Gene detail

Detailed information of pred2_38142.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_38142.1	COATOMER SUBUNIT DELTA	Sc3x4tf_3305	25866	5899	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_38142.1

ATGGCAACATGTCTCATGGCTATGAATATAATTTTTCACCGCAGATACTTTTTTCTGTTGCACCAGTGTGATTTGGTTCTCCTGGCAGCAGCTGTGTGTAATCGAACTGGGAAAGCTATCATTTCCCGCCAGTTTGTTGAAATGACCCGAGCTCGGATCGAAGGGCTTTTGGCTGCATTTCCCAAATTAATGAGTGGTGGAAAGCAACACACTTTTGTAGAAACAGAAAGTGTTCGTTATGTCTACCAACCCCTTGAAAAACTGTACATGCTTCTCATCACGACCAAAGCCAGTAACATTCTTGAAGATTTGGAAACTCTTAGACTTTTTGCCAAAGTTATTCCTGAATATTGTCGTAATATGGATGAGAGTGAGATAATTGATCAAGCCTTTTCTCTCATCTTTGCCTTTGATGAAATTATTGCTCTTGGTTACAGAGAAAATGTAAATATTGCCCAAATTCGAACATTCACTGAAATGGATTCACATGAAGAACGTGTGTTCATGGCTACCCAAGAAAAAGAAGCTCGGGACCACATGCTGAAGAAAGCAGAAGAGCTGCGCAAGATGAAGACCAAAGGGGGCACAGGAAGTGGTGCTTGGTCTCCCGGTTTTGGTGGTGGTGGGGGTGGTGGCAGCAACAATTCTGTTGGACGACTTGATACTCCTGTTATTGATACTACGCATAATGAGCCTGTCAAACCATATACAACCACAAGGCTGCATGTTGTTGGTAGTGCAAACGACGCACAAACAGCTGCAAACAATTTAGATCAGCTGGAGACAGGGTGGGCCAAAACATTCACACCCAACAGTAACATACCAGAAACTTTGTTGGAATCAAGCACAGCAGCAGATTTTCTCCAAATATTTTTTTATAAAACATTCTGGCAGAATCTTTATGTCAAAACAAACAGGCTAGCTGAACATCCACATCTGGATGAAGACATGATACCAATTAAGAACTGCCTCTTCATCAAGAAGTACATCAAAGATAAGCAAGTAAAGTTTGGCATAAAAAGTTTTATGCTATGTGAGGGGCAGACTGGCTACATTATGGACACTGAGGTGTATACTGGAAGAAAGAAAATGTCTCCCTCCTCATCTGGGTGTAGTTGGAAATGTTGTAAAGAGTCTCTTGACAACAAGGGTCACATTTCAAATTACCAAAACCCAGCAGATGCAGTCGCAGCAAATAGAAGAAACAAGGATGGTACACTGACACAAATCCAAATACTAAACCTGGTCAAATACAACCAGCCTTCAACATTTTCATTGATCAACTCTTGCCTGTCACTGGTTGGATACTTTCGATCTTGTGCTGTTCAACACCAAGCGAGAGAACATGATTTGGCTCAACACCTTCAGAATGTTGGCTTACATTTCCCTGAAATTCCTGAGAATGTCTCACCCAAAAATACTTGTGTAGTTTGCTATCTGTGCTGTTGCCCCCTTTTTCTTTCTAGCAAACCATCTGGTCTTAGCAAAGCTATGAAACTTGGCAGCAAAACCAAGGATGTAGATACTTTTGTGGATCAACTCAAGTCTGAAGGAGAAAATGTCACATCACCCATGTCTGCTCCATCTACAGTCAGCAAGATGTCCACGCCAGCCTTGAATCAAGAAGGTGTCCACTTGCGAGTTGAAGAGAAAATTGTAGTCCAAGCTGGTCGTGATGGAGGCTTACAAAACCTTGAGGTGTTTGGTCTAGTCAAATTGAAGGTATCAGATGAAAAATATGGAAAGATCAAAGTTGGTATCCTTAACAATGACAACAAAGGTGTACAAATTCAGACTCACCCCAACATTGACAAAAAATTATTCAATGCTTCTTCATATATTGCCCTCAAGAACCCAGAAAAGCCATTCCCATTGCACCAAGAAATCGGTGTGCTCAAATGGCGTTTTCAAACTTTAGATGAAAGTTATATTCCTTTGTCGATCAATTGCTGGCCTTCAGATGCTGGGGCTACATGCGATGTGAACATTGAATACGAGCTAGAGCAACCTACATTAGAACTCAATGATGTTGTGATCACTATACCCATGCCTACCGGCCATGTTGGGCCTATTGTTACCGACTGTGATGGAGAATACACATATGACCGAAGCAAGAACCATATGATTTGGAGCCTGCCTGTCATTGATGCCTCCAATAAATGTGGAAGCCTTGAATTTAGCATTCCTGGACACGCAGAGGATTTCTTCCCTGTCTCTGTTTCTTTTGTCTCTGTCAAGTCTTATTGTGACATTCAGGTGACCGAAGTAGTGACTACAGGAGATGTACCTGTCAAGTATTCATCTGAAGTTTTCTTCTATGTGGAAAAATATGAAATTGTG

Transcript

pred2_38142.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan
PF01217	Clat_adaptor_s	Clathrin adaptor complex small chain	Domain	Interproscan
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011012	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR022775	Domain	AP complex, mu/sigma subunit	Interproscan
IPR027059	Family	Coatomer delta subunit	Interproscan
IPR028565	Domain	Mu homology domain	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR036168	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10121	COATOMER SUBUNIT DELTA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0030126	Cellular Component	COPI vesicle coat	Interproscan
GO:0051645	Biological Process	Golgi localization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-