Gene detail

Detailed information of Acti_001376-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_001376-T1	SER/THR-PROTEIN KINASE RIO2	ScLC4GM_19	38216650	38246746	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_001376-T1

AATTTCTGTGAATTGCGGCCAAATTTCTTATAAAATGGGCAAGTTGAACGTGTCAATGCTGAGGTATCTCTCTAAGGAGGATTTTAGAGTGTTAATAGCGGTTGAAATGGGAATGAAGAATCATGAGATAGTTCCTACTTCTTTAGTTGCATCCATAGCAGCCCTTAAACATGGTGGCTGCCACAAGATACTGAGAGAGCTGGTAAAACACAAACTCATTGCTTATGATCATGGCAAAGCTGAGGGATATAGGCTGACATACTCGGGATATGACTACCTTGCTCTCAAAGCCTTGGCCTGTCGTGATGTGGTGCAGTCAGTTGGGAACCAGATTGGAGTTGGCAAAGAATCGGATATCTATATTGTGGCTAATGAGGATGGACAGCAATTTGCACTTAAACTTCACAGACTTGGAAGGACATCTTTTCGCAAATTAAAATTAAAGAGGGACTACCTGAAGAACCGTCGTGGTGTATCGTGGCTGTACCTCTCACGGTTGGCTGCAATGAAGGAGTTTGCATACATGAAGGCTCTTTATGATAATGGCTATCCAGTACCAAAACCTGTTGATTATAACAGACATGCTGTCGTCATGCAGTTGGTTGATGGATACCCTCTGTGCCAGATCCATCATTTAGATGACACAGGGGCTGTCTATAGTGATCTCATGGAGCTGATTGTTCGGCTGTCCAGTTACGGGCTGATCCACTGTGACTACAATGAGTTCAACCTCCTGTTGAATGACAAAGATCAAGTTACTGTGATCGACTTTCCCCAGATGGTCTCAACATCACATCTCAATGCGCAATGGTATTTTGATCGGGATGTTCGGTGCATGCGTGACTTCTTTCTTCGCCGCTTCAACTATGAAAGTGAACTGTACCCTAAATTCTCTGATGTTGAACGATTACACAATCTGGATGTTGAAGTATCAGCAAGCGGGTTTACAAAAGACATGGACAACTCGTTTGAGGAGGCAGCGGCTAGTGAACTTGGTGAGCGGCGAAAACGAACTGAAGAGGAGAGAAGTGAGATGATGACAGATGATGACAGCCCAATGGAGGAAGAGAATGAGAGTGACGAACAAGACGACAGACAAGGAACTGCACAAGACATGGAGAGCGGAAAGGGTGTAGAGAGCGTCAATGCACAAACGAAAAGCTCCGAACCATCCAGCAGTCCAGCTACGGAATCACAGTCGCCAATTATACACAACTTGTCCGAGGAGAGCGAAGAATCTGATCTTGAGGACTTGAGTAACCTAAATAGGGCACAGCATCCGTACCGTGACGTCACAGACGATGTCATCGAAACCAATGACGCCACAACAGAGGATGTCGCTTTACCGATGACGTCATCCATGGACGCGGCTGAGGTAAGACATCGAGTCAAGAGAAGTCTGGATAAGAAACAACAAGCGATGAGAAGAAGCAAGCGAGGAGAGACTGGGGCTTTGACCAGATCGAGGAGAGAGAACAGAGAAAACGTCAAAGAGAGTGTACACGAGCTCCAAAGTGGATGGTAATCCATGTCGATGGGCCAGACGTTTTAAATTCAAAGAGAAATAACGCCCGATTCAGACGGGAACTTTTCATGCGCCGAACTCCATACCATGGGCTTTTATCGCACGGCGGCCATGTTGAGTCCCAGGAGAATAAAAACCTTTGTTTTCGTCCGGTAAACTCGTTCTGAAACCAACCAGTGCGAGGCTACCGGAGCCAAAACTATTGTTTTATCCAAGATGGCCGAACTGCGATAATAGCCCATTAAGTTCGACGTTGGAGCGACTGTTGATTCAGACATGCAGCGAACTTCATTCGTTGGACCGACTGTAACGATGAGGGTATCTGGATTCGAGCGAAAGTTCATTTCAAGGTGGCATAATTTATGCCTTGATTAAGTTCGGCGCATAAAAAGAGCGGCGTTTGGATCAACCCCGCTCCAGTGTCGGATTAAACAACACCATCTGCCAATTCAATTCAATTTAATGCCGAACCTAATTCACTCCTGCGCCTAATCCGGCTTCTACTTTTACCCACAATCCTATGCTTGCGAAAATCTTAAATCCGTTATATAACCGCGGTATCTAGAGAGTTTATAAATCTTAAAAACAAGCCAGTACAAGTGCTGTTGCCAATACACTGTCATTGAAGGGAAGAGATGATTTCTGCGTGTTTTTTTTTTTGTGCTAGGCTCGCAAAGTATTGTTGTCCTTTTCCCTACCGTGAATTGCAACATGTTGAACCAAGTGACCATAAGTAAGCGAGGGAATCTTAATACGCGCGCTTGTGTGATGACAATGTCTAATATAATCTATATTTAGTAACAGGAAGAGCTGAAAAGTGCGCGAGTGCACCAACATTATCATGGCGGCAAAATATTTTCGCGCCATGAGAATGTTGTCGCGAGCGCGCACTTTGCTTCAGCTGTTTCCGGTTACTAAAAATAGATTTTATTAGATATCTCAGTAACTCCATTACCAATGGGCTACTGACATCATCGCAGATCGCGCGCTACAAGATTCTCTCCCTTCGAACGGTGCGGTTTGCACTATGACGTCAGTTGACTACGACTACCAGAATCCTTTGCGCGGATTCTTTTGTTCTTCTATGGACCATTGTCTTGGTATTATTAGAGGAGTTAAAAATCTGAAAAAGAAAAAGAATTCGAAAAGCATTCTGGTAGTTGTAGTCAACTGACGTAATAGTGCAAACTTGAGATTGATTGAGCGCTGCACTTCTGCTGCACTTCTGCTGCACTTAATTCGGCGTAGGAGAAGTTCGCCGTATGAAACGGGTCCCAGAGCAATAGAAGGGCACTTTGTAAACATTACCCTTCGTTATTCAAACATTCCATCCAAACGTTGAATCGCCGCTTTGCTCTCCTATGCCAGTGGAATTCTGGTTTGCATCTAAATTACAGTGTGTTACGTCAGAGTACACTCTCGTATAGCCACCTCAATCTCTTCACTATCTGGCGGAAGTATCCGTGTAACCAACACGTTATCTCCCTTAGATTGACTAATATCATCAATTGTCAAAATGGCTAGAATTGATTATAATCCTCTATTTAACCTCGAGGTTAAAACCAGTCAAGGATAAAGATAAACAATTGTCAAATTCCGAACGGCGGTAGACGCGCTTAGTGTAGTGGTCATGACGTCTGTACTACCAAGCACTACACGCAAACGGTTACGAGTTCGAGCCCGAGTAGGAGCGCTCAAAAAAGATTTTTCTCTCGTTTACCTTCCTTTCTTGTTTACTTGTGAACCCCAGCTCTACGTGAGTGAGAACCCGTCATTTACCCGTGAACTCGTCCGATGGTTAGGGTTCGGTTTATGGTTTGGGTTAGGATTTGTCGTAGAATGACCAATAATCGGTATTTCAAGCGTGTTTGCCATTTACTGATTATTGGTAATTCTAGAGCGAGGATGCGTTGCCGTGTAACACAGGTACCAATCTCGTACTCAGTCTCACCCCCATTTTTTCATCGAGCATGCGCAGAAAGAAAACAATGGGGCCTGGCTACCTTCACAGGATTGTTTATTTGGCGGCCAGGTAGGTGTTAAACAATGGGTGGCCCGCCAGTTGAAACAAAAGAAATGAACATTCCACGTGATCTTGAAAGTGGCGATAAATTCCAAAACTAGTTTTTACAGGAACTAGTTGCCCATCGTATAATTTTCAAAGCCTGCTTGTTCAACCACAGGCAGCCCAAGCTCTAAATATCTAGCTAATACTAACAGCGTTTTAATGAAGCGATTTTAAGAAAAAAAGACGGGGAGCAGAGGAAATGAAAACTCTCTTTGTGTCAACCCTGGTACCACACAGACGGCAAGTAATACACTATGGAAGTAAGGTAAGGCATTTTATTCATTAATTCTTTCGTATTTCTAGCTTGTTGAAATTCCCATACAAATGCTGTTAGTATTAGCTAGATATTTAGAGCTTGGGCTGCCTGCTTGTTAAACGCAACCTCGCTCTAGAACTACCAATAATCAGTAAATGGCAAGCACGCTTGTAATAACGATTATTGTTCATTCTAAGACAAATCCGAACCAGAAACCTAACCCTAACCATCGGACGAGTTCACGGGTAAACGACGGGTTCTCACTCGCCTAGAGCTAGGGTTCACAGGTAAACAAGAACAGAAGGTAAACGAGATATTTTTTTTGACTGTCAGTCGTATTAAACCGTTAATTTACATGTGCTTGGTAGTGACGTCATGACCACTACACTGAGCGCGTCTACCGCCGTTCGGAATTTTACAATTGTTTATCTTTATCCCTTGACTGATTTTAAGAGTCATTGTTTAATTTGCGTTCTAGAATTAGCGATTATTGATAATTGAAGAGCAAAAGCCACTTACCGATTATTGGTAATTCAGAGATATGTTGGCTTGTTGCTCTTCTGGGTGGTATATTTGTTATTGGGCTAGCTGTGCCTCGCGGCCACAGGTAGTCCAATCCGGAAACAACGAAAAACCACCCAGAAGAGCCGGATGGCAGGCTACGATTTTTATTATTGTGTAATCAAATTCAGAGTGAGGGCAATCAAAATGCAGAACATGCAGGTTTTCACTGTTTTCGTCTTAAGTTCATTCGAAGATAAATGAATATATGAGTGAAATATGCAGATAAATTCACTTGAGATTATTCATGGTGACGTAGGGATTCAGTAATAAAGAGGCTGGTCTTTGTGTAAGGTGTACCCGATGATGAACCAAAACGAGAATTAAAACTCTGTCAACATATACGTGTGTGTTTATGTCACATTTGATTGACTAAGTCCAGTGTTAAATCTGGCTAATTAAAATAATACGAATTAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01163	RIO1	RIO1 family	Family	Interproscan
PF09202	Rio2_N	Rio2, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000687	Domain	RIO kinase	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR015285	Domain	RIO2 kinase winged helix domain, N-terminal	Interproscan
IPR030484	Domain	Serine/threonine-protein kinase Rio2	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45852	SER/THR-PROTEIN KINASE RIO2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0030490	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0030688	Cellular Component	preribosome, small subunit precursor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-