Gene detail

Detailed information of Acti_002542-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_002542-T1	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	ScLC4GM_19	70804630	70853458	-

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_002542-T1

ATGGATACAACAACGGAGCAAACGACAACAAACTCGTTGAGTTTATTCAAAGAACTCGTAGAATCCATCGAGCAGAGTAAAACTCCAGACGAATACCAGGAATTCCGTAGCGAGGAGGAGCTAAACAGTCTGAAGCAAACCAGTTCTCTGGTGGCTAAATTCCAAAAAGAGGCTCTGGACGAGAAGCAAAACCGTGTTTCTGCTGAGCTACAAGCTCAGGAAAAGGATAGGCTAGCATCGGATGCTTGGAGGATCATCACAGCCTTGAAAAAGGACAAGTACTCTTTAGAGCTACAAGTAGAGAAGTTGAAAAGCGAAAAGGATAAAGTTGTTAGATCAACTCTTGGAAGTGAAGATCACCCAAGAAAACCGATGATAGCATTTACGACTAGGGATCTCAATGCTAAAAGAATGGAATCCTTGGATGGCAAGAAGAACCTCGATTTAAAGGAAGCTTTACTGAAGGAATCCCTGCCTTCTTGTGAAATAGCGACAGGTAATTCTCAAGAAGTGAACTATAACGGGAAGGATCCTGTTGATGAGGATACGGTGGGAGCTTGTAATGAGTGCACGGTCGGTGATGATGTTATCAACGCTTTGGAGGCAAAGCAACAGCACAATGAAAATGGCAAGATGGAAACAGCAGGAGAAGTCTATGAGAGAAAGGATCACATTGAAAATACTTCAAAGGACGCAAAGAGATTTGAAACCAATAGAGAACAACGCATAAGTGATGGTATAAAGTCATGGGGTGTAAGACACCATCCAAAAGGTGGAACATTAAAAGAGAGGCCCACCAATGAGATCCACGAACCTACCACTGAGATGAGATCAAATGTTAAGAATCACTGTAGGTTTGATAAGAACAGCGCCCCGAGTGATCTTATTACTATCTGGGCAGCGAAACCTCGCAAGGAAAGGAACCCGATAACTCAGGAGATGGCGACAATGGGTGAACAAGAACGTAGATCAACAGAGAATAACACCGAGATGTGCTCATCGGACGGTGACCTCGCATCAGAAAAACCTCCCAAGACTTTGGCAGCAAAACCTGTCCGTGCTGCAAATGGTTTTGTGAAATCTGGCAAACCTGAGACTGATCAGAGAAGACGGGTTACTATTGATGGAATGACAAGAAATAGGGTGCCTGGAATATATACCAGAGATCACGGTCAAAACGATGGAACAAGAAGCTCGCTGTCAAAACCTGGCACGTGTGAGGGGATAGTAACTAATGATAGGAAGGAATTGAAAGAGAGAAGGGCAACGATTGACCCGCCTTCAATGGGCAGAGAGTCTATTGTACCAAACAGAGGTTTTGTCAAGAGTGACGAAAATAAGTATTTGCTGGGAAGAAATGCCAGGGTCAACGAAGCCAAAACGGCAGGTGATTCCAGGAAAGCGGTGCGAGAGAGGGAATGTGCTGATGGCATGGCTACAAAACCTGCCAGACCTCTGCTACGAAGATCGTTACCTGTGAATAACAAATTGAAGAAAATCTACAAGGAGAGTTGCCGTGGAAAGAAAGACATCTTGAACAAGTCTACTAAAGCTGCCCTGGAAGACATTTTGAGGAATCACATCAATGCTAATCAACAAGAAAGGACGCAATCTGCAATTGAAAATAAGGATTTTCAGTGTGTAAAAGCAGACGTTGGGACACCCAGAGGACTACCGGGTGGTATTGTTGGCAAACGAATTCAGGACTTGGCGAAGAGGTTGAAGATCGGTCACAGTACTGTTGCTGCTAGAAATGACGACAGGATGCAGTCTGCAAATCTTAGGGATCCTTGTCCCGGACTTTGCGGGCTGGAAAACCTCGGCAACTCCTGTTTCATGAATGCTGGTCTACAATGTCTTCTTGTTGTCAAGCCATTCCACAGATTCTTCTTGAGTGGTGGACACAAGAATCGCGGGAGAATGATCTTCAACAACCAGCGGAAGCCTCGTGTGAGCGAGTTGCTGGGTCAGTTGATGGAGAAGGTGTGGAGTGGCTGCTACCTGACGTGCGAGCCAGCAGCACTCTTCAAGTACGTGCAGAGCGCGTTTCCACAACTTGCGGGCTTCAATCAGCATGACTGCCAGGAGTTTCTTGCCCTTTTTCTGGACGCTCTTCACCAGGAACTGAACACTGCCAAAACCTCTCGCCGTAAAAGCGTTACGCGCGATGCCAAACTACAAGCTAAGGACGCCGACGACTGGTGGAGAATGTACACCGAGAGGAACGAGTCCGTCATTGTTGACACCTTTCAGGGCCAGCTTAGAAACAAGATCACGTGTTCAGTGTGTGGTCACGTGTCTGTCACGCATCAAGCCTTCTCCTTCCTTTCTCTACCGCTGGCCAGTCAGCAGCTTCAGACATTCATCGTCACGTTGGTTCGTCATTCTGATGAAAACCGAAACACGGAGACGCCGCGGGCGCTGAGGTTGAGAGTTCAAGTCAACAAACCAAGCACCGCGCTTCAGATCAAGCGTAGTTTAGTGACCCTGTTTGCAGAAGACGTACAGCCTGATCTAGACACGCTGATGCTTGCTGTGGTGCGGGATGGCGCTGTTGTCGGAGTCATGCACGATGAGCGGGTTGTTAGTCTTTTTAAGGACAAGCAGAGCAAGCTGTATGCCTTCGAGCCTCTCCCACCATCCCTCCTCCTTGTGGCCCCTAATATCAACTCTAAAGATGACAACATCGCCAAAGCACGCCTGCGCCCAAACCGTAACCAGAATGCAACGGGCGCTGAAATTCTTACTCATAATGCAACGGTGTCATCCACCTTCAATACCGGAAGTAAGAAAGGGTTTGCGTCAGAGGCGATACAGTCACACGCACAGACAAGAAACAACGCGAGTAAGGGTGCTGGAGGAAGGAGGGAGGGTGATGTTACGAACAGGGCAAGTCCATCCCAAGCTAGAGGAAGGAGGATAACAACATCTTACCCAGTTGGTTATCACCTGACGCACACGTGCAGTTTCTGTCTGGAGGACAGGACCAACAGGGAGCTGTTGACGCACGACGAGTGTGGGAGAATGTTTTGTCGACAGTGTCTGGGGATTTCTGTTGAAGACAATGCCGACGGCATCAACTGTCCGGTGTGCAACAGACGATCCAGCACAGGACGGAACACACAGCGACCTCTGAGATATCACAATGTTCCTGTCCTGTTTAGACATTATGACCCAATTGAGGAGGGTGAGAGCATACTGTTTGGACATCCAGACATGGCAACACTACCCGAGAGGATCAGAGGGCAGGATCTGTACAAACACCTAGCCAGTCTGCTGCCAGTATACTTCACTGATAAGAAGAAGAAACAACAAGTCAAAGCCCTGCCTTTCACCTTACATCTCGTCAGCTACGAGGGCCAACATTGCTCACGATGCACTCGTTCCAAAGGCTGTACCGGATGTTGCATAACAGGAAATGACGTCATTGATTTCCAAACAGGTGACCACATCGCCATCCACTTGACGAACCTTACTGGACTGGACATCGATAAGATGAGCCGCTTCTCAGACCACGACTCTATGAGGACAAGAAATTTCTTCTCTTGTAGTTTACTACTCCAGGATTGCTTGAAGAGCTTTGTAGATAGGGAGGAGCTACAGGACTTGTGGCCGTGTCCTCAGTGTAACAAGGAGAGAAGTGCTACCAAATCACTGGCGGTATGTCGATATCCTGACACACTCATCATTCACCTCAAGAGGTACAGTCAGAGTAACCAGAAGATCACTGCCCCTGTAGAGTTTCCTCTGGAGGACCTCGACATGCGCGAGTACATGCACGGCTCTAACTCGCCGCGCGATAGCGGTGGTGGCGGGGACTACGTCTACGATCTGATGGGCTGTGTATGTCACGAGGGGGATTATGATGGCGGACACTACAAGGCGTACACGAGGCATGGGAACATGGCTGAGTGGTGCTTGTTCGACGATTACACTGTCTCAAAGGAGTGCCCAAGCTCTTCAAGCCACAAGACTGTTTATATATTGTTCTATAACAGACGAGCAGGTTCTCCATTAAGCACTTCTGGACTTGAAGCCGAAGTACCTGCTCAACGCAGCGAGGCAAGCAAGGAGAAAGGTTTGCCCACTGGCGATAACAAAACTACAGGAGCTGCCTTAAGAGTAAGGAAAAGTGTTCCTGGAAATGACGAGGTCAAGAGTATCCCGACTGCAGTCTCACAGCCAAAGCCTTCATGGAACGACATGATTGAGTTGATACATAATTCTACCAGTACGCCGAAGAAGAAGCACAAAGAAAAGAAAATATGTGACAAAGAGAAGGATGGAACCGAGCCCAGCGAGGAAGTGATCATCAGACCGGTCAATCAGAAAGAAGAACCAATGAAATGTGACTGTAGTCAGTGTGATTACCTTCGAGAACTCGAACAACAGGCTGGCTTTGCCTTCATAGTACCATATGTAATTTTAATGAAAGCCACCCAGTGGAAGTTTGAACGGAAGATCTCTTTATCGCAGCTAAAGCGCTCCAGAGTGTCGCTCGGTGGCGCTCCAGCAGTGGACCAAACAAAACATGGTGCTATGCCAGGGAATAACAAGACACCAACAAGGACAGGTGGCACGCCCTCCAAACAAGGTTCTGTTGTACCGAGTGGGGATTCCACACCAACTAAACGCGTGACGCCACATGAAGGGGCGTCTGGGAGACGGCCAAGGAATCCACGACACCGGATGATAGAGAAATCTCCTCCACTGGCAAGCTCTGACAGTTTAGGGAGTGACCTATTTGCTGAGCCTGACTACCCAACTAAACAATCCAAGAAAAGTCAATTTGCAAAACCTGGTGATTTACAACCAACAAGCTCGAGTTCCGAAGAATACACTTCCGAGATTCACGTCCGTAGTGAAGGGAATGTCGAAAGATTCATTTCGAAAAGCCCTTGGAAGAAAGTAGTGTCGCTCACACGGGAGTGTGCTACAGCTACGAGTTCAGAATCTGTAGAAAGTGCAGTGCAGTGTACAATAATGGACCACTACGACGCGGGGGACTACCGTAATAGTGGACCATCTTTTCGGGACTATCACGATATGGGACCTAGAGACAGGACCGGTGTTAACAGCGGTGTACATGTTACATTGCTGGAGCGTGAAACGAGTCGGAATGAGAATACAGCAGAGAGGATCTCACGTGCTAAAGACAATAGACAAAGAGGTGACATCAGTGTCGAAAGTGCAGTGACGTTGTTAACGCGAAAGCTGATGTGCGCCGTCGAAAACAAGAACATAAAGATGTTACCCTTCTCCGATAAGTACGAGCACACTCAGTACCTTTCCGAATCTCTTCTTCTTCTCAGACGCGCTTTGCAACTGATCAAAAAAGGTGCTGACCCGAGCCTACTGATAGATGGTGTCAGCGTCCTCCACATTGCTGTCGGCATGATGTCATCACTGGCTTTCCACTTCGCGCGTCTCTTCCTGGACTTCGGCGCCGACCCAAACGTGAAGTCCATTGACGGCCTGACGCCCGTCCACGTGGCGGCCATGTGGGGCAAAAAGGAATGCCTGAAGCTGCTCCTGAGCAAAGGGGGAAACCCCTACAAGGAGGACCACGATGGGCTCAATGCCATCGAGCTTGCAAAGGCCTTTGAATGCGACACAAGCGCTGATACATCTGAGTACCTCACCAAACTTGACGAGCATTATTCCTATGTTATTACGTCAGATTCCCTGAGTAACATTTCCTTATTCTCAGATATATCAACGTCGGAGCTTCAGTACATGCCATACCTCCACGGAGAAGGATGGCGAGGAAATATTCCCGAGTTTCTTATTCCCACACCAGTGGCTTCTCCAGAGTCCACTGTCCCTCAGGGCTGCGGTTCATGGGCCCAGAGAGCGAGGAAGAGAGTTAAAAAGACCAAACTCGCGAGGAGAGTGTCAGGAAACCTGCGCACAACCTCGAGCAACGTACTGAGAAGGCTTAGGAGCTTCGGGGAATATTTAAGTAGTAGCTCTAGCAGCAGTCGACAGTAA

