Gene detail

Detailed information of Acti_003486-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_003486-T1	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1	ScLC4GM_19	97662265	97691381	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_003486-T1

GGGATTTTAAAATACCCCATTCTTTCTTGAGCAAATGTATGCAGAGTAGATGAAAAGCTGGCTAGGTGTTGCATGCCACAGCTGCTAATGAGAAGATTGCAGTTGTGCGCCATTTGTTGGGGCTTGCCTACACGCTACGATTAGCCTACACCTTGTTTTTCAACGGATTCTTTTCAACGTTTGACGGCGAAAAAGAAGTTAAAGTTTAACAATGGGCAATAAGCAATCTGGTGTAGAGAAGCAGAAAGACGAGGAGTCTCACGAGTCCGCCCAAGAAGGAGAAAATATCAAAGAAGTCACACCACAACACTTTGCCTTAGATCAAAACACCAAGGACATTAGCAAAGCCACTGTGGAAGACTTAACTGGTATAGGGCTTCCAGAAGAACTGGCGGGAAAGCTCGCTCTGCAGGGGAACAAAGGAAAGCTTAAAAGTGTAAGCGATGTTGTTGTTGTCTTGGAAAATAGTGGTAAAAGCTGCAAGGTCGAGTTCGATGAAGAATTTTTCGTGAAGATCGATAGCTCGGGGAGAGTCGTTATTGAGCGCAAAGTGCTTGAACCAGCGAAAAAGAAACGAAGCTTTAGTTTACGTTGGTCACGAAGTGCTAAGGCTAAAAGTGAGCAACAAGGCGATACTTCGGTTTCAGAGCTTGATCAAGAACAACAGGAGCGGTCGGAGAAAAAAAGGGCGTCCTTCAAGTTCAGTTGGTCAATCCAGAAACGATCAAAGAGTTCGAAGAAAGACCAAGAAACGGAGAGTGACCGTGCCGCCATTAAAGAGAACGAAGTTAACTTCGACGACCAAGTGAATATCAACACAGCAACGGAAGAGGAACTAGAAGTCATCAAAGGCATTGGACCTGAAGTAGCTAAAAGGATTGTTGCATATCGTGAAGAACATGGGCCATTCCATGAAGTGGAAGAATTGTCAGTGGTTAGAGGTGTGAGCAAAAGGCTTCTGAAAAACGTAGCTACTGAGCTGACAGTTGGTAATGTTGGAGAGTGTGGTGACCAGAAAGTTGAGACCCATATGGGACCCAAGTTTAAGCTGAATGCTGTCAGTTCAGGGGGAAGCCTCAAGCATAAGGGGCGCGACATTGTTCGATTGCTATCTTGGAATCTTCAATGTTTCAATGAGGATAAGGCTTCTAATGAGGGGGTTCGTGAAGTCATTTGCAGGACAATCTTGGAAAGTGGAGTGAGTATTGCTGCCTTTCAGGAAATTGCTGATGAAGAAGCTTTGATAAAGATAAAAGATGAGTTGAACAACCCAACGCTGAAGGGTGTAAAGAAGAGTAAGGGACAGCATGGACACTGGGAGTGTATAACATCTGATGTAGCAGGCACTATGTTTAGGTCTAGGGAGTACAATGGATTTTTATGGAACACAAGTCGTGACATAGAACTCAAAAGCTCAGCCTTACTGGAGAAACCAAAGAAGGGGAAGAAGCAGTTTGCCAGGAGGCCGTTCCTTGGCTTCTTTAAGGCCAATAGACTAGACTTTGTTGTAGTCAGTGTCCATCTCAAGGCAACAGGATTTGACAATGAAGACATCAGCCGGCTACAGAAAGAGCTTGGGAGAATTCCAGATATCATCACTGCCATAAATGATCAGATTCCAGGTGAAAAGGACATGATTATTGCTGGTGACTTTAATCTGAATCCAGACGAGAAAGAATTTGATTCATTCCGTGAGTCAGGACTGACCAACCTCATTCCTGATACCATGTTGACCAACATCAGCATGTCTAACATGGATGGCTCAAAGTGCTATGACAACATATGGGTTAGTGACCATGCAAAGGACAAGGCATACTCTGGGAGAGCAGGTGTTATTCGCGATGGCATGAGTAATCCTAAGATTCCCGATGGTTGGAAATGGGGTGGTGTTGTATCAGACCACTGTCCTGTATGGGCCGAGTTCTACTGTGACCGCGACACTGACCAAAGTACTGGGGAGGAGAATGTAGAAGACATCACTATAGCAACTGAATAAGTAGTATATTCCCTTCCCCTTTTTGGACTTGTTGTGCAATACATGGCAGTATTTTAAGAGGTCTAGATTAAACAATAAATGATTATGATTCCATAGAATACTCATTTGAGAAACTTAGGGTTCATTTGATTGACTGTATTCCAGAAAGAGTAAGATAATTTAAGGGGTGAGCATGAAAACGGCCTATGTGACTTTTTAGTGATTCAAAATCTTCAAATTTGCCTGAAAACTTCTATATAACCAGTTTAACTACTGTTTATTACTGTTTTGGCATTTATATCGCGATTACACCGGTAAAAACCTAAAATTCTTCACATAGAAACGGTCAATGTTTGCTTGACAACGATGCTTTCGTCTCCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF12836	HHH_3	Helix-hairpin-helix motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003583	Domain	Helix-hairpin-helix DNA-binding motif, class 1	Interproscan
IPR004509	Domain	Competence protein ComEA, helix-hairpin-helix domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR010994	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR051675	Family	Endonuclease/exonuclease/phosphatase family domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21180	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0046658	Cellular Component	obsolete anchored component of plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-