCTAAAGGCCCATAACCACTATGTACTTGTGGCACACGAGTTTCTGCAACCCCAGCAGTTAACAGACATAAAGCGAGAGTGGAATACACCTCATTCTGGTGACTCAATGCCAATCCTAGTGATGACTGATGGAGTTATTGCACAGAATCATATCTCAATCCAGAACGCTTCTGTGGTGATCCACTATGATTTCCCATTAGCAAATGGCAAGCAGAAGTTTGGTGAAAGAATCCACTGTATGTCTCTTACCTACAGCATGTCAAAGGAGCATGGCTGTGTATCAGTGATATTCATAACTGAGAATTGCATCCGTCAGGCCACAATTGCACATCAGCTGCTCAGTAGGACTGCCAAAAAAAATACAACTACAGAAATTGTCCAGAATCAATCCCCTGAGAAATTCAACTTTGGTATAAGTCCATTATTGGAGCAAATTGTTGAAGTTGCCCAGCAGGCAAAGGAAGAACGCAAGAAACACATGGACCTATGTCATTTTTTGATGGCTTATGGAGCTTGTAGGGCTTTTCAAGACAAGCGTAAGTGTGTAATGAGGCATGTCATTATAAAGGATGCAGACTACCCCCACAACATCCCTACTTCAGGAACAGTGAAGATCCTTGTACTGCATGTGATGTGCGCATCTTGCCTCTGGGTTCGTATATTAGAACACAGGGATCCCAAAGGAGTTGTCATACCTTGCAAAGCTTTTGATAGTACACAGTTCCTAGAGATGACAATGGACATGGGCTTGTGGTATGCCAACGAGTCAAACAGAATCCAACAGGAATTGCCTAAAGTCTCTGATCTGTGTGCATTGGAGGATGGAGGCACTTACTATAGGGTTAAGGTGTGTGAAGTTACCTGTAAGGTTAGCCAGTCAGGAATGGCATCTGAAGTTGAGGTTCAGTTTGTTGATCAGGGGACATTTGCCTGCATCAAGGTGGAGCGGCTTCTCCATCTTCCATCTGCATTCTGCTCTCTGCCGTTCCAGGCTGTGCAAGTATTTGTTTGTCGGGTAAAACCACTTGACAAGGATCAGCATTGGACGATGAAGGCTAATAACACAGTCAAGAACATGGTTGAAGGCAAAGAACTGGAGGGCAAAGTTGTCTTGAGTTTGGGGAACACTATGTGGTTGGACCCTCTACTAGAGAGGCGAGTGCTAAAGAACATTAATGTCACCACAAACCTAAACAACATTAGGCTGGAGCTCCTTAAACAAGAACTGGCAACAGAAAACAAACAGCATGTCAAGAATCTGAAGAGTTTGTGTGAGGATATCATTGACCTGTCCATCTATGATGGGACTACAGGAGACATAAGCTGTGACTCATCAGCCTCGCTAGAGACTGCAGTGCTTGAGGAAGAGGGATTCCAGGATGTGTACATCTCGGCTGTGGAGAATCCTGCTCTGTTCTTTATACAACTGATGTCATCTACAGAAAGTTTGGATGATCTTCGCGACAAGATTGATGGTGGTGTTGCTTCAGTGGACAGCAGCAATGAGGAGATAGCTATCGGCTTGTTGTGTCTGGCTTGCTTTACAATTGATGACAAGTGGTACCGTGCACGAGTGCTTGGCATGAGGTGTGAGAATGAATACGATGTGTTCTATGTTGACTATGGAGACCGTGAGTGGGTGACAAGAGACAGAATCAAACCAGTGTGGGCAGACATCCTCAGACTACCCTTACAGGCCATAGAGTGTTCACTGGTTAATGTTTCTCCATTGGAGAATGACTGGTCTGTAGAAAACAGTGATGCATTCTGGGATATGACCAAAGACAAACTGCTCGTTGCTAAGGTCAAGTCTAAAGGTGGTTCCCTGGTGTCAGGTTGTCACCGTTTTGTTGTGGAGTTGTTTGACACCTCCACCATCCACGACATTGTGATCAGTCAGGAATTGGTGGCAGTGGCTCATGCACAGACATCACCTGAAGGCATTCAGACTTTGTTTCCCGATGCTGTAGTACAGTTTGAACTGCAAGAATATGAGCATGAGTATGAGAAAATCCCAAAGATGTGCTTACAGATTCTGAAGTCACGGGACTATTCCCAGAAACTGGACATTGCCAAGTCTTTACAGACCATTGTTATGAACAGCACAAGTGCCAAAGATGCTATTCGTGAGTATGGTGGTATTTCATGTCTGTGCCGTCTGCTGGTGTTAACCAGAGCACCAGTTGTCCAGGAACACTTACTGGTCAGCCTGGACTGTCTTACCTTTCAGAATGAGAGTAATTGTGAGGAAGCCAGGCGAGCAGGAGGACTTAAGACACTCTGCTATCTCTTAGAAAAGTCTACAAACACAACTGTACAGGAACGAGTGGCCTGGACATTGAAAAATGTATCTGCAACAGAAAGGAATAAAGACACAGTACGAGAACTTGGAGGGATCAAGATTTTGTGTAATGTGTTGAAAACAGCCATAGAGGACAAGCTTCAAGAGCACATTGCCTGGGCTCTGGAAGTACTTGCTACTGATAATAACAAGAACTGTAAGATGGTGTTCGAGTGTGGTGGTGTTCAGTCCCTTTGCAGCCTGGTTACCCACTCGACCAATCAACATGTCTTGGAGCGTACAACAAGGGCCTTGGCAGCCCTTGCACCCGAACCAAATAATCGTAACTGTATTCGTCAGTATGGTGGACTGGAGGCAATCTGTAAGAAAGTGCAGGACCATCCTGGGGAGGAGTTCCTAAGGATTGGTATGGGAACGCTGAAGACTCTTGTGAACAACAATCAACACAACAGAGACATTATGCGCGACTTGGGCATGATCACAACACTGCAGGCGGTGCATTCAGCACCTCAGAGGTACAGCTCCATCACCCGACGCCTGTGCTCAGACTTGCTGCAGAGGTTGGTTGGGTGGGCAGCATCTGGGATGCTGATGACACCCATTACACCTGGGACTGCCCCATCCTTGGTGAATGGGACACAGGTAACAAAACAAGTTGTGCACCTGCCTGTAGCTACGTGCAAATTAGGTTTTAATGGTTTAGAAGACTCTGATGATGATAACATGCCACCTCTTGAGGGTCCTGATGAAGAGGAGGATACCAAATGTTTGGGAGCGTTTGTACAGCCAGGAAATTCAGTGGATCTAAACAGGACAAAGAACAAGAAAGAGCTTAAAGTATCCCAGGGGTTCCCCTTCACATCGTCACAAGCTCGCAATGAAGGAGAACAAAAGAAGACAAGAAGAATGCCTCAGCGAACACAATTGATTCATGCGAAACCCATTGAGAAAAGCACCAATAATGAAGACAGTGGTGTCGACGAAGGACTAGATAGCGTTTGCGTTCATCCCTTCACGGCGTGGTCCCAGACCAAGGATATGGTACGCATTGCTGTCCGATTGCGTGGGGTGAAGAAGCAGCAAACAGAGTTACATGACAATGCAGTACACTTTAGAACTAAAATGCAGGGTAAGTCCTATCAATTGGATCTGGAACTGTATGACGGGATTATAACAAAGGAGAGCAAGGTGCATGTGAAGGGAGCCGAAGTACTCATCATACTGAAGAAAACAGCAGGTACTGCCTGGCCAAGACTACTCAAGACGAAAGACAAGCTCCCATACATCACAATTGATTTTGATCGATGGGAAGTCTGGTCTTCTTCCGAAGAAGAGGACACCTTGAAAAAGAAGCCTGTCAAACTTGTCACACCTAAACTGGCCTCAGCTAAGGGAAAGAAAACAAGAGTTATTCTACCAGAAATGGACACCAGTGGATCCAGTAGCACTGAAAGTGATGAGAATGACTTTGACGATGTTCTTGACCCTTTTTTGAAATTTGATTAG

Transcript

Acti_003903-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00514	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF00567	TUDOR	Tudor domain	Domain	Interproscan
PF04969	CS	CS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225	Repeat	Armadillo	Interproscan
IPR002999	Domain	Tudor domain	Interproscan
IPR007052	Domain	CS domain	Interproscan
IPR008978	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035437	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22655	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0042078	Biological Process	germ-line stem cell division	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-