Gene detail

Detailed information of Acti_003422-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_003422-T1	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	ScLC4GM_19	95649955	95680805	-

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_003422-T1

ATGGCCCAGCCTTCGCAAGGCATTCAACTGGAGACTGTTTTCGCCGATTGTCGAGCTTTGGTGTTTCACTGCAGTACTGAAGTTCAGCAATGGACGCCAGTTGGTGAAACTGGATCCTACTCCAGAGTGCAACTTATTCAGTACAAACTACCTCAAGGAAATATTTCCTATCGGATTTATGGACGTTTAGAAACCAGTGGAAGGGTAATCTTGGACCATGTGTTACAACCATCGTTTGTATACAGTGTGACTGAACCTACTTGGCACCAGATACAAGTTGACATAAAAAACATTTATGGTTTAAAGCTCAGTCCTGAGTCAGATGGTGGTAAATTTTCTGTTGTGTTACAGAATTTGCTAAGGTCATTACAGGCCACAGCAGTATCATCACAAGGTACGAAAGTGCCATTTCCGCCACCTTTTCCTAGAGAAGCTTGGACACCCAGTACAGTACCCACTCAATTAACACAGAGACGGTCACCAGAACCTCCTAGGGACCCTGTGATCTCCCAGCAGATTAGACCCACAGGAGTCCCCCAAGAATATCATTGGGACCCAGTGGTAAATAACTATGTAGTGATACAACACCCTGGAGTTACGATGGAGCCGCAGATTCCTCCACTAACAAGTATAACTCCTCCTCCACAAAGGATACAGACTGCAGAGGCACCAAGATCCTCAAATGTTACCCACAGCCGTCGTATGTATGAAGAACAAGTTGACTCGCTGTGTGGATCTCTCACCTCGGCAATCGCAGAAGGAGACATGTTGCGTGCCACAGAAGCCGTCAAACTCATGGCAGCTGACCGACTCTCACTTAGCATTAAGCTTAAAAACCCAATGCAATTAACAGTGGATCCTAGTAATGATGATACTATAAGTTTGCGAGTTGTGGTTGAAGACAGTGAAACCTCTGGAGGAGCCTTCACCATGAAAGTATCACCTAATACTACAATAGAGACACTAAAAGAAGAGGTTTTAGAAAGATATGGCTTTCCACTAAAGGTCCAAAAGTGGATAATAGGGAAGATGATGCGAAAATCTAAGGAGACTCTGAATGAATGTCACGTGAGGCAAAATGGGTGTACTGCGTTCTTGTACTTAGTATCTGGTAGAAATGTAGGACTTACAAGAGCTGACATAGAAGCTCTCCAGCGCGGAGAATATCCAAGAGTGCAACCATTGACAACAGCACCAGCTAGGGGGGTAATTCCAAGTGAAGCCCAAAGACTATTGAATGGGGTTTCAGCTAGTGAACTGGCACCAGCGGCACCAGCAATGCATCATGCATCAAGTGTGCACTCACTAGCATCAGGTAATCAGTCAGGGAATGGTTCGATGGGAGGAAGTTTACCATCTGGTAATCTTTACGAGGCTGGTCCATTTCCTTCAGGTGCGAACATTCCACCTTCTCCAAGTATTGCTCAGTTAACAACTACACTGACTGGTACTGACAATGAACGGGCACATCTTCAGGCATCAAACCTCCAAGGGCTTGGAATGGGAAGCATACATAACTTAACACAATTGTTTCGGCAGCTACCTGCACAAAATCAAATGAACCCAATGTACGGAGAGCAATTTCTACCAGAGCAAGAAATACTCAACGATGCTTCTCGTGAACCTCGTGGTGTCCCAGTTGAGGACTCAGAGGAGAACGAGGGCTGGGCATGCTCCCAGTGTACCTATAAAAATTCTCCTACACGACCTGGCTGTGAGATGTGTGGGTCTGAAAGACCCAGAGATTACGTGGTGCCACAGAATGTTAACCTTGATGACCAGGAAAGGAGTCGCCTACAAGAAGAACACAGACAGACGGAACTTTTTAATGAGGCACAAGAAAGACAGAGAAACGAGCAAGCCATCGCGCGCGAGCAGAATTTTAACACTTTAATACAAACTGCTCAGCAGAACCTCATTCTGAATCAAGAGGAGTTTGACTGTGCGATCTGCTTCTCTACAGTCCAACCGGGCGAGGGAGTGATCCTACGGGAATGTCTACACAGGTTTTGCATGGAATGCTTACGAGAACATATCCGTAATTGCACCGATCCGGAAGTCCAGTGTCCATTCCAGGATAACGAGTTTGCGTGTCATTTTGTTATAACGGCACAAGAGGTCAAAGCACTTCTTCCCGAGGAAGACTTTAATAAGTTTCTGAATCGCAGCTTAGCAACAGCCGAGTGTCAGGCCGCGAACAGTTTCCACTGTAAAACACCTAACTGCCCTGGCTGGTGTATCTACGAGGATAACGTCAACGCATTCCACTGTCCCGTATGTTCAAAAGTGAATTGTTTGACGTGTAAGGCGATTCATTTCCCCGACATGAATTGTAAGGAATACCAAGAGGATTTGAAGAGGAGAGCAGAAAATGATGATGCTGCTCGCCAAACTCAACAATTCCTCGAGGAAATGATAGTTAAAGGAGACGCCATGAAATGCCCACAGTGCGAGATCATCCTCGTTAAGAAGGACGGCTGTGATTGGATGCGGTGCAGTATGTGTCGATTGGAAATCTGTTGGGCCACTCGAGGGCCGCGGTGGGGACCTCAGGGTACTGGTGATATAAGTGCAGGTTGCAAATGCCGTGTGGGAGGCAAGAAATGCCATTCACAATGCCGCAACTGCCACTGA

