Gene detail

Detailed information of Acti_003621-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_003621-T1	PA14 DOMAIN-CONTAINING PROTEIN	ScLC4GM_19	102069473	102098435	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_003621-T1

CAGACCGGTTTACACCGGTTTACGGAAACCGGTCAAAATTTCCAGATTTTTTTAGTAACCTTAACAACATTCGATTAAAACTCTCTTTGAGAGAGCGGGAGGAGGGAAAGAGGGTTCAGTAAAATTTCCAATTTTGGAGTTTGAGTTGGGAAGTCGGAAACCGGTCAGATTTTTTTCTGGATCCGCGCCTGTAGCTCATGTAGTATTTACCAGCGCATCATGAAGCTACACTTGGCTTTGACTGTACCTTCGGTGCTACTGCTGGCAAAGATTTCTTCATCAGCCGATTGTCGCCAAATCAATTTCCCTGCACCACTTCAGGACAAAACCTTGCTACGAAACGAGCTCGAAAACTTCATCGTACACACTGTGACGCATTGCCGAATAAACTGCTTTTACAACCATGATTGTGTCTCGTTCAACATCAGTCCATCGCCAACCCAACCCGGAATGCTGGTTTGCCAGCTGAACAAGTTCGACCGCTTCCAGAAACCGAACGATTTTGAAGACAAGCAGGACTTTACTTACTGGGGAATTATAAAGAATGCATGTGGCAGCAGTCCTTGTGCAGCTAACGCTTCCTGCCAGGCAGGGTTTGGTCCATCGGGATATAAATGTATTTGTCCAATAGGGTACACTGGGATACATTGCAAAACAGACATTAACGAGTGCAATGACAACAGCCACAGTTGCAATAAACAAGACGCTGTTTGTACCAATACTATTGGATCATACAAGTGTTCTTGCAAACCTGGTTTTAAGGGGGATGGACACTCTTGCCATGACATTAACGAGTGCAATGACAACAGCCACAGTTGCAATAAACAAGACGCTGTTTGTACCAATACTATTGGATCATACAAGTGTTCTTGCAAACCTGATTTTAAGGGGGATGGACACTCTTGCCATGGAAATGGAGCATCTGCAAACTCTCCAGCCAGAACTTGCGAGGATCTCCTAACTCGCATTACCAACACGACTACTGGAGTGTACTGGATCGATCCTGATTGGAATAGCCACACGAATGCATACCGCGTGTACTGTGACATGACCACGGACGCTGGAGGCTGGACACTAGTTTGGTCCTACAGGTTCACCAACTATGCTAATTTTCAAAGCAAGAACAACAGGGTCACTCCTCGACCGGTCGGCTTCGGACATGGCACCTCCTCGCGAACTCCTCCTTTGAGTGAAACTACTTACAACGCCCTGCAATGGAAGAAATGGCATAGGATTGGAACCGAATTCCTGGTCAAGTCAAACATCAATAATTGGATTTCGTGTACTCCAGCTGGTGGTAGTTTTGTTACACTGCAAACTGGAGAAATAACTTGCAAGGTTGTTAAGGTTGTAGCCGCATCGTGTCCCACTGTTGTCCCTAATAAGCTATCTTATCGCTCTTGTGCAGTTCGGCTTGAAGTAGCCAGTATGGGAATATACTACAACTTTGACACTTGCCTTAAATACCAATGGCCTGTTCATGATCCATGTGGGAAAAGTAGCGCAAACCACGTTCAAGGTGTTGCAAACCCCCACGGCAATATCTACATACGATAGTTGGTGCATTACTCGGTTTGAATCATTTCTAGGCACCGTCTCTATAGTGCTACTGTTTATTGCTCGGGTCCTCATGTTGAAATACTCGAGGCTCATGGTGATGCTTCTCGTTCGGTGCTGGTCAGCGGTGCTTTTTGGACTTTTATGTTTCCCTTTTTAGACTTGCACATTTTACATTTTGTTCTTACAAAACAGTATAATACATAAGCAATTACCACCAATAGCATAGCTAATCGAGGCTGGGGTAAAGAAATAGAGGACTGCATGGGTGTTTAGAGGGAGAGTTTACAAGTAGTAGTAAATAATGGCAAAGAGAAAAAAAATACAAAAAATTACAACTGCAATATATAATATACAAAAGATACAAGGGTTATTTCGTGTTATTATAGCATAAGCAGAGGACGAGTTACAGCACTTAATGTTGTATAAATAATTATTAGAGTATTGGGAAACCTTTTGAATGATTTGAGTGATGTCAAGATAGATATCTACATCAGTAAGGATCGTGCAATGTAATATTGCTTTAAAAAGTGCATTTAAGCCCTGGCCAGTTATGCTATATTTGACAGCTTAGACCTTAAAAGGTAGGGGGAAAATCCGATTTCTTTAAATAAAAATGTTTTCATTAATTTTTTAGCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR052235	Family	Nephronectin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24050	PA14 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-