Gene detail

Detailed information of Acti_000248-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_000248-T1	CAP BINDING PROTEIN	ScLC4GM_19	4945097	5007457	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_000248-T1

ATGTCGAGAGAACGAAAGAGGTACTTCGATGATGATGGTGGGAGAGCGAGAAAACGGAGACGTACAACAGAGGCAGTGGACATAGAGGACCGACTCGAGTCATTGATTACCAGAGTAGGAGAGAAGAGTACTTCATCACTGGAGAGTAACTTAGAGGGTTTGGCCAATGTGCTTGAGGCTGACTTATCCAACTACAAGGAGAGAATCTTGAAAATCATCTGCACATGTGCAACAAATCTTCCAGATAAAATTGCTATCTATAGCACACTAGTTGGACTTCTGAATGCAAAAGCCTACAAATGTGGAGAGGAGTTTTTAGACATGATGATAACCAACATGAAAGATGTGCTAGCAGAAAATCAGTTTGAGAGGGCAAGACTTATGATTCGTTTCCTGGCAGACCTTGTGAACTGTCGGGTGGTTCTGCCAATCTCTCTAATAGAGCTCTTTGAGAAATTAATGGCAGCCAGTATGGAGAGTGAAGTGCCACAGGTCCGTACCGACTGGTTTGTGTACAGTGTCATGTCTGCTCTTCCTTGGGCTGGCAAGGAATTGTCAGAAAGGAAAGGAGATGAACTTGAAAGATTGCTGTCCACAATTGATGCTTATATTAGCCAGAGGCAGCAGACGCATGTCCCAGCACTGAGGGTGTGGGCCACTGATGATGTGCACCCACAAGAAGAGTATTTGGACTGCCTATGGGCCCAAATCAAGAAGCTGAAAGTGGATGGTTGGCAGGAAAAGCATGTGAGAAGGCCTTATCTTGGATTTGAGAGTGTTCTTGAAGAGGCATTGCAGCATACCATTCCATCTCTGACAATCCCACCTCACAACGATGACATTGTCTACCCATTACCAACCATAATATATAGGATGTTTGACTATACTGACGTACCAGAGGGTCCTGCCATGCCAGGTGCTCATTCAATAGAACGATTCCTGATGGAGGAGAGTATACGACGAGTAATGAATGCACATTACAAAGATAAGAAGGAATGTGCAAACCAGCTGTTGAACATGCCAGGGAAATCAAAAGTCCCTTTTAACTACTGCGTTGTAGAGGTTGTGTTTTCTGAGCTTTTAAGGCTGCCATCTCCTCCACATATTGAAATCTTCTATGGATCGTTATTCATCGAACTCTGTAAATTACAGCCAAATGCTATCCCAGGAATTCTTGCACAGGCAGCAGAGTTGTTGTTTGAAAGATTAGACACCATGAACACAACATGTATTGACAGGATGTACTGCTGGTTAGCTTATCATCTGAGTAACTTCTATTATAAGTGGACCTGGGTTGACTGGGTACCTTATGCTGCTAACCCTGGCACTCCAAAATACATGTTCCTTTGTGAACTGCTTGAACGGTTATGCAGATTCTCCTATCAAGAGCACATGGTGGAATTGCTACCCGAAGGCTTCCAGCCACTCATTCCACTCAAACCAGAACCACATTACAGGTTTTCTGAAGAGGGTCTACCAGGAGGGGACATTGCAAAACAGCTAATTGAAGCGATAAGAGCCAAGAAGGACCCAGAAGAGTTACAAGCATTACTGAATGAGATCTCGCCCAGTGCTGGAGTACAGACAGATAATGGTGATGCTCCAATGGTTGACTCAACATATTCTGCTCTACGGATTGAAGTTTTGATGCACACAGTGCTCGAGCTTGGATGCAAGTCCATCAGCCATTCATACAGTGCACTTACCAAGTTCCATAAGATGTTCAAGTCGTTGATTCCCACGGAGGATGCCCAGGTTCACTTGCTGAAGACTTTAAAGGAATTTTGGGCTAGTGACCCGCAGATGATCGTGGTTCTTGTCGACAAGCTCGTTCGGATGCAGATCATCGACTGCTCGGCTATCATCAACTGGCTGCTTTCCAAGGATATGGTTGACGATTTTACAAGGTCTTATTCTTGGGATGCTATGAAAGGAACCCTAGACAAGATGAATAAACAAACTATCAAGGTGAGACAAGCAGTCCACGAAGTCAAGGACCAACTCTCCAAACTTGAAGAAAGGGCCAAACGACAGAGTCAGGCTGCTGAGGGCGAAGAAAAACCGAAGGACGACACTTTGGCAGACGAAATTGAAAAGAAGAAACAGGCAGCCGAAGAACTCAATGAACGACTAGAAAACGTCCAGAGGGGACAGAAACAGCTGTACCTCATCATGTTCCAAAGGTTTATCCTGATACTGACTGAGCACATAGTACGGTGTGAACAACAACAGCAAGACGTGAACACGCTGTGGTACAAATACACCACGGATCGACTGCGGGAGGTACTGCTGACGAATCACGTTCAGGTTTTCCAGTACATTCCAACCCTTGAGACGCTGTTATTTACAACCGACCTTGACTCGCACATTCTGAAGATTTTTAAGCAGTTCAAGGCACTTAGGGCATGA

