Gene ID | Annotation | Scaffold | Start | End | Strand |
---|---|---|---|---|---|
Acti_001057-T1 | ATP-DEPENDENT RNA HELICASE | ScLC4GM_19 | 29997832 | 30066272 | + |
CDS | |||||
Acti_001057-T1 | |||||
Transcript |
Acti_001057-T1 |
Protein |
Acti_001057-T1 |
Gene family | Subfamily |
---|---|
- | - |
Pfam accession | Pfam name | Description | Type | Source |
---|---|---|---|---|
PF00270 | DEAD | DEAD/DEAH box helicase | Domain | Interproscan |
PF00271 | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
PF01424 | R3H | R3H domain | Domain | Interproscan |
PF04146 | YTH | YT521-B-like domain | Domain | Interproscan |
PF04408 | HA2_N | Helicase associated domain (HA2), winged-helix | Domain | Interproscan |
PF07717 | OB_NTP_bind | Oligonucleotide/oligosaccharide-binding (OB)-fold | Domain | Interproscan |
PF12796 | Ank_2 | Ankyrin repeats (3 copies) | Repeat | Interproscan |
PF21010 | HA2_C | Helicase associated domain (HA2), ratchet-like | Domain | Interproscan |
InterPro term | Type | Description | Source |
---|---|---|---|
IPR001374 | Domain | R3H domain | Interproscan |
IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
IPR002110 | Repeat | Ankyrin repeat | Interproscan |
IPR007275 | Domain | YTH domain | Interproscan |
IPR007502 | Domain | Helicase-associated domain | Interproscan |
IPR011545 | Domain | DEAD/DEAH box helicase domain | Interproscan |
IPR011709 | Domain | DEAD-box helicase, OB fold | Interproscan |
IPR014001 | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
IPR034083 | Domain | DExH-box ATP-dependent RNA helicase, R3H domain | Interproscan |
IPR036770 | Homologous_superfamily | Ankyrin repeat-containing domain superfamily | Interproscan |
IPR036867 | Homologous_superfamily | R3H domain superfamily | Interproscan |
IPR048333 | Domain | Helicase associated domain (HA2), winged-helix domain | Interproscan |
PANTHER term | Description | Source |
---|---|---|
PTHR18934 | ATP-DEPENDENT RNA HELICASE | Interproscan |
GO terms | Category | Description | Source |
---|---|---|---|
GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
GO:0003723 | Molecular Function | RNA binding | Interproscan |
GO:0004386 | Molecular Function | helicase activity | Interproscan |
GO:0005515 | Molecular Function | protein binding | Interproscan |
GO:0005524 | Molecular Function | ATP binding | Interproscan |
GO:0005622 | Cellular Component | intracellular anatomical structure | Interproscan |
KO | Enzyme | Enzyme ID | pathway | mapID | Source |
---|---|---|---|---|---|
- | - | - | - | - | - |