Gene detail

Detailed information of Acti_001179-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_001179-T1	AAA DOMAIN-CONTAINING	ScLC4GM_19	33554418	33588146	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_001179-T1

GCAATCCAAAATGGCGTCCTGTCCTTGACAACAAGAAAAGTACGAATAAGACTTCTAAGAGCTGCAGAATCTGCGGTGTTTATTTTGTAGATGAGCCAAGAGCTTAGTTACGTGCAGCTGAAGACTGCTAATGAAGCCAGACAAGCGGAGGAAGTTCGTATTGAGCAGAGGAAGAGGACTCTCTTGGTACTGATTCTACACCACTTGAGGGAAGAAGGCTATGTTGATTCAGCAAAAATACTTGAAAAAGAAGGTGGTGTAAGCCTGACCAGGTATGAAGTCTGTGATAATGTGGACCTACCCACCATTTTGCAGGAGTTTGAATCCTATTACTGTGTTAAGTTTAACAAGACACCAAAAATAATCAAGAAGATTCCTTCAAGTGCTGAATGCACAAGAAGTCAGCCTCCCAAGCTCAAAGCCTTGTCCAAAAATTCAAGAACCAGTTCAGTGTCCCTGCCAAGTATTGACAGTCAAACAGTGGATGGTACATCACAATCCTCTGGTCCACACTCCAAGAGACCCAGTAGTGATGGTAGGAAAAAGACCAAACCTAAACAGAATTCATCAGCAACTTCACCAACATCGGCCATTAGTCCACAAAACACTTCATCAGAGTTGAACTTAGCAGGGACGTCTATAACGACCAGCGGGAAGAATCCACTGCCTAGCAACCAGGCGGGGCATGGAAAGCATGTGATAGTTGATGTGAGGGCAATGTTGAATAATGCCATCAAGGGAGAATACATGTCTGCCGACAATGACCCATCTAGCCGGCTTCTGAAGCCTTTAGGGGGATTTGCAGGGCTGTCCGGTGAATGGAGAGACCTGGCGTCTGTCATCAGCAGAGATATTTACCTACACAACCCAGATGTTCGGTGGGATGACATCATAGGCTTAGATGCTGCTAAACGATTGGTTAAGGAAGCTGTCGTGTACCCTATAAAGTACCCTCAACTATTCACAGGAATTCTGTCACCATGGAAAGGTCTGTTACTGTATGGTCCGCCTGGGACAGGAAAGACTTTGCTCGCTAAAGCCGTGGCTACTGAGTGCAGTACAACGTTCTTCAACATCTCTGCTTCGTCCATCGTCAGTAAATGGCGAGGGGACTCGGAAAAACTCGTCAGAGTGCTTTTCGAACTCGCTCGATTCCACGCGCCGTCCACGATATTTCTAGACGAACTGGAGTCGCTGATGAGCCAAAGAGGAGGGGGAGGATCAGAGCACGAGGGAAGCCGACGAATGAAGACAGAACTACTGATACAGATGGACGGTCTAGCACGCTCAGATGACTTGGTCTTCCTACTGGCAGCGTCCAATTTACCCTGGGAGCTTGACCACGCGATGTTGCGTCGTTTAGAGAAACGAATTCTTGTGGACTTGCCGACGACAGAGGCGAGAAAAGCGATGTTAGAACAATATTTACCACCGGTTATTACAGCGTCTGAGGAGAACGGGCTGGAGATTAGGACTGAGATTAACTACGAGACCCTAGCACAGCTAACAGAAGGTTACTCAGGATCAGATATTAAACTCCTCTCTAAAGAAGCAGCCATGCGGAAGGTACGCAAGATATTCGACATCCTGGAGGGCCACCAGTCAGCTAGTCCCGATGGCCGGAGAACACCACTTCCCAAGCTGGAGATCGAACCTGTAGCGACCGCTGACGTTGAAGCAGCGCTGGCTCACACTAAGCCTTCGGCACGACAAATGAGGGATAAATACAGAGAATGGCAGAAAGAATACGAATCTGTCTGACTGTCAAATTTGGAATCACGGTTTCTGGGAAACCCCACCCCTCCCCCCTGTTTCACCCTAAATTTAATGGTTAATCATTGATTAATCATTGATTACAGTGACTAGCCAAGGGAGGGGTGGGTGGATTGTTTCCCAGAAACCGGGATTGATCCCAAATTTGTTAGGCTCTCAGTGTGTGCGAGGGAGATTTCTTACTAGGGAACCGTGCATGAGTTCTTGAATGAAAAACAATTCCATGATATTCATGATGCTTAACCGGAGTATTGACCGGGCGGCCGTCTGTAAATTAACTTATAAATAGTTAATATAGGTATTGTCATTGATATATTTTATTTTTTTATTTTTTTCAGCGATGTTCGCGGTGTAAATATTCAATTTATTTAATAGAATGAAATCTTCAATCCTGAACTGCGTTGCTTTTGTCCAACTTAATTCCTTGTCCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF08513	LisH	LisH	Domain	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR006594	Conserved_site	LIS1 homology motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027497	Family	Katanin p60 ATPase-containing subunit A-like 2	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR050304	Family	Microtubule-severing AAA ATPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140603	Molecular Function	obsolete ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-