Gene detail

Detailed information of pred2_49538.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_49538.1	METHIONINE SYNTHASE	Sc3x4tf_198	5361420	5314756	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_49538.1

ATGTATACCTATGTCTTCAAACAGATTGAAACTACTCTTCAGAAAAGAATTATGATATTTGATGGTGCCATGGGGACAATGATTCAGAAGCATCAATTGGAAGAAGAAGATTTTTGTGGCACTTTACTGGCAGACAGCCCCAAACCACTGAAAGGAAATAATGATGTACTTAGCCTGACCAGACCAGACATTATTTATGATATTCACCGGAAATATTTTGAGGCTGGAGCAGACTTTACAGAAACAAATACATTCAGTGGAACACGAGTTGCTCAGGCTGACTATGGTCTGGAGCATCTGGTATATAAAATGAATTTTGAGTCTGCTAGATTAGCTAGACAGGCAGCAGATGATGTTTTTATGGCCACGGGTATTCCCAGGTATGTAGCTGGTGCTATTGGGCCTACAAATCGTACGTTATCTTTGTCACCTTCTGTTGAGAAAGCTGAATACAGAAATATCACTTTTGATGAACTTAAAGATGCATATAGTGAACAAGTACAAGGACTTCTGGCTGGTGGTGTGCATGTTTTATTAGTGGAAACTATATTTGACACTGCAAATGCAAAAGTGTCAGGTACTATTGTAGACCAGAGTGGAAGGACACTTTCCGGACAAACAACTGAAGCATTTGTTATAAGTGTTTCACATGCTAACCCTATGTGTTTAGGACTGAACTGTGCACTTGGAGCTGTGGCCATGAGGCCTTTCATTGAAGTGATTGCTAAAAATACTCCTGCGTATGTGATATGTTACCCAAATGCAGGATTACCGAATCCTTTTGGTGAATATGATGAAAGTGAAGAGGTGATGGCAGCAAACATGAAGTCTATTGCCCAGGATGGTTTGTTGAATATAGTTGGAGGCTGTTGTGGTTCAACTCCCAGTCATATCAAAGCAATTGCTGAGGCATTGGCTGATTGTCCTCCTCGAAAGTTGCCTGGTGATATACATGCTTCATTTCTACAGTTGTCAGGTTTAGAACCCATGTATATTGGTCCCTACACCAACTTTGTTAACATTGGGGAAAGATGCAATATGTCTGGTTCCAGAAAATTTGCCAAATTAATTAAAGATGATAACTATGAGGAAGCTTTGTCCATTGCCAAAGAGCAAGTGACCAATGGAGCCCAAATTATTGACATCAATGTGGATGATGGGATGCTGGATGGAGTAGAAGCTATGAAAACATTTGTCAACCATATTGTTCCAGAACCAGACATTTCAAAGGTTCCCTTGTGCATTGATTCATCTAACTTTGCTGTGATTGAGGCTGGCCTTAAATGTTGCCAGGGTAAATGCATTGTGAATAGCATCAGCTTGAAGGAAGGAGAGGAAGATTTCATACATAAGGCAAAACTAATCAAATATTATGGGGCAGCAGTCATTGTGATGGCTTTTGATGAGGTTGGACAGGCAACTGATGTGGAGAGAAAACTTAAAATTTGTCAGCGTTCATACAAGATTCTAACTGAGAAAGTCGGGTTCATTCCACAGGACATCATTTTTGATCCCAATATTTTGACTATTGCAACAGGAATGGAAAGTCACAATGTTTATGGATTAAATTTCATTGACTCAATCAAACTTATCAAGTCAACTCTTCCTGGGGTGCGGATTAGTGGTGGTGTATCAAATCTATCATTTGCCTTTCGTGGTAACAACCCTGTCCGAGAAGCTATGCACAGTGTTTTCTTACATCATGCAATTGCGGCTGGAATGGACATGGGAATTGTCAATGCTAGTGCCTTGCAAGTTTACACAGATATTGATAAAATGTTGTTGAAACTTTGTGAAGATGTGTTGTTTAATAAAGACTTTGAAGGTACAGACAAACTCTTGCTCTACGCTCAGGATATTCATAATACGGGTAAAAAGTCTGTGGTCACTGAAGAATGGCGCTCATATAGTTTAGAAGAACGAATTGTGTATTCGCTGGTTAAGGGAATTGACACGTACATTGTAACTGATATGGAGGAGGCCCGTAACCGTACAGATTTATATTCTGGTCCCTTGAAAATAATTGAAGGTCCTCTGATGACAGGTATGAATGAAGTTGGTTCACTATTTGGATCTGGGAAGATGTTTCTACCCCAGGTTATTAAATCAGCCAGAGTAATGAAGAAAGCTGTTGGGTACCTTCTACCCTTTATGGAATTGGAGAAACAAAAGAATGCACAACATGGAATTGTACAGGAGAGAAGTTACAATGGGACTATGGTTATTGCTACAGTGAAAGGAGATGTCCACGATATTGGCAAAAATATTGTTGGTGTTGTTCTTGGTTGTAACAACTTCAAG

Transcript

pred2_49538.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00809	Pterin_bind	Pterin binding enzyme	Domain	Interproscan
PF02574	S-methyl_trans	Homocysteine S-methyltransferase	Family	Interproscan
PF02607	B12-binding_2	B12 binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000489	Domain	Pterin-binding domain	Interproscan
IPR003726	Domain	Homocysteine-binding domain	Interproscan
IPR003759	Domain	Cobalamin (vitamin B12)-binding module, cap domain	Interproscan
IPR006158	Domain	Cobalamin (vitamin B12)-binding domain	Interproscan
IPR011005	Homologous_superfamily	Dihydropteroate synthase-like superfamily	Interproscan
IPR011822	Family	Cobalamin-dependent methionine synthase	Interproscan
IPR036589	Homologous_superfamily	Homocysteine-binding domain superfamily	Interproscan
IPR036594	Homologous_superfamily	Methionine synthase domain	Interproscan
IPR036724	Homologous_superfamily	Cobalamin-binding domain superfamily	Interproscan
IPR050554	Family	Methionine Synthase/Corrinoid	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45833	METHIONINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0008705	Molecular Function	methionine synthase activity	Interproscan
GO:0009086	Biological Process	methionine biosynthetic process	Interproscan
GO:0031419	Molecular Function	cobalamin binding	Interproscan
GO:0042558	Biological Process	pteridine-containing compound metabolic process	Interproscan
GO:0044237	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0046653	Biological Process	tetrahydrofolate metabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0050667	Biological Process	homocysteine metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-