Gene detail

Detailed information of Acti_003636-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_003636-T1	ATP-DEPENDENT RNA HELICASE	ScLC4GM_19	102421306	102436179	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_003636-T1

ATGATCACTCAAAGGAAGATAGTTATTCCTGGACTGAAGCGTTCTCTGTCGGAAACTGGAAGTCCATCTCCTGCAAAAAGGCCTGTATATCGCTCAGTTTCTGTATCGAATGGAAGTTCTCATACGAACGGCCAGAACGCACAGTCCCTTACCCTTCTTAGAAGACATAAGCTTAACCTGCCCATATTTTCTGCTAGAAGAAGCTTAATAGCCGAGATCCGTAACAGGAAAAATGTTATTGTCGTTGGGGAAACTGGCAGTGGAAAGACAACCCAAATACCTCAGTACTTACATGAGGCGAAACTTACAAGGAACGGACTAATCGCTTGCACGCAACCAAGGCGGGTTGCAGCTATTAGTATAGCTCAGCGCGTAGCTAGGGAAATGGGAGTCCTGGTTGGTGAAGAGGTTGGGTATACGGTTAGGTTTGAAGACGTTACCTCGGCAAAGACACGTGTAAAGTATATGACAGACGGCATGCTTCTCCGAGAAGCAATAGGCGACCCTTTGCTGAAGAAATATGTGGTAGTGATCCTAGATGAAGCACATGAAAGAACTATACATACGGATGTACTGTTTGGCATTGTGAAGGCTGCACAGAGGCAACGCAAGGAACAAGAAATGCAACCATTAAAGATTGTTGTTATGTCAGCTACATTGGATGCAGAGCATTTTTCGCATTATTTTGATGATGCTGCAGTGTTGTATATTGAGGGCAGGCAGCATCCAGTGCAAGTTATGTATGCAGCTGAGGCTCAGGTGGATTATATGCATGCTGCACTCATTACTGTCATGCAGCTACACCAGGAGCAGCCATCAGGTGGCGACATTCTGGTATTCTTGACAGGACAAGAGGAGATAGAATCCCTTGCAAAACTGGTCAGTGATTGTGCACAGCACTGTCCTCCAGACTGCCCCAAGTTGGTAGTGTGTCCCATGTTTGCAGCCCTACCATCTCGGCAACAAATGCAAGTGTTTATACCAGCAGCACCAGGCTCACGTAAGGTTATCTTATCCACCAATATTGCTGAGACATCTGTGACCATTCCTGGAGTAAAGTATGTCATTGATACTGGATTTGTCAAAGCCAAAGGTTTTCATCCCCAAACTGGTCTTGACATGTTGAAGGTCCAACCAGTCTCCAAGGCACAGGCTCGTCAGAGACTTGGACGTGCTGGCCGTGAGTGTAGTGGGATTTGCTACCGACTTTACATAGAGGACCAGTTTGAAAAGCTTGACGAGATGACTGTACCAGAGATCCAACGATGCAACTTGGCAAATGTTATACTGCAGTTAATGGCCATTGGTATCAATGATGTCAGGAACTTTGACTTTATGGACAAGCCATTGACAGAAGCAATTGAGGGTGCCCTTGAGAAACTTGAGATACTGGAAGCAGTGGAGAAAAGAGGCAGTACATTCAAGCTTACTATCCTCGGTCATAAAATGGCTGCATTTCCACTTGAACCACGTCTCTCCAAAGTCATCCTTGCGTCACAAGACCTCGGTTGTACGGAAGAAATCATCACTATAGTTGCTCTTCTCTCTGTTGACTCCATCATATACACTCCACACAGCAAGCGCGACCAAGCAAATGCCATCCGCAAGAAATTCCTCTCCTCCGAGGGTGACCAGATTACTCTTCTTAACATCTTCCGTGCATATAAAGGATGTGGGATGAACAAAAACTGGTGCTTTGATCATTTCATTAACACTCGGGTCATGAAACTTGTGATGGACATTCGTAAGCAGCTGAGAGAAATTTGTGTGCGCCTTGATATTACTCTACAATCTTGTGGTAAGGATACAAATGTTATACGTCAGTGTTTATCAAGGGGGTTGTTTATGAATTCTGCAGAGCTACAACTTGACGGGACATATCAGACAGTGACACATCACCAGATAGTTGCAATTCATCCATCGTCTGCACTCTTTACATCGAAGGTGCCATACGTTGTTTACAATGAGCTGACACATACTTCCAAGTGCTATATGAGAGATGTATGTGTCGTCACTGCTGATTGGTTGCTTGAAGCTGCACCGAGGTATTTTGAGGAACATAGACTCAAGCCACAGCCTAGAGCCATTACATCTTGA

