Gene detail

Detailed information of pred2_49230.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_49230.1	DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL	Sc3x4tf_274	897451	833687	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_49230.1

ATGGATTTTGCAGAAAATTCTTCATTTATAGTACAAGATGCAGCTCAAGGTTTCCATTGGGAAAACAGTCAAGCAACACTGCATCCATTTAAATTGATTGGAGTTCTAAAAGAAAACCTTCAAACGATAAAGCATATTTACTACTTCAGTGATGGTTCAGAAGATTTTGACGGCATAACAGCTGGATGGATTTTATTTGCTACTAATCATGGAAAATCAGCTTGTGATGGTGTAGGAGGTACAGTAAAGAGATTGGCCGCTCGTGCAAGCTTACAGAGACCAATAACTGGTGGCATATACAACAAAATGACTCGACATTATTCCGTTGGGCCACGGATAAGTTCCACAAAACGAATACTGAAATTGCGGAAAAAGACCCTCCTCAAAGATATGGGGGTTCATTCAGAACTCGCCCAGTTGCTGAATGCTCGCCTCAGTCAACTGAAGGGCTCCAGCGATGAATTTCACATCTTGCGAACTGCTCATCATGAAGGCAGTTTTGAAGATCGATGGCCCCGGATTGGCAACGGGAGTCTCTTCGAACACCCCAGTATCATTGAGAGGTTTGCCGAGGTTGTTCCTCCCAATGACATGACCCCAGCATTTGTAGAGAAGCTAATGGCCACCCAGGGTAGAGTGTCTGATCTGATCAAGGACACTCGGCAATCGTGGCTGGATGATGTGAAATCCTTTTCAACGCAGATGAAAAGCGTCAGCACTCAGGAAAACGTGGACTTGTCACTGGATGTGCAGTCAACATCTTCATTTGCCGAAAGTGGTCCTGTACAAAAGATATCCGATTCCATTCAGGCAACTTTAGTGCCGGTCCCTCGTCACCCACAACGACAACCAAAAAAAAAGCAAGAACGTCCTCCGTCACAAGTAGAAGAATCTCAAGCCGAAATTGAGTCTGAGATGAATTTGAATTATGGGCTCGAGCCGTTGGTCAAAGGAGTTGAAGGCATCGGTCTCGATTCAGAACTGTACGGAACTGACCACACCGGTCAAGATGATTCCAGTGAGGCAATGTCGTTCTACGTGGATGATCGGAAGGAACAAAAACTGACATTCGGTCCAAAAGGAAAGGCCAAAGTATCTACCAAGAAGTCGGTGACTCGATTGAAAGAACGTGATGGCCAGAAACCAAGGCGTGATCTTGTAAAGCTGAATGCTCTCTTCAACAATGACCTGGAGGCGTACATCAATGCCTGTATTTTCACAGGAATGATTGACAAGGCAATGTCAACCCTGAAGTTTTACTCCTACATCCACCTGCAGACACCAGAAGATCCAACTTATCGTGTCAATAATATCGCCGTCTACAGTTACTTGATGCATGCAACTGCAAAAAGGGTAAGTTTCCAAGATCTGATATCTGTTTTTCTAGAACTTCATACGTTGGGCCGGTTTGGTCCTTTACGGGAATTATTCCAGCAGGTAATGAAGAACGGTCTCAAGCCTTCGTTGCAATGTTACGCTGCGTGTCTGGAGTGCCTTGCCCGACAGGATGTCATGGATATTGAACTTGGACAACATATCATCTCGGATCTCCGTAGAGACGGTTTCAGAGAAGAAGACATCTTCAATGCGTGTATTTTCAGAAGAGACGAAAGACAATATGTGTTGAAGGCCCTGAAGACAATTGACCCTCACTTTGAACCTCGTCCTTTAGACACTGAAATGGACTACAGTGGACCTCTGCTTGAAAAATTGAACTACCCTCTACCTTCAGACCAGATGGTGGAAGTGAACCCATACATTGGTGTGGTGGACAATGACCATCTTTTGAGACAGATGGAAAAACAAAACGATTGGGAACAACAATACCATTTGAACATCAAATCAATCATCAAGCAGAAGACTGACAAACCCAAAATGGAAGCAACAAAATTAGCCACCGACTCCGAAACGTTCAGTCCGAGTCTTGGTTTCTTATGGCAAAGAATGGGCAACCGAGTTTATTACAAGTACCTCATCCAGGACAAGGTCGATTCGCTGGTAGCCAAAAAGATGACCCGTTTGTATCGTGACTACATTGAATTATACAATGATCCAAACCTGGAAATTCTGAATCATCGAGTCCTGTGGCAGCAACTGCAGGTGAAACATATTGATGGGCCAACTTTGGTAACCAAATTGATTCGACTCCCAGACTCTGTGAGTAAAACAAACAACAACGTGGCGGTGCCAATCGGAAGTCTTAATGCAGTCTTTGATGGTCTCAATACACTCGGTGCTTGTCCTTGGATCATTAATAAACCTATCTTGGATCGGATCATCGAAGTCTTCAACAACAGAGGAAACAAGAACCTGGACATTCCTCCCCCGGCTACAGAGTGTCCGCCGCTACCAAAAATTTCAAATGACATGACAGGCCAGCAGCGGTCAAGATCCCAACGGATGCGGGTCAAGTTGAAGCAGCAGAAGGCCGAAATGCACAGCCTCTGGTGTAATGAACTTTACAAACTGTCTATTGCCAATCATTTCCGTGATGAGGTTTTTTGGTTCCCTCACAACATGGATTTCCGGGGACGAACTTATCCTTGTCCACCACACTTTAATCATCTTGGAAGCGATGTGACTCGAAGTATCTTGCTTTTTGCCAAGGGTAAAAAACTTGGGCCTCAGGGTTTGGATTGGCTCAAGGTTCATCTGATCAATCTTACTGGCTTTAAGAAACGATCCTCCAATGCCGAAAGACTGTCCTTTGCCAATGAGAACATGGACAACATTCTGGACTCTGCTGACCACCCAATGGACGGTTGTGGCTGGTGGCAGACTTCCGATGAGCCATGGCAGACCCTTGCTTGTTGTATGGAGATTGCCAACGCAGTCAGATCGAACGACCCAGCAGAACATGTCAGTCATTTTCCTGTGCATCAGGATGGTTCTTGTAATGGTCTGCAACATTATGCAGCCCTGGGCCGAGACCAGGCAGGGGCTGAATCTGTTAATCTGAGCCCCTCAGAACGGCCACAGGATGTCTACAGTGATGTATGTGAGCTGGTTGAACGTGTAAGAGCTAAAGATGCTGAAAATGGACTTTTGGTTGCTCAGAAATTGGAAGGTTTTGTCAAGAGAAAGGTAATAAAGCAGACTGTGATGACCACTGTGTATGGGGTGACTCGATACGGTGCCAAGTACCAAATTCTAAAACAACTCAAAGACTTGCCTGATTTTGATTCCGAATTCATTTGGGCGGCTTGTGTCTACCTCACAGACAAGACCTTCTTCTGTTTAGCAGAAATGTTCACGGCAACCAAAGACATCCAGATGTGGCTCACGTTTTGTGCCCACCACATATCGACCCAGAGCCTACGTCCAGTGGACTGGATTACACCTCTTGGACTGCCTGTAGTCCAACCCTATCATAAAACGAGTACACTGCAGAGGTGGGGAGTCTCCTTCACAAACACGACATCCACTTTTGAATTTGCCGAGAACAATTTGTTGCGTTACACAGTCAACCAATCCTTGAAGATCTCTCGAATCATCTTCTCAAAAGGTTCTGTCCAACTTCAAAAGCCAGTGGTCTTGCTATCTCCGTTGAAACTGACAATGATGGTGGTCAAAGTCTCCCCTTGCTGCCAGTTCTATGATTCCGGCAGCATCCTCATCAAACTGGTGCCACTCACTGCGCTGTCTCGCCAGAGGCCATTTGATCCGCCATTGCTGAAAGACTGCTTGGAGCCGAGCACATGGACGTTCTGGGCTCTGTGGGGTGTTTCCAGGTTGGGCACCTCCTGCATCTCACCAGGAGTAGGTCCAGTGCGCTGTGCCACTCTCCCATACACTGAGCATTTCATT

Transcript

pred2_49230.1

