Gene detail

Detailed information of pred2_49517.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_49517.1	SORTING NEXIN	Sc3x4tf_198	3910139	3877620	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_49517.1

ATGGAAACTGTTCGGAGTATAATACTAGGTGTTGGGAGTATGGCATTGGCCATTCTCTGGTACCATAGTATTTTTGAGACTGTTGCTTTTGGTATTCTCTACATTTCTGTCTGCATTCTTGGGATGTTTGTTGGGCTCAAATGGTTCCTGATGAGAGGTCAGTCATACCATGCTGCTTTACCCACTCAAAAACCAAGTTTGGTCAGCATGCTTGTACAGAAAATGGTGACAAAGAAGGCCGCTTGTCAGGTAAATCCCAAGATAGTTGTGACAACACGGAATTTAGACTTGGCCATCCAAGAAATAATGGACTTGACTATTAAAGATTTTGTTATTAGCTGGTATAAAGATTTTGGTCAAGATAACCAGTTGATTGCTTCTCTGATAAAATCTGACATCTGGTCTATGGTAGATACTCTCTCAACACGTTTGGCTAAGGTGGACATGGTGAAATTTATTACACAGGACCTTGTCAATACATTACACAATCATTTCAAAGAAATTAGAATGGCTTCTAAGAAGTCCAAAGAAGCAACTTCTCTTTATAAATATACCATATATCCTTGGTTAGACAGTGATGAAAAGGAAGTTGAATTCTTGCGACTCTTAACTGATGCAGTCATGTTTGTCATTCTACCAAAAAGTCATGCCCAATGTGACATTGTTCGTCATTTGCTGAGAGAAGTCCTTACTGTGTCTGTTTTTAAACCTTCTATTGATATGCTGTGTGATCCTGAATACCTGAATGATAAATTACTGGGATACATGGATTATCGAGCTAAGTTATGTGAGGACACCAGAAAATCTTACTCTTATGCTGCTACATATGAGGATTTTGTGAAAATGATACAGAGCTGTGATGATATTGAATACCTTAAACACATCAGGTACAACATAATCACAGAAATTATGCAAGCCACAACAATCAATAACTGGAAGAAATCTCAAGGCATCAGTACAGATAAAGCTAGTGCACCAAAAAGTATGTCCAAAGGAGACTTGTTAAAAGCTAGAAATTTGAAAACCTACATCAATCAGCTGACTGTTGCCAAGTCCACTTGTGAAAAACGGATCCATGCTCTCGGAGGGCCTGATTATAAATATTACTCAGAAGAACAATCAAAGGAAGAATCTAAATCTTCACATCCAGGACAGAAGGTATTATCTTACAAAGCCATTATGGATGTTCCTGCTGCCAAGCTATTCTTTTTGAAGTTTTTGAAACGAAATAATCAGCATTTCTTGCTTGAGTTTTGGAATTGTGTGGAAGATCTAAAACAGGGTAACAAAAGCCAGCACCATGATAAAGCCCGTGAGATCTTTGAGCAGTACATCAACAGTAATAGCAGTGCAGTGCATGTAGAACGTTCTACGCTTAAAGGAATGGAGTCCTTTATGCTGGGTGATACAGGACCAGATGCTTTTTATGAAGCTCAAAACCAAGTCTATCTTATATTAGAAGAGCAACATTACCCAACTTTTATTGTAAGTGACGTTTACCATGAGTACATCTCGGCTCTTGAAAGTGAGCCACTGAAAAAGTCACCTTCTATAGAAGAAGACTTTTTAGAAGGTAAAGAAACACTAGGAGCCTTTGAAGTTGTAGAAGATGTTTTGTTTGCTGATCAATCATATTCAATACAGAAAAGGCTGGAAAAGTTAGATGAGAAGATTCTGAATAAAACCCAGGCTTTGACTACTATAAAAAATTCCACCAAAATTGATGTCAAGCTGAAAAAGGTACAAGAAGATCTTGAGAAAGAAGTGGAAAATCTTCAGACGGAAAGAAGACAACTGGGTGCTTATGTGGAAAGAACTGAACTTTGGTGGGAAAATCAAGGAAAATGGAAAGCTCATGTCTACAATGCAGAGATTGTCTCTGATGGTGACAAAGTGACACCCTACTTTGTGATTGTTGTACATGTTGCTCCTGTAAAAGACCCTGAAACTCTGGGTGGTTCACAGGGTTGGGTTATTTCTCGTACATTGGCTGACTTTGCTGCTCTGCATGAGAAACTCATCCAAATCGGTCCTTGGTTGAAGAAAAAAGAACTACCAAATACCACATTAATGTGGTTTAAAGTCATTGATGCTACATTCCTGGAAAAGGCTAAAGAGACTCTTGAAAACTATCTCACTATTGTGATGAAGGATGACCGAATGGCTCAGAGTGAGGCCTTGTTTGCATTCTTGTCTCCAGCCCCAGACTTCCTCAGTCAGCAATCTCAGGGCCGGCGAAACTGGAATTTCTCTCTTGGAAAACTTTTTCGAGGGCTCCCAGTGGGTAACACGGACAATGAAAGCGATGATGAACTGCTGTTTGCAAACTGTGAAGGTGGAAAAGAGGAGCAAAGTCGAGATTCCATTGCTGAATCTTTATATCATTTGATCAATGAAGTGTTTGAACTGCGGGGTCTTTTCAAATGGCTGAGAAAGAGTTTCATTATGTTTGTTGAAGTAACATTTGGCAGATCAATAAACAGGCAACTTCGTGTGACTATTGACTGGATCTTCTCTGAATCTATGCTAATTTATTATATTCAAACATTCCAAGAATCAATGTGGCCAAATGGAGTCTTGGCTGAACCTTCATTGCCAAAAACAGAAGAGGAGAAAATGAAAAGTCGAATAGAAGCAAAAGAGAAACTTCTCAAACATTTACCTGATGCTGTGAAAACCCTTGTAGGTGACGACAATGCCAGGCAAGGAGCCATCAAAATGTTTGAGGTTTTACAAGACAGCCGCTTAAACAAACAACTATTTTATTCTGTTATCCTCTCTGCTCTTAACTGCCTTGTGCTTATGCAGTGTTTAATCACATTGCAGTATAATTCCAACAGCGAATACTCC

Transcript

pred2_49517.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00615	RGS	Regulator of G protein signaling domain	Domain	Interproscan
PF00787	PX	PX domain	Domain	Interproscan
PF02194	PXA	PXA domain	Family	Interproscan
PF06246	Isy1	Isy1-like splicing family	Family	Interproscan
PF08628	Nexin_C	Sorting nexin C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001683	Domain	Phox homology	Interproscan
IPR003114	Domain	Phox-associated domain	Interproscan
IPR009360	Family	Pre-mRNA-splicing factor Isy1	Interproscan
IPR013937	Domain	Sorting nexin, C-terminal	Interproscan
IPR016137	Domain	RGS domain	Interproscan
IPR036305	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR044926	Homologous_superfamily	RGS, subdomain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22775	SORTING NEXIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000350	Biological Process	generation of catalytic spliceosome for second transesterification step	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-