Gene detail

Detailed information of Acti_000922-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_000922-T1	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	ScLC4GM_19	25987305	25990145	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_000922-T1

CCAAAATGGCGAACAAGCGTGTAGCTTACGTTGGCGGCTTGGCTGAAGAAGTGGACGAAAAAGTCCTTCATGCAGCCTTCATTCCCTTTGGAGACATCACAGACGTACAGATACCTATGGACTACACCACTTCTAAACACAGAGGCTTTGGATTTGTCGAATTCGAGCTCGCAGAAGATGCAGCAGCCGCCATCGATAACATGAATGAATCCGAACTTTTTGGACGAACGATTAGAGTGAACCTCGCCAAACCTATGAAAATCAAAGAAGGCTACAGTAGAGCTGTCTGGAGTGAAGATAGTTGGCTACAGAAACACGCCGGGAAAACATTGGAAGGAGATAAAGTTGCGGAAGAAGGCGAAGAAACCAGTGAAGACATGCAGACTGAGCAGGTTTTGAGAAAAAAGGGCAATCCACATGTCTACTTTGATATAAGCATTGGAGGAGAAAAAGTCGGGAAAGTCGTAATGGAGCTGCGATCTGATGTTGTTCCAATGACTGCAGAGAATTTTCGCTGTCTCTGTACCCACGAGAAAGGATTTGGCTTCAGAGGAAGTGGCTTTCATAGGATTATACCCCAGTTTATGTGTCAAGGGGGTGATTTCACTAAGCATAATGGCACTGGTGGGAAATCCATATATGGTGCAAAATTCGAAGATGAGAATTTTGTCCTGAAGCACACAGGTGCTGGAGTAATGTCAATGGCAAACTCAGGGCCAAACACTAATGGGTCACAGTTTTTTCTCACAACAGAGAAGACAGACTGGCTTGATGGTAAACATGTTGTGTTTGGTATTGTGATAGATGGTATGGATATTGTTAGAAAGATGGAAGCTGTAGGATTACAATCTGGGAAAACCAGCAAGAAAGTTGTTATTGAAGATTGTGGAGAGGTTTAGTCATTGTACTCATTGTATGGTGTGATTCAAAGAACAAAAGAGGAGTATAAGAAACTATGAGATGTACATGTGTACTGTAGACTGAATCCAAATATGGGAATGTTAGTTTGCTTACCCAAAACTGCCCCTATTGTCTAAAATATATCTGCAAAGAGTAGTTTGGACATAGCAACAAAGGTGATGTGGAATAGGTAGTCTCTGAATTTCTAACAAGACCTGAAACAGCCATGGGGGCTGATCAAAGTCAGGTCCAGGCTAATCCGGGGGGGAGGGGGGTACTCAGAAGATTTTTGGGTAGGGGTGTGCCACGAGGCCTCAAATCCCTGACCCTATCCCAGACCTAAAAATACCATTTACCATATTACCATATCCCAGACTTGAAGCAAAAAATCTGTACCCTATCCCAGACCCAAACCATAGATTCATACTCAATTACACTATAAAAGCCGTTGTTTTGTTTTAATATGGTATTTTAAGCTGTAGTGTGGTTGATAGAGCGCTAAGCATGACATTGACGACTAGTATATCAAAATCCATTCCCTTTCCAAGACCAAAACCATAAAAAGGATACCCTATCCCAGACCTCAGCAGCTCAAAACCTGTATAGCCATATAAGGGAGTACCCCTTCCCCCTTTGGGCATAAAAGCATAGGTAATATATCAAAAATGAGTTAGCGTTTGACCATGGTATCAAAACACTGAGAAAGCAAATGAATCTCAAGGGGCACATGACTTGTATGATGTTATTGAAATTTGATATCTTAATAAACGAAAATGGCAGACATTACTGACTGAATTCGGTCGTTTTGTTTTCCAGTTCCACCTTTAAATTGATGATAACTGGCTAGGCTTAGCTAGATTATGCTGGCATAATTTCAAGCATAATACTATGGTGTGTGAATCGAGAATTGTTCCGGCATAATAGTGCTACATGTATTTTGCATATAGTTTGGTAACTTTTGCATCTAATCAATAAAGGAAATAGACAAGCGTACCAAGATTCTTTTAAAATAATTTAATTTGTGCGTCAATACTGCATTGGAGTATGAATATTACATTTTAAAACGATACCCGAGTACAAAGCACTTATGGTCTCAAAATGATGTTTGCACTGTCCCGAAAACTGAAATCGCAATAAAAACGATTTATTTTGCAATGTAGGCATATATGATTTTTTTGAAAGCGTATTGTGCAATAGTTTTGATGCCGTCAGTTAGTGGTCGGGATCACATATAATCCTCTCCGCTCAGTCATTTTCTTATATAATTATCAAATTCTTGTTTTTTACACTTTTATTCTTCAAATTGCTTTGATGGAGTAGTTCTTTTTCCAGATTTTCCTACACACTTGCATTGCAAAGGAAATCATTTTTTTGCGACTGCAGTTTTCAGTACAGTCCAAATATCATTTTGAGACCATAAGTGTTTTCTACTCGGGTATCCCTTTAAACGTTGTTTTCAATGAATTCATCTATTAGTTTATTTTCTTTGTGGATTGGTGGACGAGGGGGAATGCAGGGTGAGTGAACCATGTCTTTCTCCGAGCATAATACCTGCAATCAAGCATAATTTAGAGCATTATAGTCCGTTTTCACGGGTGACGCCGAAAAGCATTATTCCCTATTTTCCTAGCATAATCTAGCTCAGCCGTATATGTTCGATTAGTGGCAGTTAATTCCTGGTTTGCGCTATTTGTCAGTTGAATACAGCCCAGGAATACAGCTACCAGAATCATTTTCGGATTCTTTTTCTTATTCAGATTTTTTAACTCCTGAGAATATAATACGAAGACAATGGACCAAATTAGAAGAACAAAAGAATCGGCGCAAAGGATTCTGGTAGTTGTATTCAAGTGACGTAATAGTGCAAACTGCTTATTGGCAGTCCCCTCATTGCTTGATCGAAATGATACGCAATATTTTCCTTTAAGACTACGTGATACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00160	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR002130	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR016304	Family	Peptidyl-prolyl cis-trans isomerase E	Interproscan
IPR020892	Conserved_site	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	Interproscan
IPR029000	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan
IPR034168	Domain	Peptidyl-prolyl cis-trans isomerase E, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11071	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000413	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-