Gene detail

Detailed information of pred2_49589.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_49589.1	DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS	Sc3x4tf_198	9875128	9830322	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_49589.1

ATGTTGAACAGGGACTGGGAGGAGGAACTACAAGATAAAACACCGAATGAGGCCTACTCTATATTCGTCAACCACTACAACACTGCTGTGGAACAAGGCATACCAACATATTACTCAACGGTATCAAATAAGTATGTTAAACCCGTATGGATGAATCACTCCACCCTAAAGCTGATAAAGAATACACACGACTTCATAGAGTACCTGAATACACAAGGTGAAGATTATGAAAAATATACAACCATAATAAATATAGTTACTCGTCAACTAAGAAATGGCCGTCAAGACTATGAGAAGAAATTAACAACAAAAGTCAAAGAAAATGTGAATGTATTCTGGAAATGTGTTAATAGAAAGAAAAGTCGTAGTAGCATACCAAACCTTCAGCAGTCAAATGACATCCTAACAAGCAGTAGACCAACAGAAAGCAATTTCGTATATTATGACTTATTCTATTTTACAGAGCCAATTCCTGGAAATGAAGACATTCCAGATGAAGAAGATATCTTATCTGAAGATTTGGAAGAAAGCATCCCTCCTGAAAAGAAAATATCTTCTGAGGAGGATGGTGTTCAGGTTGCTCGTAAATCACTGTCTGCCGCTCAGAAAGCCCACATTGAGAGAAATCGGCAAAAGGCATTGCTACTACGACAATCCCGGTTGACAGCCAAATCATTTCAAACTAAAGAAGAAAACAAAAATTTGATGAAGATTCCTGCCAAAGAGATTGACACTGGAGCAGGATTTTTTATGGATGAAGAAGAAGAATTGCAGCTTAAAAATCAAAAAGTGGTATATGTTAAAGGTCCTGCCATGACCAACAGCAAAGATTTGCTTTGTGAAGATTGTGGTCAACAGTTTGTAGAATCCTATCTTCATAATCATTTCAAGAAAAGTGTTTGTACTAAGTGCCGGGAAGACAATGCAGACAAATACAATCTCATCACAAGGTCAGATGCCAAAACCAAATATTTGTTGAAAGATGTAGATTTCGACAAAAGGGAACCACCCTTAAAATTTGTTGTTCGAAAGAATCCCCTCAATTCAAGGTGGGGAGACATGAAACTTTATCTAGAATCACAGGTATCTGTACGTGCACTGGAAGTATGGGAATCAGAGGAAAACATTGAGCAGGCCAAGGACCTCAAATGTGAAAAGCAAAACAAAATGAAAAAGAAGAAATTTGAAAAGAAAATGAAAGAACTCCGGATGTCTGTACGAAGTAGTTTGTGGCGCAAACAGACTGAAAATCATCAACATAGTTTTGGTGAAGAGACATATGATGAAGAAGAAGACATGTACTCCCAAACTTGTTCCACTTGCGGCCATGTGATGAGCTATGAGAAGATGCAGAGAGACCAATCTCCACGTAAAAAGACTTCTAGTGCTTCATTGAATTCAACTTCTACAAAAAAGTATGTTGTGAAACAATTAAGCCTTGTTTATACTTCTAATTACTTATTACAGTGCGAGAACATGAACAAAAAAAGAAAAGCAGAAAGTGATAAGAGTGAATTCAATGACCACTGGGGAAATGAGTTATTTTTAGTGGGTCCTTCAGGAAAACCGTTGTACAGTATTTGTAAAAGAAGACACGATCTTAATAGACACTACAAAACACAACATCAGACAGAAATGGAAAGAAAACTGAAGCTAGTGCCTGGGTCAGAGTTACGGGAAAATATAAATGATGAAGGTTTGGTACTGAAAGAAGCGTTCTATGAAACTGCTTTAGCGTTGGTCAAAAAACGCAAACCTTTCTCTGATGGAGAAGAAATTGTTAGGCCTTGTCTTGGTGATAAAAATATCGAAAGAAAAGTAGACGACATTACACTGTCAAAGCAAACAGTTACAAGACGTACCGAAGAATTCTCTCAAGATGTATCTCAGCAACTGAAAGACCTTATCCATGCTTGTACTTTCTTTTCTTTAGCTTTGGATGAATCTACCGACATAAGTGATATATCCCAGTTAAGCATTTGTATAAGAGGAATTGGTGGCAATTTTAATGTCTTT

