Gene detail

Detailed information of Acti_000860-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_000860-T1	3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE	ScLC4GM_19	24430021	24473178	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_000860-T1

ATGTGTCATGGAAAAAGCGGCATTGCTACTTTTTTCTACACTCACGGATTCCTCTGCGCCTCTCATCCGGTCGAGGTATTAGTGCTGTGTGTTACTGGAACAGTTTGTCTCCTAACGCTGAGCATTTACGACGCTACACACGCTTTGGATGGAACACTAGTGCCAACGAATGGAAAAGTTCCATTGCCAACTGGTATTCATGTACATGTTGGTGCAACAAGCTATTTTCTTGCCCTTCTCTGCATTTATCTTCAGTGTAAAAAGTTACTGAATACTGGTTCAAAGAATTTAGTAGGAATTGTCTGTTTCTTTTCAGCATTTTCCTGTATTGTGTATACCTCTATAGTTGGTAATATATTTGGAGGAGAATTAGAAGTGTTAAGAGAGGCACTGCCATTCTTCTTTCTCTTAAATGACTTCATCACTGTTGGTGCAATGGCTAAGTTTGCTCTCTTGTCTAAATCATATGAAGAAGCACCCTCAAAAATAGCACAGGCCGTTGCCACACTTTGTCCATCTGTAACCCTCAATACACTAGTGGGAGCCCTGGTTATAGGAGTAGGAACCCTTTCAGGTGTGGAGGAACTGGAGACTGCAAGCTACTTTGGATGCTTGGCCCTACTCACCCACTATCTCATATTCATGACATTCCTACCAGCATGTCTGTCATTATTTTTAGAGTTGTGTGATAGGGGCAAGAATAAGCCAACATGGCAGATGAACATCTGTGAAGATCTGTCAACAGAGGAACATGAACAAACACCCAACCCCCTACTACAACATGTTAAGCTTATAATGTCTGCAGGTTTGGTGTTTGTCCACATACACAGTCGTTTTCTGGTCAGACCTGAAGGAAACGGTGCTAGCAGTATACAAAATCAATCAGCTAGAGCCAGGGAGGACTGGTTATCAAGGTTGAACCTTCTTATGGACAAGCCTGCGAACAGCCTCGTGGGAGCTAGAGAAGACAGGGGAAGGTTTCTAGCTGTCAATTCGGAGCAGGTTGTGGCCATAGTGCTTGCTTTATTGGTTGCTGCAAAGTATCTTTACCTCGAAAAGGATGATTCAAGACCATTACTAGAGCCACAAGAAATCCATGAAAAAGCAAAGCCAGCATTACCTCAGCCTACAGTAATCTGTAGTACTGATAAGAATACTTTAATCAAAAAAGCAGTCATCAAAAGAACCAGAAGGTCCACCTTCTCTATTGGTGACAATGCAACCCTAAGTTATAAAGAACTAAATGAAGAAATGGAATCTATACATGAATTTGAGCAGCCACAGGAGCTATGTACAGAAGGGAATGAATTATTTAATAAATCAACTGTACCAGTTCTAAAAGCAGAGGATAATGAAAGAGACATGACAAGAAAGCAGCCATTAAAGAGGACATTCTCATTCCCACACCTAAATTCAAAACCGAATAGTTCATGTACACTTGCAAGTATACAGGCTCCAAAGAAGAATGTGGTCGTACCAAACAGTTGCAAACTAGAATTACCAGAATTTTTTCCTGAGGAAAGTGATTCAATATATAGGAATTCAAAACTAAAGGAAAGAGCCCCTGTTATTAGACTGTCTGGTCCATCATGTAATAGTGCACCTGCAAACACGGCATCCTCTAACTTAAATGTGATGAGTCTGTTTGAAAGGAAGACTTGCAGAGTTGCCAGGAATGTGGAGGAGTGTAAAAGAATAATGAAGGAACCTGATGGTATATTTAGCTTGACAGATGAAGAAATATGCTTGTTAGTTGAGAGTAAAGTTATTCCTGGTTACCAACTTGAATCAGCTCTGAGAAACCTAAAGAGAGCAGTGCATATCAGACGGAAAGTCACAGCGAGGAGAATAAACAGAAGTACAGAGATGCTCTCAGAACTGCCATATGATCACTACGACTACACTAGGGTATCAGGAGCTTGCTGTGAAAATGTAGTTGGTTATATGCCTGTGCCAGTGGGTGTAGCTGGACCACTACTACTAGACGGCCAGCAGTTTCAGGTTCCCATGGCAACAACAGAAGGCTGTCTGGTTGCTAGTACAAACAGAGGCTGCAGTGCACTTATGAGGAGTGGTGGTGTAAGGAGCTCTATTATCAGTGATGGCATGACAAGAGGACCGGTGATGAGATTTCCATCAGCACTGCAAGCATGTGATATCAAGCTATGGCTTGAGGAAGAACAAAATTTCAAACAAGTCAAAACAGTCTTTGATAGCACTAGCAGATTTGCCAGGTTGAAGTCCATCAAATGTGCTGTGGCGGGAAGATTATTGTTTGCTAGATTTGTAGCAACCACTGGAGATGCAATGGGGATGAACATGTTATCTAAGGGAACAGAAAAAGCTTTACACCACATTCAAGAGGAGTTCCCATGCATGGAAATAATAAGTTTAAGTGGAAATTTCTGTACGGATAAGAAGGCCACAGCACTGAATTGGATAGAGGGTCGAGGGAAGTCAGTAGTATGCGAGGCCATTGTGCCACGACACATTGTCAGCAAAGTTCTAAAGACCACTGTCACGGCCTTAACAGAACTCAACAACAGCAAGAATTTAGTAGGGTCAGCCATGGCTGGTGCTATTGGGGGTTTCAACGCACAGGCTGCTAACATAGTCACGGCACTGTTCATCGCTACAGGACAGGACCCTGCACAAAGTGTGTCTAGTAGCAACTGTATCACGCTTTTAGAACCGTGCGGTCCAACTCATGAAGATCTGTACATCAGTTGTACCATGCCTTCTCTGGAGGTTGGGACGGTAGGCGGGGGTACAGTTCTTGGCCCACAGGGCGCCTGTCTAGAGATGCTTGGAGTTCGAGGTGCAAGTGAAACAAAGCCAGGTCAGAACGCCGCACAGCTAGCGCGTATAGTGTGTGGTACTGTTCTGGCGGGAGAACTGTCTCTACTATCAGCACTTGCTGCTGGACAACTAGTGAAAAGCCATTTAAAACACAACAGATCCACCATCAACCTACTCAGCAGTGAAGAGGCAGCTAAGAACTGTGCTGTGTTATAG

Transcript

Acti_000860-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00368	HMG-CoA_red	Hydroxymethylglutaryl-coenzyme A reductase	Family	Interproscan
PF12349	Sterol-sensing	Sterol-sensing domain of SREBP cleavage-activation	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000731	Domain	Sterol-sensing domain	Interproscan
IPR002202	Family	Hydroxymethylglutaryl-CoA reductase, class I/II	Interproscan
IPR004554	Family	Hydroxymethylglutaryl-CoA reductase, eukaryotic/archaeal type	Interproscan
IPR009023	Homologous_superfamily	Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily	Interproscan
IPR009029	Homologous_superfamily	Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamily	Interproscan
IPR023074	Homologous_superfamily	Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain superfamily	Interproscan
IPR023076	Conserved_site	Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site	Interproscan
IPR023282	Homologous_superfamily	Hydroxymethylglutaryl-CoA reductase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10572	3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004420	Molecular Function	hydroxymethylglutaryl-CoA reductase (NADPH) activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005778	Cellular Component	peroxisomal membrane	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0008299	Biological Process	isoprenoid biosynthetic process	Interproscan
GO:0015936	Biological Process	coenzyme A metabolic process	Interproscan
GO:0016126	Biological Process	sterol biosynthetic process	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-