Transcript

Acti_000248-T1

GTTTTCAAAAGAACATTATGATATTTATTTGTTGTTGAGAGCGTGGCTTTTTAAACAGTTTTAATAGGATCTGGTGGAACTGAAATGTCGAGAGAACGAAAGAGGTACTTCGATGATGATGGTGGGAGAGCGAGAAAACGGAGACGTACAACAGAGGCAGTGGACATAGAGGACCGACTCGAGTCATTGATTACCAGAGTAGGAGAGAAGAGTACTTCATCACTGGAGAGTAACTTAGAGGGTTTGGCCAATGTGCTTGAGGCTGACTTATCCAACTACAAGGAGAGAATCTTGAAAATCATCTGCACATGTGCAACAAATCTTCCAGATAAAATTGCTATCTATAGCACACTAGTTGGACTTCTGAATGCAAAAGCCTACAAATGTGGAGAGGAGTTTTTAGACATGATGATAACCAACATGAAAGATGTGCTAGCAGAAAATCAGTTTGAGAGGGCAAGACTTATGATTCGTTTCCTGGCAGACCTTGTGAACTGTCGGGTGGTTCTGCCAATCTCTCTAATAGAGCTCTTTGAGAAATTAATGGCAGCCAGTATGGAGAGTGAAGTGCCACAGGTCCGTACCGACTGGTTTGTGTACAGTGTCATGTCTGCTCTTCCTTGGGCTGGCAAGGAATTGTCAGAAAGGAAAGGAGATGAACTTGAAAGATTGCTGTCCACAATTGATGCTTATATTAGCCAGAGGCAGCAGACGCATGTCCCAGCACTGAGGGTGTGGGCCACTGATGATGTGCACCCACAAGAAGAGTATTTGGACTGCCTATGGGCCCAAATCAAGAAGCTGAAAGTGGATGGTTGGCAGGAAAAGCATGTGAGAAGGCCTTATCTTGGATTTGAGAGTGTTCTTGAAGAGGCATTGCAGCATACCATTCCATCTCTGACAATCCCACCTCACAACGATGACATTGTCTACCCATTACCAACCATAATATATAGGATGTTTGACTATACTGACGTACCAGAGGGTCCTGCCATGCCAGGTGCTCATTCAATAGAACGATTCCTGATGGAGGAGAGTATACGACGAGTAATGAATGCACATTACAAAGATAAGAAGGAATGTGCAAACCAGCTGTTGAACATGCCAGGGAAATCAAAAGTCCCTTTTAACTACTGCGTTGTAGAGGTTGTGTTTTCTGAGCTTTTAAGGCTGCCATCTCCTCCACATATTGAAATCTTCTATGGATCGTTATTCATCGAACTCTGTAAATTACAGCCAAATGCTATCCCAGGAATTCTTGCACAGGCAGCAGAGTTGTTGTTTGAAAGATTAGACACCATGAACACAACATGTATTGACAGGATGTACTGCTGGTTAGCTTATCATCTGAGTAACTTCTATTATAAGTGGACCTGGGTTGACTGGGTACCTTATGCTGCTAACCCTGGCACTCCAAAATACATGTTCCTTTGTGAACTGCTTGAACGGTTATGCAGATTCTCCTATCAAGAGCACATGGTGGAATTGCTACCCGAAGGCTTCCAGCCACTCATTCCACTCAAACCAGAACCACATTACAGGTTTTCTGAAGAGGGTCTACCAGGAGGGGACATTGCAAAACAGCTAATTGAAGCGATAAGAGCCAAGAAGGACCCAGAAGAGTTACAAGCATTACTGAATGAGATCTCGCCCAGTGCTGGAGTACAGACAGATAATGGTGATGCTCCAATGGTTGACTCAACATATTCTGCTCTACGGATTGAAGTTTTGATGCACACAGTGCTCGAGCTTGGATGCAAGTCCATCAGCCATTCATACAGTGCACTTACCAAGTTCCATAAGATGTTCAAGTCGTTGATTCCCACGGAGGATGCCCAGGTTCACTTGCTGAAGACTTTAAAGGAATTTTGGGCTAGTGACCCGCAGATGATCGTGGTTCTTGTCGACAAGCTCGTTCGGATGCAGATCATCGACTGCTCGGCTATCATCAACTGGCTGCTTTCCAAGGATATGGTTGACGATTTTACAAGGTCTTATTCTTGGGATGCTATGAAAGGAACCCTAGACAAGATGAATAAACAAACTATCAAGGTGAGACAAGCAGTCCACGAAGTCAAGGACCAACTCTCCAAACTTGAAGAAAGGGCCAAACGACAGAGTCAGGCTGCTGAGGGCGAAGAAAAACCGAAGGACGACACTTTGGCAGACGAAATTGAAAAGAAGAAACAGGCAGCCGAAGAACTCAATGAACGACTAGAAAACGTCCAGAGGGGACAGAAACAGCTGTACCTCATCATGTTCCAAAGGTTTATCCTGATACTGACTGAGCACATAGTACGGTGTGAACAACAACAGCAAGACGTGAACACGCTGTGGTACAAATACACCACGGATCGACTGCGGGAGGTACTGCTGACGAATCACGTTCAGGTTTTCCAGTACATTCCAACCCTTGAGACGCTGTTATTTACAACCGACCTTGACTCGCACATTCTGAAGATTTTTAAGCAGTTCAAGGCACTTAGGGCATGATGAGCTAATGAAGAGAACTACTGTAACCGGACCTGCATCAAGCCAAAGACTTGTTTGAACCAAGGAAAGATAATCGCACGAGGATATGTCGCGTCCTATTTTCTTAGACAGAAAACTGGATTAAGCCGTGTCCTAATAGGGTGTTCCTCGACTGTCAACTTTACATACCGAATGGGCCTTGCAGCTGCGCTAACTACTCGCTTTCCAAGTAGTGCAACTATTTGGGATGAAAACGATGTTTTAGAACTAAGTACAGTACCCAAACCTCTCACGAGCATTTCAGTCTTACTTTTAAATTGTTACACTAAAAAAACCATCGTTATTTTTAACAAGATACCATAGCATCCCTGGGAGTTAATCAGTATTGTTGACTGAAAATTCCCTGAGGTTGTGAGTATACAGCTTTACCTTTGTCATAGACTTTCGCGCCCACTTTCAACTTTTCGCATCAGCCTTTTTTTCACGGAGTAAAGCTCTGCCATATTAAGATATCGATTTTCTTTGATAATGATGGTATTTTAACTTAAAGTGCAAGTAGCACCATAAAACAGTATGATCTCTTTTTGCCCAAAATTCTAGTTCTGATAAAGTTCAGTGTCTAACTTAGTTTTCTTTGAGAGGCAGGAGCAGCAGTAAATTATTATAAACACTACCCGAATTGCGGGATTGATTCATCTTGTGATGTCACAAGGGAGGGAGTTGATTCATATTATGACGTCAAAGGATTCATGAAAAGTAACAAAAAATAGGGATTAAATGCCAGAAATGTTAAAAAATTGCAAGATTAATACCTTTTTGTGAGAAACAAACAATAGTACAATATATATTTTTATTTTTTGACACGATACTTGCACTTTAAAGAAAAAATGTCATTTCCTCTGTAACAAATCTGCTCTCTTAAAATAAACACTACATCGTAGTTCTAACTGTTACACTCTTTTGACCAATGAGAGACAACACTTTGTCTTTTTAGTTTGTCACATGCAACAATCTATTCTTTTTTTAAATAAACATAACTTTCAACATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02854	MIF4G	MIF4G domain	Repeat	Interproscan
PF09088	MIF4G_like	MIF4G like	Repeat	Interproscan
PF09090	MIF4G_like_2	MIF4G like	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003890	Domain	MIF4G-like, type 3	Interproscan
IPR015172	Domain	MIF4G-like, type 1	Interproscan
IPR015174	Domain	MIF4G-like, type 2	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR027159	Family	Nuclear cap-binding protein subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12412	CAP BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0000339	Molecular Function	RNA cap binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005845	Cellular Component	obsolete mRNA cap binding complex	Interproscan
GO:0005846	Cellular Component	nuclear cap binding complex	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0016070	Biological Process	RNA metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-