Gene detail

Detailed information of Acti_000172-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_000172-T1	IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H	ScLC4GM_19	3906077	3912056	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_000172-T1

ATGTTAACTGTAACAGTTCTAGACTATGGAGCAGGAAATATGCGTAGCTTGGTGAATGCTCTCAATTTTCTTGGCTATAAAGTGACATTCGTTAAAAGCCCCGATGACATCGCAAAAGCCGAAAAACTAATTTTTCCAGGTGTTGGAGCTTTTGGGAGTGCCATGAAAAGCTTAAGTGATTTTGGGTTCGTAGAGCCTTTGAGAGATTACATCCATCAGAACAAGCCATTCTTTGGTATCTGCATTGGACTGCAAACTTTGTTCAATGAGAGTGAAGAATCTCCTGGCGTTAAAGGGCTTGGGATAATCCAAGCACACGTAAAACTGTTTAGCACTCCAGGGCTTGTGGTCCCACACATGGGATGGAATGGACTTAATATCAGACGTAGCCAATCACCTCTGGTCTGTCAAAAATCGGCCGGAGAACAGAAAGTCTACTTTGTTCATTCATATGCTGCCCCCTTTGATGAAGTCACGAAGGAGTGGACGCTGGCCACGACTAATTATGGCTCTGAATTCGTCTCCATGGTCCAACGTGGTAACGTAGCTGCCACTCAATTCCACCCTGAGAAAAGTGGCCCATTTGGTCTAAGTATTCTTGACAACTTTTTAAAAGGCTTTCCATTGGATAACCAGACCACCTATGTACCATTGCTTCCAATCACCAAGGAGACACAACTTGCTAAACGTGTTATTGCTTGTTTAGACGTGCGTACGAATGACGCAGGGGAACTGGTTGTGACTAAGGGGGAGCAGTTTCAGGTTAGGGAAATAATAGCTGAAAACGGTGGCGACATTACAAGAGGAGATGTTCGAAACCTTGGCGAGCCTGTCGTTTTGGCTGAGCGGTACTACAAGGAGGGAGCTGATGAAATTGTATTTCTCAACATTACAAGCTTCAGGGATTCACCAATTCACGATTTGCCAATGTTAAAAGTTCTGCGCCAGTCGTCCGAGAGGATCTTTGTGCCTCTTACTGTTGGCGGTGGAATCAGAGATCTTGATGCGCCTGAACCTGATTGCTTGTCGGAGACTGGAGAACCAATTATTAAACGTTATTCCGCCTTGGAAGTTGCTGCTCTGTACTTCAAATCAGGTGCCGATAAAGTGTCGATTGGTAGCGACGCAGTCTACGGTGCAGAAGAGTTCATAGCCTCGGGTGGCAAGAAAACTGGCCGCACGTCAATCGAGATGATCGCGGAGAGGTACGGTCGACAAGCGGTCGTTATCTCTGTTGACCCCAAGGTCGTGTACGTGATGTCCCCCGAGACCACCAGACACCACACGGTAAAGGCACGTGTCCCAGGCCCTAATGGCGAGCAGTACGTGTGGTGGCAGTGTACGGTAAAGGGAGGCCGTCAGTTACGTGACATCGGTACTTATGAGATGGTCCGGGCGTGTGAGGCGTTGGGAGCTGGGGAGATTGTCCTGAACTGCATTGACAAAGACGGAACAAATGCTGGCTATGACATCGACTTGACTGCTATGGTAAAAGGAGCAGTGAGCATTCCCGTCATTGCATCAAGCGGAGCAGGGCGCGTGCAACACTTTTCACAAGTCTTCAGGGAGGCGAAAGCCGATGCCGCGCTGGCTGCTGGGATATTTCATCGTGGCGAAGTGGGCATCCAAGACGTCAAAGAGTATGTACGTGATGAAGGATTTACTGTGAGGATCTGAATATCAACTAAAACTAGACAAGACGTTAAAGAGTATGTACGTGATGAAGGATTTACTGTGAGGATCTGAATATCAACTAAAATAGACAAAACGTTAAAGAGTATGTACGTGATGAAGGATTTACTGCGAGGATCTGAATAAATCTCAATTTCTCGCTCATGAATAATTAATGAGTTCGACACCAATGTACCTTCTCAAACTCGTTAATAATTCATGTTCTGATTGGCCAACCACAATCTCTAATCTGGTCAGGTGGATGAGTTTTGAAACCCAATGAAATACCAGTTGAAAAGAAGCGTATGTAAATGTTCGGTTTAGCCATTCGCTCTCAAGAAGAGAAGACGAGGTAGATACTCAGGTTAAGCCCGTCCCGTTCCAGAGCTGAGGTTTCTCCGGTTGCTCAGAAAACAGAACAGATCATTTTCCCAGCTCTGCCGCTGCCGCGAGTTTATACACGATAAACGTTTCTAATATATGACCTCACTGCCTTCAAATGTATTGTCGTGGTGAGATCAGTCAACTGCCGCCAGCTCGGCCCGAGGTTTTGATAACATCTCAAACAATACCTGTATTCATAAATCATTAGGAAGTATTGTTTGGCTGGTTATGCTGCGTACAATTATTGATCACAAGGCTTGTCGTTGTTATTTTCTGTTGGTCATTTCACCAAATGTGCGAAGAGGCGATCAGGGAGCCGTGAAACGGCGAGGAGGGAAGAGCGTCAGTTGACTGATCGTACCGCGCCAATAGATTTGAACTAGGGACAAGATTTGTCCCTCCTTCCTGGTTGGAGGAATATCCAATTACCGTATAGCATTCTCCGATTGGCTGTCGTTTACTGATAGGGGAAAGGGATTGAGTTAGAAATTGCAATCAACGGGAGTGGGATAAGTGGAAAAGTGAACGTCAGTTTCTCGCCCCAGCATCGAATAGCGAGAACGTTTATAGCTGTTTCTTAAATAATTTTACTAAGATATTTATGATGCGACTGTCAAATAGCACGGCTTATTCAACAATGGCATCACTGGCGGGGTGACTTGTCCCTGGTCACAGAGGGATCAGAGAAAGGCTAGAGATCGAGAGAAAGAAACCTCATTCGCGTGTTTGACCGTGGTAACAAAAACACTCGAAAGCAATATCATTTTCTTTCTTGTGTTTTGATCACTTATTTTTGATATATAACATCAAGAACTGGGCAATTGCTTAGAAAAAGGTATAAATCAAGTAAATAATGTCTGGCACTGTAGTGTATTTTGTTTGCTTGTGTTGTGTCGAGTTTAATTATAAACATTTTGCAATTCGGGCCAGTAACACATTTCCCGGGCGGCTGTCCTTGGAAGTTCTTTTACAGGGAGCATTTTGAGAGGAACAATGTGATATTGTGATGCTTTCAGCTATCTGCGGTCAACAAACAAAAGACTAAAAGTAGACTTGGTTAAGTAAATTTATTTTACAATTTCTCCCAACAAAATACGAGATTCAATTTCCTACTACCCTGCGTAAGTATTGCAGTATTTTGCCGCATAATATTCAGGTATGCTACACAGGGTGTGGTATTCATTTGTCACAGCAATGCGTGACTCGACAGCGGAGGCAGTTCAGGTACTCTGAAGGACAACTCCTTCATCCTGAGTATTTCCGTGTCAAATGCCTGCGCACGCCGCTCCTGTTGCAACCAGTACAACATCTCTGTGCGATCCACTTGCATCTTCTCCACATAGGGACGACCCTGAAAAAACAAGTCCGGATTTCGTATATGAATGTGAATAATAAGGGATGTAAGTATAGTACGGCTATGTCAAAGCATTCCTGAGTAGTGAACACTGAAATAGCTTCCTAGTTCTGTCCTTTTTCCCCACTGATCCAATGAAATCGAAGTAGCAACAGCTATGATTGGATTGTACGAAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00117	GATase	Glutamine amidotransferase class-I	Domain	Interproscan
PF00977	His_biosynth	Histidine biosynthesis protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004651	Family	Histidine biosynthesis, HisF	Interproscan
IPR006062	Family	Histidine biosynthesis protein	Interproscan
IPR010139	Family	Imidazole glycerol phosphate synthase, subunit H	Interproscan
IPR011060	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR014640	Family	Imidazole glycerol phosphate synthase HisHF	Interproscan
IPR017926	Domain	Glutamine amidotransferase	Interproscan
IPR029062	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR050064	Family	Imidazole glycerol phosphate synthase HisA/HisF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21235	IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000105	Biological Process	L-histidine biosynthetic process	Interproscan
GO:0000107	Molecular Function	imidazoleglycerol-phosphate synthase activity	Interproscan
GO:0016763	Molecular Function	pentosyltransferase activity	Interproscan
GO:0016833	Molecular Function	oxo-acid-lyase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-