atggattttgcagaaaattcttcatttatagtacaagatgcagctcaaggtttccattgggAAAACAGTCAAGCAACACTGCATCCATTTAAATTGATTGGAGTTCTAAAAGAAAACCTTCAAACGATAAAGCATATTTACTACTtcagtgatggttcaGAAGATTTTGACGGCATAACAGCTGGATGGATTTTATTTGCTACTAATCATGGAAAATCAGCTTGTGATGGTGTAGGAGGTACAGTAAAgagattggccgctcgtgcaagcttacagAGACCAATAACTGGTGGCATATACAACAAAATGACTCGACATTATTCCGTTGGGCCACGGATAAGTTCCACAAAACGAATACTGAAATTGCGGAAAAAGACCCTCCTCAAAGATATGGGGGTTCATTCAGAACTCGCCCAGTTGCTGAATGCTCGCCTCAGTCAACTGAAGGGCTCCAGCGATGAATTTCACATCTTGCGAACTGCTCATCATGAAGGCAGTTTTGAAGATCGATGGCCCCGGATTGGCAACGGGAGTCTCTTCGAACACCCCAGTATCATTGAGAGGTTTGCCGAGGTTGTTCCTCCCAATGACATGACCCCAGCATTTGTAGAGAAGCTAATGGCCACCCAGGGTAGAGTGTCTGATCTGATCAAGGACACTCGGCAATCGTGGCTGGATGATGTGAAATCCTTTTCAACGCAGATGAAAAGCGTCAGCACTCAGGAAAACGTGGACTTGTCACTGGATGTGCAGTCAACATCTTCATTTGCCGAAAGTGGTCCTGTACAAAAGATATCCGATTCCATTCAGGCAACTTTAGTGCCGGTCCCTCGTCACCCACAACGACAACCAAAAAAAAAGCAAGAACGTCCTCCGTCACAAGTAGAAGAATCTCAAGCCGAAATTGAGTCTGAGATGAATTTGAATTATGGGCTCGAGCCGTTGGTCAAAGGAGTTGAAGGCATCGGTCTCGATTCAGAACTGTACGGAACTGACCACACCGGTCAAGATGATTCCAGTGAGGCAATGTCGTTCTACGTGGATGATCGGAAGGAACAAAAACTGACATTCGGTCCAAAAGGAAAGGCCAAAGTATCTACCAAGAAGTCGGTGACTCGATTGAAAGAACGTGATGGCCAGAAACCAAGGCGTGATCTTGTAAAGCTGAATGCTCTCTTCAACAATGACCTGGAGGCGTACATCAATGCCTGTATTTTCACAGGAATGATTGACAAGGCAATGTCAACCCTGAAGTTTTACTCCTACATCCACCTGCAGACACCAGAAGATCCAACTTATCGTGTCAATAATATCGCCGTCTACAGTTACTTGATGCATGCAACTGCAAAAAGGGTAAGTTTCCAAGATCTGATATCTGTTTTTCTAGAACTTCATACGTTGGGCCGGTTTGGTCCTTTACGGGAATTATTCCAGCAGGTAATGAAGAACGGTCTCAAGCCTTCGTTGCAATGTTACGCTGCGTGTCTGGAGTGCCTTGCCCGACAGGATGTCATGGATATTGAACTTGGACAACATATCATCTCGGATCTCCGTAGAGACGGTTTCAGAGAAGAAGACATCTTCAATGCGTGTATTTTCAGAAGAGACGAAAGACAATATGTGTTGAAGGCCCTGAAGACAATTGACCCTCACTTTGAACCTCGTCCTTTAGACACTGAAATGGACTACAGTGGACCTCTGCTTGAAAAATTGAACTACCCTCTACCTTCAGACCAGATGGTGGAAGTGAACCCATACATTGGTGTGGTGGACAATGACCATCTTTTGAGACAGATGGAAAAACAAAACGATTGGGAACAACAATACCATTTGAACATCAAATCAATCATCAAGCAGAAGACTGACAAACCCAAAATGGAAGCAACAAAATTAGCCACCGACTCCGAAACGTTCAGTCCGAGTCTTGGTTTCTTATGGCAAAGAATGGGCAACCGAGTTTATTACAAGTACCTCATCCAGGACAAGGTCGATTCGCTGGTAGCCAAAAAGATGACCCGTTTGTATCGTGACTACATTGAATTATACAATGATCCAAACCTGGAAATTCTGAATCATCGAGTCCTGTGGCAGCAACTGCAGGTGAAACATATTGATGGGCCAACTTTGGTAACCAAATTGATTCGACTCCCAGACTCTGTGAGTAAAACAAACAACAACGTGGCGGTGCCAATCGGAAGTCTTAATGCAGTCTTTGATGGTCTCAATACACTCGGTGCTTGTCCTTGGATCATTAATAAACCTATCTTGGATCGGATCATCGAAGTCTTCAACAACAGAGGAAACAAGAACCTGGACATTCCTCCCCCGGCTACAGAGTGTCCGCCGCTACCAAAAATTTCAAATGACATGACAGGCCAGCAGCGGTCAAGATCCCAACGGATGCGGGTCAAGTTGAAGCAGCAGAAGGCCGAAATGCACAGCCTCTGGTGTAATGAACTTTACAAACTGTCTATTGCCAATCATTTCCGTGATGAGGTTTTTTGGTTCCCTCACAACATGGATTTCCGGGGACGAACTTATCCTTGTCCACCACACTTTAATCATCTTGGAAGCGATGTGACTCGAAGTATCTTGCTTTTTGCCAAGGGTAAAAAACTTGGGCCTCAGGGTTTGGATTGGCTCAAGGTTCATCTGATCAATCTTACTGGCTTTAAGAAACGATCCTCCAATGCCGAAAGACTGTCCTTTGCCAATGAGAACATGGACAACATTCTGGACTCTGCTGACCACCCAATGGACGGTTGTGGCTGGTGGCAGACTTCCGATGAGCCATGGCAGACCCTTGCTTGTTGTATGGAGATTGCCAACGCAGTCAGATCGAACGACCCAGCAGAACATGTCAGTCATTTTCCTGTGCATCAGGATGGTTCTTGTAATGGTCTGCAACATTATGCAGCCCTGGGCCGAGACCAGGCAGGGGCTGAATCTGTTAATCTGAGCCCCTCAGAACGGCCACAGGATGTCTACAGTGATGTATGTGAGCTGGTTGAACGTGTAAGAGCTAAAGATGCTGAAAATGGACTTTTGGTTGCTCAGAAATTGGAAGGTTTTGTCAAGAGAAAGGTAATAAAGCAGACTGTGATGACCACTGTGTATGGGGTGACTCGATACGGTGCCAAGTACCAAATTCTAAAACAACTCAAAGACTTGCCTGATTTTGATTCCGAATTCATTTGGGCGGCTTGTGTCTACCTCACAGACAAGACCTTCTTCTGTTTAGCAGAAATGTTCACGGCAACCAAAGACATCCAGATGTGGCTCACGTTTTGTGCCCACCACATATCGACCCAGAGCCTACGTCCAGTGGACTGGATTACACCTCTTGGACTGCCTGTAGTCCAACCCTATCATAAAACGAGTACACTGCAGAGGTGGGGAGTCTCCTTCACAAACACGACATCCACTTTTGAATTTGCCGAGAACAATTTGTTGCGTTACACAGTCAACCAATCCTTGAAGATCTCTCGAATCATCTTCTCAAAAGGTTCTGTCCAACTTCAAAAGCCAGTGGTCTTGCTATCTCCGTTGAAACTGACAATGATGGTGGTCAAAGTCTCCCCTTGCTGCCAGTTCTATGATTCCggcagcatcctCATCAAACTGGTGCCACTCACTGCGCTGTCTCGCCAGAGGCCATTTGATCCGCCATTGCTGAAAGACTGCTTGGAGCCGAGCACATGGACGTTCTGGGCTCTGTGGGGTGTTTCCAGGTTGGGCACCTCCTGCATCTCACCAGGAGTAGGTCCAGTGCGCTGTGCCACTCTCCCATACACTGAGCATTTCATTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00940	RNA_pol	DNA-dependent RNA polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002092	Family	DNA-directed RNA polymerase, phage-type	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR046950	Domain	DNA-directed RNA polymerase, C-terminal domain, phage-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10102	DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001018	Molecular Function	mitochondrial promoter sequence-specific DNA binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0006390	Biological Process	mitochondrial transcription	Interproscan
GO:0034245	Cellular Component	mitochondrial DNA-directed RNA polymerase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-