Transcript

Acti_002542-T1

Protein

Acti_002542-T1

MDTTTEQTTTNSLSLFKELVESIEQSKTPDEYQEFRSEEELNSLKQTSSLVAKFQKEALDEKQNRVSAELQAQEKDRLASDAWRIITALKKDKYSLELQVEKLKSEKDKVVRSTLGSEDHPRKPMIAFTTRDLNAKRMESLDGKKNLDLKEALLKESLPSCEIATGNSQEVNYNGKDPVDEDTVGACNECTVGDDVINALEAKQQHNENGKMETAGEVYERKDHIENTSKDAKRFETNREQRISDGIKSWGVRHHPKGGTLKERPTNEIHEPTTEMRSNVKNHCRFDKNSAPSDLITIWAAKPRKERNPITQEMATMGEQERRSTENNTEMCSSDGDLASEKPPKTLAAKPVRAANGFVKSGKPETDQRRRVTIDGMTRNRVPGIYTRDHGQNDGTRSSLSKPGTCEGIVTNDRKELKERRATIDPPSMGRESIVPNRGFVKSDENKYLLGRNARVNEAKTAGDSRKAVRERECADGMATKPARPLLRRSLPVNNKLKKIYKESCRGKKDILNKSTKAALEDILRNHINANQQERTQSAIENKDFQCVKADVGTPRGLPGGIVGKRIQDLAKRLKIGHSTVAARNDDRMQSANLRDPCPGLCGLENLGNSCFMNAGLQCLLVVKPFHRFFLSGGHKNRGRMIFNNQRKPRVSELLGQLMEKVWSGCYLTCEPAALFKYVQSAFPQLAGFNQHDCQEFLALFLDALHQELNTAKTSRRKSVTRDAKLQAKDADDWWRMYTERNESVIVDTFQGQLRNKITCSVCGHVSVTHQAFSFLSLPLASQQLQTFIVTLVRHSDENRNTETPRALRLRVQVNKPSTALQIKRSLVTLFAEDVQPDLDTLMLAVVRDGAVVGVMHDERVVSLFKDKQSKLYAFEPLPPSLLLVAPNINSKDDNIAKARLRPNRNQNATGAEILTHNATVSSTFNTGSKKGFASEAIQSHAQTRNNASKGAGGRREGDVTNRASPSQARGRRITTSYPVGYHLTHTCSFCLEDRTNRELLTHDECGRMFCRQCLGISVEDNADGINCPVCNRRSSTGRNTQRPLRYHNVPVLFRHYDPIEEGESILFGHPDMATLPERIRGQDLYKHLASLLPVYFTDKKKKQQVKALPFTLHLVSYEGQHCSRCTRSKGCTGCCITGNDVIDFQTGDHIAIHLTNLTGLDIDKMSRFSDHDSMRTRNFFSCSLLLQDCLKSFVDREELQDLWPCPQCNKERSATKSLAVCRYPDTLIIHLKRYSQSNQKITAPVEFPLEDLDMREYMHGSNSPRDSGGGGDYVYDLMGCVCHEGDYDGGHYKAYTRHGNMAEWCLFDDYTVSKECPSSSSHKTVYILFYNRRAGSPLSTSGLEAEVPAQRSEASKEKGLPTGDNKTTGAALRVRKSVPGNDEVKSIPTAVSQPKPSWNDMIELIHNSTSTPKKKHKEKKICDKEKDGTEPSEEVIIRPVNQKEEPMKCDCSQCDYLRELEQQAGFAFIVPYVILMKATQWKFERKISLSQLKRSRVSLGGAPAVDQTKHGAMPGNNKTPTRTGGTPSKQGSVVPSGDSTPTKRVTPHEGASGRRPRNPRHRMIEKSPPLASSDSLGSDLFAEPDYPTKQSKKSQFAKPGDLQPTSSSSEEYTSEIHVRSEGNVERFISKSPWKKVVSLTRECATATSSESVESAVQCTIMDHYDAGDYRNSGPSFRDYHDMGPRDRTGVNSGVHVTLLERETSRNENTAERISRAKDNRQRGDISVESAVTLLTRKLMCAVENKNIKMLPFSDKYEHTQYLSESLLLLRRALQLIKKGADPSLLIDGVSVLHIAVGMMSSLAFHFARLFLDFGADPNVKSIDGLTPVHVAAMWGKKECLKLLLSKGGNPYKEDHDGLNAIELAKAFECDTSADTSEYLTKLDEHYSYVITSDSLSNISLFSDISTSELQYMPYLHGEGWRGNIPEFLIPTPVASPESTVPQGCGSWAQRARKRVKKTKLARRVSGNLRTTSSNVLRRLRSFGEYLSSSSSSSRQ

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050185	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-