Gene detail

Detailed information of Acti_001172-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_001172-T1	HEDGEHOG	ScLC4GM_19	33376281	33388698	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_001172-T1

ATGAAGACCTCGTTTGGAGTGGCTGTTTTCGCTGCTGCGTTGACTCTAGTCTATACAAGGCGCCTTCCTCCATTCAGTGCCCTCAAACGCGTCTACCCTGGGAGACAGAAGGATGGTGGACTGTACACAGACGAGCAAATACTGACTTCAGTTAAAGCGCAGAACTTGACTGGTAAACTGAACAACACCTGCCCACTTCGCATTAGCATCATGCTGAACCTGATAAACTTCCATGCTATCATAAAAGTTCCACCAGAACTCGACACATCTCAGTACCTCACACAGACGTTTGAGGTGAAGGGAACTGAAAACGTATCAGTTAACATGTACTTTATGCTGGACAACAGTGGATTGACCAGCCACCTTAACCAGCAGTACGGGCTGCCTCTCGTGAGTAACAAGGTGGACGAATTCATTGGCCGCACGGGGATAATGTTAATGAATATATCAAGCGGTGTTGATACCTGTACAGCCTTACTATGGGACGGATACGGATTCCACCAGGCTAGGAGTTTCATACGGCATACGAACCTCTCTCATATCTTCTTTTGGCAGACACCCAATGAACCTTGCAGTATCAAGGTGTCGGGGGGAGAAAAAAGTGGGCTGTGTTTCACAGGAGACTCTACAGTGGAGCTCGACACGGGAGAGAAAATAGCCATGGAGGACCTGAAGATCGGCCAGCACGTGAAAACAGCCAATGATAATGGAGATATCTTCTACACACAGGTTGTGACGTTTCTAGACCACCAACCGAGATACAAGGGTCGATACTACATGATATTGACCGAGTCAGGCAGGCAGATAACCATGACCGAGTCCCATCTCATCTTCAAAAAGGAATTTCAAATCTCCAAAGCTGGTTTACACAAGAAAAGAGCCGTCTACGCCTCGAGAATCAGACCGGGAGACTTCGTCTATACCCAGGGCCCTGGAAATGCGGTTCTCCTCGCGGACAGGGTTGTTGGGGTAGCCTTGGGAGAGGGTAAAGGGGCATATGCACCCGTGACCAGCGAGGGCACTGTTTTGATTAATGATGTCCTTGTGTCGTGTTTTGCAGATCTTGCTGATCATGATTTGGCTAATTCCTTTATGGCGCCACTTAGGGCACTTTATAGCTTGGCACCAAATGTTTTAGGTGCTGGAGGAAGTTACATTCATGGTTACCTTAAAATGTTATTCCGTCCCGCCGGCGTCAAAATCCTCGGGCGAGATAAGTTCTACTCGGGCCCGTTCGAGGAAGGTCCCAGAAAGCCATGAATATCTTATAGGTTTTTTTTCGCTTCAGTAATTAATTTGCCAGTATTTAGATGAACACATTACATGCCACTGCTGTCATTTAAGCCGCGAATCCATATCAGAAGTCCCCCACCCCTCCCCCCGTGGCTATCTACTTGAACCAAACAAAGGACAATATAAATCAAACTTGTCCGATTAAACAACCCAGGATTAAAGGTAATGATTGGTTTGAACTTGTTGAATATCGATTTTGGGTTTTAAATGTTTTGTTTGATGAGGACCGATATATAATCGGGCTTCGAACTGAAGCCAGACTGTTAGTGAGAAAATATATCGTTTTTATCTGTCTTTCAGTAATACAAGAAATAGATACCAACAGCAGAGTGATGGTTTTTTCCGATTCGTACCATCACCCTATCACAAGTATTATAGCGCGTCGCCTGAAAATGTGCCGGTGCATTGCCCTTAGAGTCCATGGCCATAGCTGGCAAGAGACGAGATGAGGCCCTCCGGCTCGTCTAGCCAGATTTTTCCCAGTAGATTGTAAATGTGAATAAATAATAAAATCTCAAGCAGAACGCAGAGCTTCAGGGGATTCCCCCTCACCTGGACCCCCTCCGGGGCGCAGAACCCCCCACTCGTAAGATATTTCATCAACACTCGAAGATAAAATCCGTATCTCCACGCGGCCATGTAATAACCTCTATATATATACGGTTCTCGTTTACATAAACTGATTTTCTCCGCCGAAATAGGTCGTATCGCCAAAATAATTGAATTATACTCTATTCATCGACGTTATTTAAAGCAGTTCAATAAACGCGCAGCGGTATTTTATCAGATCTACAAAAACTCTGCCTGCGCCCTCGATCGTGTTTGTAAATCTGATAAAACACTGATGCTCGTTTATTAAACAGTACATAGCATTAACGCTACATGGTCAGAATTGCTTACAACAATAAAGATTAACAACATTATGACGAAAAACTGATGCAGTCGTGAAACTTGCTTCACATTTTCCTTAAAAGACCGCAATCAAAGATAGATTTGTTCATATGATTGGCACTTGAATTTAAGGGGTTTATAAGTGCCATGCATATGAATCTGAGAGAGGATTTGTTCAATTTCTGTAGAAGGGCTGCCTTAAGATGTTGATAAACTTTACAGTTCATGAGAAAGTGTACTTCATATTCAACTTCCTCTGGACAGAAAGTGCAATATCTTGTCTGCCTGAATAATGAAATAGCAGTTTATATATCGAACTCTTCCAATATCCAGTTCATGGTCACTTATCCTTAGTTTTGTTATGGCTTGCTTATGTTTTGTGTTCTTTACCGTTAACAGTTATTTTTTCACACCCGTAATCTGTGGGACCTAAGTTTGTTTTTATGTCTCTATCAATTCCAAACCTGCTCATCCCCCATCTCCCTCGCGGGCATAGGGGCATTTGACAACTTTTTAGCAGGATTTACCAACCCATACTTTTAGTTTTTTTTAGAAATCAATGCTTTTCAGTAGGATTCATGGAGACTGATAATATTATTTCTAACTTCACTGTCCAAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01079	Hint	Hint module	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001657	Family	Hedgehog protein	Interproscan
IPR001767	Domain	Hedgehog protein, Hint domain	Interproscan
IPR003587	Domain	Hint domain N-terminal	Interproscan
IPR006141	PTM	Intein N-terminal splicing region	Interproscan
IPR036844	Homologous_superfamily	Hint domain superfamily	Interproscan
IPR050387	Family	Hedgehog Signaling	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11889	HEDGEHOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0005113	Molecular Function	patched binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0007224	Biological Process	smoothened signaling pathway	Interproscan
GO:0007267	Biological Process	cell-cell signaling	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0016539	Biological Process	intein-mediated protein splicing	Interproscan
GO:0016540	Biological Process	protein autoprocessing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-