Transcript

pred2_49589.1

ATGTTGAACAGGGACTGGGAGGAGGAACTACAAGATAAAACACCGAATGAGGCCTACTCTATATTCGTCAACCACTACAACACTGCTGTGGAACAAGGCATACCAACATATTACTCAACGGTATCAAATAAGTATGTTAAACCCGTATGGATGAATCACTCCACCCTAAAGCTGATAAAGAATACACACGACTTCATAGAGTACCTGAATACACAAGGTGAAGATTATGAAAAATATACAACCATAATAAATATAGTTACTCGTCAACTAAGAAATGGCCGTCAAGACTATGAGAAGAAATTAACAACAAAAGTCAAAGAAAATGTGAATGTATTCTGGAAATGTGTTAATAGAAAGAAAAGTCGTAGTAGCATACCAAACCTTCAGCAGTCAAATGACATCCTAACAAGCAGTAGACCAACAGAAAGCAATTTcgtatatTATGACTTATTCTATTTTACAGAGCCAATTCCTGGAAATGAAGACATTCCAGATGAAGAAGATATCTTATCTGAAGATTTGGAAGAAAGCATCCCTCCTGAAAAGAAAATATCTTCTGAGGAGGATGGTGTTCAGGTTGCTCGTAAATCACTGTCTGCCGCTCAGAAAGCCCACATTGAGAGAAATCGGCAAAAGGCATTGCTACTACGACAATCCCGGTTGACAGCCAAATCATTTCAAACTAAAGAAGAAAACAAAAATTTGATGAAGATTCCTGCCAAAGAGATTGACACTGGAGCAGGATTTTTTATGGATGAAGAAGAAGAATTGCAGCTTAAAAATCAAAAAGTGGTATATGTTAAAGGTCCTGCCATGACCAACAGCAAAGATTTGCTTTGTGAAGATTGTGGTCAACAGTTTGTAGAATCCTATCTTCATAATCATTTCAAGAAAAGTGTTTGTACTAAGTGCCGGGAAGACAATGCAGACAAATACAATCTCATCACAAGGTCAGATGCCAAAACCAAATATTTGTTGAAAGATGTAGATTTCGACAAAAGGGAACCACCCTTAAAATTTGTTGTTCGAAAGAATCCCCTCAATTCAAGGTGGGGAGACATGAAACTTTATCTAGAATCACAGGTATCTGTACGTGCACTGGAAGTATGGGAATCAGAGGAAAACATTGAGCAGGCCAAGGACCTCAAATGTGAAAAGCAAAACAAAATGAAAAAGAAGAAATTTGAAAAGAAAATGAAAGAACTCCGGATGTCTGTACGAAGTAGTTTGTGGCGCAAACAGACTGAAAATCATCAACATAGTTTTGGTGAAGAGACATATGATGAAGAAGAAGACATGTACTCCCAAACTTGTTCCACTTGCGGCCATGTGATGAGCTATGAGAAGATGCAGAGAGACCAATCTCCACGTAAAAAGACTTCTAGTGCTTCATTGAATTCAACTTCTACAAAAAAGTATGTTGTGAAACAATTAAGCCTTGTTTATACTTCTAATTACTTATTACAGTGCGAGAACATGAACAAAAAAAGAAAAGCAGAAAGTGATAAGAGTGAATTCAATGACCACTGGGGAAATGAGTTATTTTTAGTGGGTCCTTCAGGAAAACCGTTGTACAGtatttgtaaaagaagacacgatcttaatagacactacaaaacacaacatcagacagaaatggaaagaaaactgaagctagtgcctgggtcagagttacgggAAAATATAAATGATGAAGGTTTGGTACTGAAAGAAGCGTTCTATGAAACTGCTTTAGCGTTGGTCAAAAAACGCAAACCTTTCTCTGATGGAGAAGAAATTGTTAGGCCTTGTCTTGGTGATAAAAATATCGAAAGAAAAGTAGACGACATTACACTGTCAAAGCAAACAGTTACAAGACGTACCGAAGAATTCTCTCAAGATGTATCTCAGCAACTGAAAGACCTtatccatgcttgtactttcttttctttagctttggATGAATCTACCGACATAAGTGATATATCCCAGTTAAGCATTTGTATAAGAGGAATTGGTGGCAATTTTAATGTCTTTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01286	XPA_N	XPA protein N-terminal	Domain	Interproscan
PF05181	XPA_C	XPA protein C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000465	Family	XPA/RAD14	Interproscan
IPR009061	Homologous_superfamily	Putative DNA-binding domain superfamily	Interproscan
IPR022652	Conserved_site	Zinc finger, XPA-type, conserved site	Interproscan
IPR022656	Domain	XPA, C-terminal	Interproscan
IPR037129	Homologous_superfamily	XPA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10142	DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000110	Cellular Component	nucleotide-excision repair factor 1 complex	Interproscan
GO:0000715	Biological Process	nucleotide-excision repair, DNA damage recognition	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0006289	Biological Process	nucleotide-excision repair	Interproscan
GO:0033683	Biological Process	obsolete nucleotide-excision repair, DNA incision	Interproscan
GO:0070914	Biological Process	UV-damage excision repair	Interproscan
GO:1901255	Biological Process	nucleotide-excision repair involved in interstrand cross-link repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-