Gene detail

Detailed information of Acti_001025-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_001025-T1	RNA LARIAT DEBRANCHING ENZYME	ScLC4GM_19	28612289	28615401	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_001025-T1

GATGGCGACCATGTGAGTTGTTGTGCATTTTTGTTCTCGAAGTTCTATCCTTGTTTTAAACGTTTATGCACTAGAAGTAACGGTATTTAAACATGAAGATTGTCGTTGAGGGTTGTGCACATGGTGAACTGGACAAAATATACGAGTCCATCCAATATTTGGAAGAGAGAGAGGGCTTCAAAGTTGATCTTCTCTTGTGCTGTGGCGATTTTCAAGCCGTCAGGAATAAAACTGATTTACTATGCATGGCGGTTCCTCCAAAGTACCGCCAGATGCAAACTTTCTACAAGTACTACTCTGGGGAGAAAAAGGCACCTATCTTGACCATCTTTATTGGAGGAAACCATGAAGCCTCAAATCATTTATGGGAGCTGCCCCATGGGGGGTGGGTTGCACCAAATATCTATTACCTTGGCTACAGTGGGGTAGTGCAGTATGGAGGATTTCGTATAGCTGGGCTTTCAGGAATTTACAAATCCCATGATTACCCTAAAGGACACTTTGAATGCCCTCCTTATGACAATAGTTCAATGCGAAGTGCTTACCATATAAGGAATTTTGATGTGTTCAAACTGAAGCTATTGATGCAGCCTTTAGATATCATGATGTCACATGACTGGCCTCAGGGGGTGTACCACCATGGTAATGTTGACAAGTTATACAAGTTTAAAAGCTTTCTTAAGCCTGAGATTGAATCCAACACACTTGGAAGCCCTCCTGCAGGGGAATTGTTATATGCCCTACAGCCGACCTATTGGTTCTCTGCCCATTTGCATGTGAAATTCCCAGCACTCATCCCACATGGGTCAGCAGACCAGGAAAGTACAAAGTACACCAAGTTCCTTGCCCTTGATAAGTGTCTCCCACGTCGTGACTTCCTTCAAGTTATCGATGTTGGTGATCCAAAGGGGCCCTTAGAACTTTGCTATGATCCTGAGTGGCTGGCCGTTACTAAACTAACAGATCTACTGACTAACATTACTCCTAGCTACACTGTACTACCAATGTCAAAAGAAGAAATTGCAAAGTACAAACCAAATGCTATTTTATCAAGTGAGGTTGCAAAACTCTTTAGCAATGACTTGAAAGTTCCTTGTAACTTCACAAAGACTGTAGAACCCTTTGATCCTGCACAACCAAAGAAGAAATCTAGACCAGTTGGACTCAGATTGAATCCTCAAACTGCACAGTTCTGTCAGGCACTGGGCATTAGTAATTCTTTCTTTCCTGGAGGATCACAACAGGAGAAAGCACCTGTTAATCCAGATGAGATTGATCTTAGTGATGAAGATGATGGTGTTGATAATGATGGTAGGGTGGAGTCATATCCCGCAAATCCAGATGAAATCAACCTTGGTGAGGATGAGGATGAAGAAGACACTAACAAGCCATGTGCACAGGATCACAATATACTATGGGATGAAGATAGTTTATCTAAACCTGAGGGGATGGCCTGTCTTTCCAATGTCTTGGATGATGAAAGTCTGAAGAGGGGTGATAATGATGACAATGAAAGTGTTGTACCAAACAAGAAGGTTATAAAGTTATGCAGAAGAAACCAAGCACTGTACACTCCCAATGATGATGAGCAGGATATTATAAATGGTTAAACTAATCAGTGACCATTAGCTGTTAATTAACGATTCACTCAGCTTTAATAAGTCTTCCAGTTAAACAAGGACCCACACTATAAAATTGCCTCAACCAGGTCGAAGACACCTTCAGTTGTCAATCAGCCTTTGCCAAATGAATGTCTCTGTTCAAAGCTCTGCAGGCAACATGTGATGCTCTGCTTGAGTGATCTCCAATATTATTTTGGTATTGCACAAAATTCAAATTGAAAACTTGGATGTCTAAAAATACACTAAAGAGTGTAAACGGTTCTAAAAACACTATTGGCAGGCATAACTGAGCAACTAGCTTCCAGCTGTTTACTTTTTCTCGGCTCATTTTAAATTTAGTATTCTAACAGGAGAAGACTGGTTACTTGCTTTCTTGCTTGACTGTCAGTCTGAATTTGAAATTCAAATTTCAAATCCCAAAGGGCATGCAAGAAAGGTGGAGAGTATTTTCCCTTTTATAGCATGGGTCCTTGTTTAAGTAGTAATTTAGAATCCTTTCAGGTTCAAAAAGTGCAAAAATAATATTTTACTTTTAATAATACTGTTTGTAATAATACTAAACACAAAAATTAAGCTTTAGGAACCAAGCCATGTACATGTATGGCTTATAGCCAGCTCTGCAAACATATTTTTTCACTCATAAATTAGAAGAAAAATTAAAGTTTGCTTACATGTACATGTATATCCGAGTGCTTAATTAGTTTCCAATATGCATGCATGACATCAGCACTTTTGTTTTATTTTTATGTCCAATCAAAGCCATTGTTAGAATTTTTAAATTAGCGCACCATGCAACCGTCATGATGAACTCTCAACTGGTTGGGGCCATGGTGCAAATATATCAAAACTATCAAGTTACCAAATCTGCTTTTTAGATTCTCTAAAGCCAAAATTTAACTCCATCCGTTTCTGTCATATAGCTTTTGATTGAATTTTATGGAGCTTTTGGAGGCTAAACAAGACATATGAAATGAAAAACAATGAAACGTGCAATGTACAAATTAGTTTCATCTCGAGCATGGGAACACTCTCCTATCATTGGTCAATGGCAAATGTATTGTCTGAATTCCTTTTAATTATGTATGGCTATATGTATTAATATGCTAGCAAATTAGGATATAACAGTATGAATGATTTTTAGAGTTGCTCCAACGTCTGTGTTGATGATTTAGTTTAACTAAATTTAGTACTAATTTAGTTGACGTCACCTATTTTGAAATTTCATGTGCCAATGGTCCGGCTCAGATCGGCGGGAGACGTTGACTTGTGGAATTGTCTAGACGCGTACTTTTGTATGGTTTCAGCTGTTCTATTTTCAACTAAAGTTGACATTCAACCCCCCTGATTTCTCTGTGGTGGTTGGTCTTGGGGTTACACAATTTTGGCAGTATCAACTAAATAATAAACTGATTTAGTTAAATTTATCTAAATCCTCAACACCGACGTTGGAGCGACTCTACCTTGACAAAAATAAAATACTGATAATCAATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF05011	DBR1	Lariat debranching enzyme, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004843	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR007708	Domain	Lariat debranching enzyme, C-terminal	Interproscan
IPR029052	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR041816	Domain	Lariat debranching enzyme, N-terminal metallophosphatase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12849	RNA LARIAT DEBRANCHING ENZYME	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0008419	Molecular Function	RNA lariat debranching enzyme activity	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-