Transcript

Acti_003422-T1

AACAAAACGAAAGCAATTCGGGAAAATGCTCAAAGTCGCAGATACACTTCCGGTAATGACTTGCTTAAACTAACTTCTCTCGCTCGGTTGTTGCTTAATAAATGGCCCAGCCTTCGCAAGGCATTCAACTGGAGACTGTTTTCGCCGATTGTCGAGCTTTGGTGTTTCACTGCAGTACTGAAGTTCAGCAATGGACGCCAGTTGGTGAAACTGGATCCTACTCCAGAGTGCAACTTATTCAGTACAAACTACCTCAAGGAAATATTTCCTATCGGATTTATGGACGTTTAGAAACCAGTGGAAGGGTAATCTTGGACCATGTGTTACAACCATCGTTTGTATACAGTGTGACTGAACCTACTTGGCACCAGATACAAGTTGACATAAAAAACATTTATGGTTTAAAGCTCAGTCCTGAGTCAGATGGTGGTAAATTTTCTGTTGTGTTACAGAATTTGCTAAGGTCATTACAGGCCACAGCAGTATCATCACAAGGTACGAAAGTGCCATTTCCGCCACCTTTTCCTAGAGAAGCTTGGACACCCAGTACAGTACCCACTCAATTAACACAGAGACGGTCACCAGAACCTCCTAGGGACCCTGTGATCTCCCAGCAGATTAGACCCACAGGAGTCCCCCAAGAATATCATTGGGACCCAGTGGTAAATAACTATGTAGTGATACAACACCCTGGAGTTACGATGGAGCCGCAGATTCCTCCACTAACAAGTATAACTCCTCCTCCACAAAGGATACAGACTGCAGAGGCACCAAGATCCTCAAATGTTACCCACAGCCGTCGTATGTATGAAGAACAAGTTGACTCGCTGTGTGGATCTCTCACCTCGGCAATCGCAGAAGGAGACATGTTGCGTGCCACAGAAGCCGTCAAACTCATGGCAGCTGACCGACTCTCACTTAGCATTAAGCTTAAAAACCCAATGCAATTAACAGTGGATCCTAGTAATGATGATACTATAAGTTTGCGAGTTGTGGTTGAAGACAGTGAAACCTCTGGAGGAGCCTTCACCATGAAAGTATCACCTAATACTACAATAGAGACACTAAAAGAAGAGGTTTTAGAAAGATATGGCTTTCCACTAAAGGTCCAAAAGTGGATAATAGGGAAGATGATGCGAAAATCTAAGGAGACTCTGAATGAATGTCACGTGAGGCAAAATGGGTGTACTGCGTTCTTGTACTTAGTATCTGGTAGAAATGTAGGACTTACAAGAGCTGACATAGAAGCTCTCCAGCGCGGAGAATATCCAAGAGTGCAACCATTGACAACAGCACCAGCTAGGGGGGTAATTCCAAGTGAAGCCCAAAGACTATTGAATGGGGTTTCAGCTAGTGAACTGGCACCAGCGGCACCAGCAATGCATCATGCATCAAGTGTGCACTCACTAGCATCAGGTAATCAGTCAGGGAATGGTTCGATGGGAGGAAGTTTACCATCTGGTAATCTTTACGAGGCTGGTCCATTTCCTTCAGGTGCGAACATTCCACCTTCTCCAAGTATTGCTCAGTTAACAACTACACTGACTGGTACTGACAATGAACGGGCACATCTTCAGGCATCAAACCTCCAAGGGCTTGGAATGGGAAGCATACATAACTTAACACAATTGTTTCGGCAGCTACCTGCACAAAATCAAATGAACCCAATGTACGGAGAGCAATTTCTACCAGAGCAAGAAATACTCAACGATGCTTCTCGTGAACCTCGTGGTGTCCCAGTTGAGGACTCAGAGGAGAACGAGGGCTGGGCATGCTCCCAGTGTACCTATAAAAATTCTCCTACACGACCTGGCTGTGAGATGTGTGGGTCTGAAAGACCCAGAGATTACGTGGTGCCACAGAATGTTAACCTTGATGACCAGGAAAGGAGTCGCCTACAAGAAGAACACAGACAGACGGAACTTTTTAATGAGGCACAAGAAAGACAGAGAAACGAGCAAGCCATCGCGCGCGAGCAGAATTTTAACACTTTAATACAAACTGCTCAGCAGAACCTCATTCTGAATCAAGAGGAGTTTGACTGTGCGATCTGCTTCTCTACAGTCCAACCGGGCGAGGGAGTGATCCTACGGGAATGTCTACACAGGTTTTGCATGGAATGCTTACGAGAACATATCCGTAATTGCACCGATCCGGAAGTCCAGTGTCCATTCCAGGATAACGAGTTTGCGTGTCATTTTGTTATAACGGCACAAGAGGTCAAAGCACTTCTTCCCGAGGAAGACTTTAATAAGTTTCTGAATCGCAGCTTAGCAACAGCCGAGTGTCAGGCCGCGAACAGTTTCCACTGTAAAACACCTAACTGCCCTGGCTGGTGTATCTACGAGGATAACGTCAACGCATTCCACTGTCCCGTATGTTCAAAAGTGAATTGTTTGACGTGTAAGGCGATTCATTTCCCCGACATGAATTGTAAGGAATACCAAGAGGATTTGAAGAGGAGAGCAGAAAATGATGATGCTGCTCGCCAAACTCAACAATTCCTCGAGGAAATGATAGTTAAAGGAGACGCCATGAAATGCCCACAGTGCGAGATCATCCTCGTTAAGAAGGACGGCTGTGATTGGATGCGGTGCAGTATGTGTCGATTGGAAATCTGTTGGGCCACTCGAGGGCCGCGGTGGGGACCTCAGGGTACTGGTGATATAAGTGCAGGTTGCAAATGCCGTGTGGGAGGCAAGAAATGCCATTCACAATGCCGCAACTGCCACTGAGAGATTTGAACGCTGAAACGACGCATAGAGTTGAGGGATTACGTAGATTTTGAATCACAGGAGGAAATATAGGCGATGGGTCTGCCACCTGGAAAAACGACAGCCACT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF00568	WH1	WH1 domain	Domain	Interproscan
PF00641	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR000697	Domain	WH1/EVH1 domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR047557	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, Rcat domain	Interproscan
IPR047558	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, BRcat domain	Interproscan
IPR047559	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, modified RING finger, HC subclass	Interproscan
IPR051628	Family	Linear Ubiquitination-Associated E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22770	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0071797	Cellular Component	LUBAC complex	Interproscan
GO:0097039	Biological Process	protein linear polyubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-