Transcript

Acti_003636-T1

GGCCATTTCCGCCCAATCCAAGATGGCGTCTCCGTAAGAACGATTAAAAATCAGCGGTTAAACACGTACGTTGGACGCCAATTTATATTGCTTCAAAACCAGGGCACAGCTCTCTAAAGGTATGATCACTCAAAGGAAGATAGTTATTCCTGGACTGAAGCGTTCTCTGTCGGAAACTGGAAGTCCATCTCCTGCAAAAAGGCCTGTATATCGCTCAGTTTCTGTATCGAATGGAAGTTCTCATACGAACGGCCAGAACGCACAGTCCCTTACCCTTCTTAGAAGACATAAGCTTAACCTGCCCATATTTTCTGCTAGAAGAAGCTTAATAGCCGAGATCCGTAACAGGAAAAATGTTATTGTCGTTGGGGAAACTGGCAGTGGAAAGACAACCCAAATACCTCAGTACTTACATGAGGCGAAACTTACAAGGAACGGACTAATCGCTTGCACGCAACCAAGGCGGGTTGCAGCTATTAGTATAGCTCAGCGCGTAGCTAGGGAAATGGGAGTCCTGGTTGGTGAAGAGGTTGGGTATACGGTTAGGTTTGAAGACGTTACCTCGGCAAAGACACGTGTAAAGTATATGACAGACGGCATGCTTCTCCGAGAAGCAATAGGCGACCCTTTGCTGAAGAAATATGTGGTAGTGATCCTAGATGAAGCACATGAAAGAACTATACATACGGATGTACTGTTTGGCATTGTGAAGGCTGCACAGAGGCAACGCAAGGAACAAGAAATGCAACCATTAAAGATTGTTGTTATGTCAGCTACATTGGATGCAGAGCATTTTTCGCATTATTTTGATGATGCTGCAGTGTTGTATATTGAGGGCAGGCAGCATCCAGTGCAAGTTATGTATGCAGCTGAGGCTCAGGTGGATTATATGCATGCTGCACTCATTACTGTCATGCAGCTACACCAGGAGCAGCCATCAGGTGGCGACATTCTGGTATTCTTGACAGGACAAGAGGAGATAGAATCCCTTGCAAAACTGGTCAGTGATTGTGCACAGCACTGTCCTCCAGACTGCCCCAAGTTGGTAGTGTGTCCCATGTTTGCAGCCCTACCATCTCGGCAACAAATGCAAGTGTTTATACCAGCAGCACCAGGCTCACGTAAGGTTATCTTATCCACCAATATTGCTGAGACATCTGTGACCATTCCTGGAGTAAAGTATGTCATTGATACTGGATTTGTCAAAGCCAAAGGTTTTCATCCCCAAACTGGTCTTGACATGTTGAAGGTCCAACCAGTCTCCAAGGCACAGGCTCGTCAGAGACTTGGACGTGCTGGCCGTGAGTGTAGTGGGATTTGCTACCGACTTTACATAGAGGACCAGTTTGAAAAGCTTGACGAGATGACTGTACCAGAGATCCAACGATGCAACTTGGCAAATGTTATACTGCAGTTAATGGCCATTGGTATCAATGATGTCAGGAACTTTGACTTTATGGACAAGCCATTGACAGAAGCAATTGAGGGTGCCCTTGAGAAACTTGAGATACTGGAAGCAGTGGAGAAAAGAGGCAGTACATTCAAGCTTACTATCCTCGGTCATAAAATGGCTGCATTTCCACTTGAACCACGTCTCTCCAAAGTCATCCTTGCGTCACAAGACCTCGGTTGTACGGAAGAAATCATCACTATAGTTGCTCTTCTCTCTGTTGACTCCATCATATACACTCCACACAGCAAGCGCGACCAAGCAAATGCCATCCGCAAGAAATTCCTCTCCTCCGAGGGTGACCAGATTACTCTTCTTAACATCTTCCGTGCATATAAAGGATGTGGGATGAACAAAAACTGGTGCTTTGATCATTTCATTAACACTCGGGTCATGAAACTTGTGATGGACATTCGTAAGCAGCTGAGAGAAATTTGTGTGCGCCTTGATATTACTCTACAATCTTGTGGTAAGGATACAAATGTTATACGTCAGTGTTTATCAAGGGGGTTGTTTATGAATTCTGCAGAGCTACAACTTGACGGGACATATCAGACAGTGACACATCACCAGATAGTTGCAATTCATCCATCGTCTGCACTCTTTACATCGAAGGTGCCATACGTTGTTTACAATGAGCTGACACATACTTCCAAGTGCTATATGAGAGATGTATGTGTCGTCACTGCTGATTGGTTGCTTGAAGCTGCACCGAGGTATTTTGAGGAACATAGACTCAAGCCACAGCCTAGAGCCATTACATCTTGATAATAGTTATCATTAATTACTAAATCATAAATGAGTATTGTATTAGCCAGCTTTACACAAACTATTTTCATTAGACTGGCAAGATGCATGAACATGGATGAATTATATTAATCTCATTTTTTATTTGCTTGGACAGAAATTAAAATTGCATTTTCTAGTTAATAAAGTGGAATGTTTTCATACATAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0045943	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-