Gene detail

Detailed information of Acti_000498-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_000498-T1	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	ScLC4GM_19	12652819	12663231	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_000498-T1

CATAAATCGAGTACATGAGATATTCTACTTGTATTCAAATTCCGAGTTATCCAGGTTGGCAAGGATGTCAGTGATCACTAAGGCAAGTACGTGTGGATAAAATGGAATAAGTTAATTACTCTCGCTATCAAATGAGGCATGTTAATTAAATGGTTATGGTTACCCTTCTGTTACTGTGAAGAAGGAGACTTATTCAAATTGAAAACGGATGTTGGTTTGATGATGGATAACAAAATCACTCTCTCCAACGGTTTAGAAAACATTAGGAGCGCTCGATTTGTAAAGGTATTTCTCTCGCCAAGAAATGATTGTTTGATAAATTGTTGGGACTAACACTGTCTTATTCCTGATTCTTCGATTCACTGACATTGTTCGTTATGGCTACGACCACAACTGAGAAGGAATGTGCCTCCTTCGAGAATACCAAGTCTCACTCGTTATAATCAGTATGAATGAGAGATATGCAACGTGTAAACTTGTTTATACCTTATTTTTGGTTATTAGAAGGAACTTTGTTGAAAGAAATACAGCCTGATGAAAACTGATTAAATTAGTTCGTAAAGAATGCAGCCAATCATAAAGCAGCAACGTATATTAATCCCGAGTCATGGCTGATTGGATAAATCCAAGCATGGGTACGTCATACTGCCTAGCCAAAAGATCAAAAACCACAAACTAGTTGAGGCTTCAGGGAATACACATAACATAGATCATTTTTGGCCATTGTGTCGATAACCTAGTCATGTTCAAAGCTGGAATTGTTAAACTTTGAAGTGTGCTCTCCTTGGTACGATGCGCTCACGGCATTTGAGCTGTCGCGAATTTGAATGCCGAGATCTGAGCCCCAGTATAGGACTCTTCTGGAACTTGAACATCATGTCACGCGATTTTTGCCTCGGAGCTAAGTTCCCATTTAAGACGTACTCTTGAGTTACAAAGGACAAGGAAGAGTAAACCAGTTAGGTGGAATCTTCATCAACGGTAGACCACTTCCTCTGATCCTACGCCGGAGGATAATTGAACTAGCACAGCTTAGTGTTCGTCCTTGCGATATCAGCAGGCAACTACGAGTCTCCCATGGCTGTGTCAGCAAGATCCTTTGCAGGTACCAAGAGACCGGTTCCATCGCTCCAGGAGCAATTATGGGAAGCAGCACTCCTCGAGATGTCACTCCTGGTATCGAGAAGAAGATCGACGAATACCGCAAAGACAATGCAAGCATGTTCTCGTGGGAGGTGAGAGACAGACTTCTTAGAGAGAACATCTGTACAAGGGCAACAGTTCCTTCTCTTGGTGCCATCAGCCAGATTCTAAAGAGCAAGATTTCCAGGAACGTACTGAGCGAAGAAGAGGAGTTCATTGATGTTGAGAAGCGCAATGAAGACTCTCTGGACTGCACTTCACCGTATTCAAGCTGCTATGAAGAAGACGAGTATGATGGAGAGAGGAGCGAGATTCATGTTTACGAGTCTTTAAGCCCAAGCTTTCAAAGTTCCTACTCGATCGCCAGTATCTTGAAGAGCTCACAGAACGAGAAGGAAGAACCTATCAGCCCTCTTGGCTTCCAAAAGCAGATCAAAGTTGAAGTAGAAGTGGAATCTCCTCCACCCAGCACCAGCCCCACTCAGTACGACTTCCAATCATCACTGGACGCAGATTTCCTGTTGAGTCGCAAGCAACGACGCAGCCGCACTAAGTTCACATCTGATCAAGTGGATGAGTTGGAAAGAGCTTTTCAAAAGACGCAGTACCCGGATGTTTACACCAGAGAAGAATTGGCTCATCGACTGAATTTGACTGAGGCCAGAGTTCAGGTCTGGTTCTCTAACCGACGAGCAAGACTTCGAAAGCAAGAAATGAATGGAAACGAGGCTCAACCCCCAAAAAGGAAACCTTGCTTTGGCGTATGTTTGTGCCATCAGCCAACAGTTCGATACGTTCAGCTCATGCCACTTGACGATAGAGTGTACTCGCTACCAGTATACTAACTATATGCCACTTGACGATAGAGTGTACTCACTACCAGTATACTAACTCTATTGACTTGGAATATCAAAGTGGATTGAATCAATTTCATTGCCTTCCCAGACTTTCGTAAATAATTCCTAAAACAGAAACTCGTAGCTGTATTCATTTCCATTGGAATAGATCTTAAAGAAAGAAACAACAAACATATTTTGGTGTAAATGGCAACGATATAAGTCTTTATCCCATGTCACAGAAAGACAGCCAGTCAGAGAGCTCGTTATTCCATGCTTTCTTCCCAACAGTCAACGCACCTTAGTTATCGAACCTGAGGGTGTGTTTGATTAACCTTATTCCCAAATAAGAATATACAGAACGGAGCCTTCACTACAAAATGTTTTCGATTGAGTGTCGTAAAACTGACTAAATCCAGAGCCAATCACAGGAAGAAAAAACCCAGTGAACCAATCACGAACTGAAGTAATTCACGATTGGTTTTACTTCAACCAATCACGAGGAAAAGTAAACGCAATCGTGGATAACTGCTAACCAATCAAATCCGAAAGCAATCACCTCATTACTTTTCGACACTCAATCCACCGTACTGAAAAAGATGGCGACCGTACATTTGACCACAATCCCTTGCGAACCTAACACAGTCAAAATAATACGTAGAAATCCTCTCTTCTTCAGTGAATTGGCAACAGCACTTGAACTGGCTTGTTTTTAAGATTTAAAGCCTCACCTACCGCGATTTTATAACGGATTTAAAGTTTTTCGCGCGCAAAGGATTGTGGGTAAAAGTACAAGCCGTCATATTTTCGGTACCGGGTGGATAGAAAACCGATCTATCAGGAATTTTTAACCCGCACTGGAATGCTAAATGTATCCTGGATATCATATTTTAATATATAATTATCGATGAAATACCTCACACGTGAAGATATCACTTTTGAAAATATGACTGGCTTTCAAAGATTGGCTAGCCTTTTTAGTAAGAGATTGAAACTGGTATTTCATCGATAATTATATATTAAACAGAACATTACATGGCTGCTTGGAGATACGAATTTTATCTTCTCGTGTTGATGAAATATCTTACTCATTCGCTGCGCTCACTCGTAAGATATTCCATCAACACGAGAAGATCTAAAATCCGTATCTCCGCGCGGCCATGTAATATCCTCTATATATTAGTAAGCGTTTGTAGCAGTGCAAAATGTGCCTGAACTTATTCCGGAATCATGCATTGCGTTCAATCGAACATGTCCTTAGGGATCTTTGGCATGGGATTAAAATAGTTATTTCATCCTTTTCTTGGCATGCCGTGGAATATCCCACTTGTCACTTGTATTTTCTCTGTGAGCACACTCGCCTAAAAACTCTTGACTACAGAAAATATATGTGAGGCGTGGGAAGTTTCATGGTCACGTATTTATTGCTTGATAGTCGAGAAAAAATAGTAGCTAGATGCCTTTAAGGATATAGTTTTGTAAAATTTCATATTACGCCGATCGGCTGAGTGCTGGGAACTTCAGCTGTTCCTGGAGAAATAAGACAAATTCCAAATAACAATTAACCAACGAGACTTCAAAGGTGTTAATCTGTAAAAAGAGTTTTAGAAATTGCAACTGAAAATATATTAACCGGAATTCGTTACACATACATTAATCTAATGAATTTCCACAGTAAAAAAACGTTTGTCTTACTTAAACGGCGCCTTCAAACGGGCGCATTCAATTTTAAATACACCGCAATGAGTTCTGAGTTATATATAAGTCTTAATCAAATGCGATTTGGTTTTACAAACTCGCTCAATTATTAAAAGACACATTTATGAAACTTAGACAGCAATAACATGATAATTATCAATTTGTATCAGACTTTAAAATGGAAATGTTTCAGTATACCATATGTAAAAAAAGACAATTTATAGTAAAATCGTTTTTGTATTATTTTTTAACGAACCTTTTTCATTTTATTCTCTCATATATAGCGGTAACTGGAATAAACTATTTTTATACAATAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00292	PAX	'Paired box' domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR001523	Domain	Paired domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR043565	Family	PAX family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45636	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-