Gene detail

Detailed information of pred2_49187.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_49187.1	SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED	Sc3x4tf_330	3726866	3681007	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_49187.1

ATGCAAGTATTACACTGTATTCGCACAAGTTCCTACCTGACCATTAAAATTCAGCTAAATTCTGCCCCAAAAGAGTTGAAAGCCCAACTTCCTGTTCTTAAGAAGGCTGTGGTTGATGAGCAGACAATCCAGGAAAAACTGAAGGTTTCCATTAAGGAAAAGGATCAGTGTGTCCGAAAATATGAACAGGAAGTGGACAGCCTCAACTTTCGCAACCAGCAACTGGCCAAAAGAGTCCTCTTCTTACAGGAAGAGTTGGAGCAAGAGTCAGTTAAGAAAAAAAGTAAGGGTAAAAGTGGAGGTGGCAGTGCTGATGCTGGCACCCCAACATCAGAGAAGCCCCTGACTCACTTACTGGAGCACAGTGTCATTGGAGAAGAATTACAAAGTAAGATTGAAGAGAATGCAAGGCTCCATAAGCAGGTATTTGAAAGTCAGCAAGAATATGACACCCAACTACGGGAACTTCAAGAACGTCTTTCTAAATATGAGAAAGAGTCAAACCAACACAATGAAGTCTTAAATCTTACTTTACAGAAAGGCAAATCAGAGGTTGACCGGCTACAACAAGATAAGGCAATGATGGAAATTAAATTACAAAAACAGCAAAGCCAAATTAAAGAATACAAGTCACAAGTTGACAGAATTGAAGACCACCTTCATGATGTTCAGGAACACCTCACAGAAAAATTGAAGTCTGCAACTAAGATCATTGAAAACAACCTTCCCTTTATTGATTCAAGTGTGCCTGAGTTTAACAGCCTGAATGTCCCCACCCATGACAGGAAGTACCAGCTACGGGCCCGTGAATTGATGTCCCAAGCGGTGGGATTGACCAGTGCATTTACACTTGCCTTCTCCAACTTCTGTACATATTCTGAGCAGCGTGCCCGGAATATGTGCTCTGCAGATGGTAGCCAGGATCCTCTCACTATTATCAACACTAGGTATGCCAAACATCTGTTTGAAAATGCTTCCTACTTTAAAGGAGTTGAAGAAACCATGAAGACCTTTAATGAAGAGGTTGGTGAGAACTGCTTCACAACTTTGGAGACAGCCACTGGCCTCCAGCCCTTTGCTGCCAAGTTCCGTCAGCTTGTGACTTACCTGAATAAACTGCTCCCCTATCAACTTGAAAGCCTTCACCAGGAATGTGCCTTGTCAACGTGCACGACAATGTTAGAAGCAAAGAATTTAGATTTATGTAAATCTTTCAAAAGGCTGAATTCAGTTTTCAACCGATTGCAGACCTACATTAATATCCTGGGAGCCCAAAGTCATAAATCTTGCTCTCATTCAAAGAAAAACCACCAAAGATTCTTTGCTGAACTCGGTTCTGGTATTACAAGTCTACATGAAGCTGTCAAAGATGTCTCTAAACATTTTAATTCCAAAATTTCAATGGAACATCAGTTGCCAACTGCCTCACAAAAGCTGAAAACCACTGATGAATGCATTGTGTCTTCCCTTGTTTCTTTGGTTACATGTACAGGAAAATTGTCTGCTTTTCTTGCTGGAAACCAAGACTTCTTTGGACAAAGAGCAAATTACCGTACGCGTGGAAGCAGTTTTAGCAGCCCTTTAAGTGCTGAAGAGGATCGCACAAATCCCATTGTGGCCCAATATAGGCAGAAGGCTAGTGACTACTTGTCCAGAATACAAGAGCCTCAGCCAGGATCTGTACCTTACCATATTGCTCTAGAGAACAGAAAATTGCTTTTAAGCTCTACTGAAAGTAAGGAAGGCCTTTCTAAACAGATTCAGACATTTCAGCAGAAGATAAGCAAACTAGAGCAACACAAAGAGCATTACATGCTGGAAATTCAGCTCCTCAAGATGAAGTGTGAAAATGAAACACAGAAAGTAAAACAATTGGAAAAGACTATTGAGGAGACAAAGAAGAACTTAGACAGCAATTCCTCACCAGAAAACCTGATGGATGGAACTGTGTCAAGCACAGCTGCTGCTACTACTGGAGAAATAGAAGATACCAGTTCCAAGAGTTATGTCCCCTCTGAATCAAAAGGAGACAGTGTATCGGCGGCTGATGCAGACACCCGTGAACAGCTCATCAAAGATCACCTGACAAACAGAATAAACCAACTCACATTGAGTCTTCAACTGGCTGAGAGCAAAGCTATTAGCTTCCATGCAGAGGTCCGATCTTTACACAAGAGACTTGCAATTGCTGAACAGAGTAAAGAGTCAGCCCTTGAAGAACTGAAGCAGGCTTCCTTATCACAGGCTCAGCTCAAAGATGAACTGACCACCACAACCCGCAGTTATGAAGGTCAGCTAAGCATGATGAGTGAACATTTGGCCAGTATGAATGAAAAATTGACTAGTCAAAAAGATGAGATTGATGAATTAACAATGCAGCTCTCCATGGTTAAGGGACAGAAGAAATCAAAAAAG

Transcript

pred2_49187.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10205	KLRAQ	Predicted coiled-coil domain-containing protein	Coiled-coil	Interproscan
PF10212	PPP1R21_helical	Protein phosphatase 1 regulatory subunit 21, six-helix bundle	Domain	Interproscan
PF21636	PPP1R21_C	Protein phosphatase 1 regulatory subunit 21, C-terminal	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019343	Domain	Protein phosphatase 1 regulatory subunit 21, N-terminal	Interproscan
IPR019348	Domain	Protein phosphatase 1 regulatory subunit 21, six-helix bundle	Interproscan
IPR040024	Family	Protein phosphatase 1 regulatory subunit 21	Interproscan
IPR049372	Domain	Protein phosphatase 1 regulatory subunit 21, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21448	SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-