Gene detail

Detailed information of Acti_000090-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_000090-T1	TRANSLATION ELONGATION FACTOR-RELATED	ScLC4GM_19	1268099	1299336	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_000090-T1

AAACAGTCTTGTTTCTCTTTGCCTTTTGACTAAAGAATTTGGTAGCATTCCTTCACCTGGTCGGACATTAGTGGAGACTTGATTGCAGAGAATCAAAATCTTTTAACAGCGACCAAAGTTCTTGAAGCTCACAACAAAGCATCATCAAAGTCCAACAGGACAAAAAGAGCATCCGGTTTAAATTATTACTTATACAATGTACATTGTCCATAAGTTGGCCTTGAAAAGTCCTTGAATTGTATTGTACCAAAACTCATAAAAATAATTGAAACCTCCTTGGATGTTTGAGAAGACAGTAAACAGTCTCATTTTTGCCTCCAAAAGACCATTAGAGTGGCACTAAATGATTCATCATGTAAACAAGTCAGAGAAAGGTCTAAATAGCGTAGAATTTTGAGGTCATTAAATGTGTGAAACTGTAAAAAAAACAAGTCCTTAAAAAGTGTTGATTATCCTTGAAAAGTCCTTGAAGAAAAGGTACTGAATTTTGTATGAACCATGTTATAATAATCTGTTGATTTGTAAGGAACTTGAAGGTAAGCCGCTGCTCAAGGCCATCATGAGACGCTGGATACCTGCTGGAGACACAATGCTGCAGATGATTGCCATTCATCTGCCTTCCCCTGTTGTGGCACAGAGATACCGTATGGAAATGCTGTATGAAGGTCCAATGGATGACCCAGTTGCTTTGGGTATCAAGAACTGTGACCCCAAGGGTCCTTTGTGCCTGTACATTTCTAAAATGGTACCAACAACTGACAAGGGACGTTTCTATGCGTTTGGTCGTGTGTTTTCTGGTATTGTTAGTACTGGATTGAAAGTCCGTATCCTGGGACCCAACTATGTCCCTGGCAAGAAAGAAGACGTGTTCAACAAGTCGATCCAGAGGACAATTCTTATGATGGGACGATACACTGAGGCTATTCCTGATGTTCCTTGTGGCAACATTGTTGGGCTTGTAGGAGTGGACCAATTCTTGGCTAAGACTGGAACTATTACCACCTATGAACATGCGCACAATTTGAAGATGATGAAGTTCTCTGTTTCACCAGTAGTACGTATTGCAGTGGAGCCTGTGAACGCATCTGACCTGCCAAAACTGGTTGAAGGTCTGAAGCGTCTGTCCAAGTCTGATCCTATGGTTCAGTGTACTATTGAGGAGAGTGGTGAACACATTGTTGCTGGTGCTGGTGAACTACATTTGGAGATTTGCCTGAAAGATCTTGAAGAGGACCATGCCTGCATTCCTATCAAGAAATCTGACCCGGTTGTCTCCTATCGGGAAACCGTGACCGAGGAGTCTGATAGGACGTGCCTATCGAAGTCCCCTAACAAACACAACAGACTATTCCTGAGGGCATTACCTCTACCAGTAGGCGTAGCAGAAGAAATTGACGATGGCACTGTCAGTGCCAAGATTGATTTCAAGACTCGTGGCCGTTATCTTGCTGACAAGTATGACTTTGATGTTGGCGAGGCAAGAAAGATCTGGTGCTTTGGCCCAGAGGGAACTGGGCCTAACCTCCTGATTGATGTTACCAAGGGAGTACAGTATTTAAATGAGATCAAGGACAGTGTTGTCGCCGGATTCCAGTGGGCCACAAAAGAGGGACCTCTATGTGAGGAGAATGTGCGTGGAGTACGGTTCAACATCCATGATGTGACGCTTCATACTGATGCCATTCACCGTGGCGGAGGCCAAATCATCCCAACCACCCGACGGGTACTGTACGCATGCATGCTAACTGCCAAGCCTACGCTGATGGAGCCAGTCTATTTGTGTGAGATCCAGTGCCCAGAAGGTGCTGTGGGTGGCATCTATGGTGTACTGAACAGGAGGAGAGGTGTGGTATATGAAGAAGTTCAGGTTCCTGGCACACCCATGTTTATTATCAAGGCTCACTTGCCTGTCATGGAGTCCTTTGGTTTTACTGCTGACCTACGTTCCAACACGGGTGGGCAAGCGTTCCCGCAGTGTGTGTTTGACCACTGGCAAAACCTACCTGGTGATGTGAATGACGAAACCTCCAAACCTGGTAGTGTAGTCAAGGATACCAGAAAGAGGAAAGGTCTGTCTGTGGAGATTCCGCCCCTGGATAAGTACTTGGACAAACTCTAATCACCAACCATTGTCATCAATTCTTGCAATAGTGCTCAGATCACTGAGGGACCCAAAACATATCACTAAAAGCTAGAATATGGACTGGCCAGAAGTAGTTGTCATGGGCAATAAGCTGACATAAGGTTGGAAAAATATGAAGCCTGTACAATGGTCTCGAGAAATAATTAAAAATACTGAAACCTGTTTGCAGGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00679	EFG_C	Elongation factor G C-terminus	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF03764	EFG_IV	Elongation factor G, domain IV	Domain	Interproscan
PF14492	EFG_III	Elongation Factor G, domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000640	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR005517	Domain	Translation elongation factor EFG/EF2, domain IV	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR035647	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR041095	Domain	Elongation Factor G, domain II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42908	TRANSLATION ELONGATION FACTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-