Gene detail

Detailed information of pred2_38134.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_38134.1	PROTEIN CBG26694	Sc3x4tf_5115	45870	49854	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_38134.1

ATGGACTGCCTTGAAAATCTTTACAAACCCACATGTGGTAAATGTGGGCGAAATGGTCATGTGGGACGATTTTGTTCCAACCCTGGGTGGAATAAAGGACTCCCCAAAATGAGTAGGCTGCCCACCAAGCCACAGTTAAGAGGGAGGTTGGCCCAAGTAAAAGATAGAGTGTTGAGCTGTTGCACGTGTGGACAGACTGGTCATTTCTCTGCCCGCTGTACCATAAAGAGTTGCTGGAAATGTGGGGAAAAGGGGCATTTCAAAAGGAATTGCCCATTGGGAAATAGAGAGGGCTCCCGGAAAAATAAAACCCAAACTAATGGACAGAGGGTCCAGGCTCTAATAGACACTGGTGCATATGTGTCTATGATTAAAACCAACAAATATGGAAAGTTAAGGATAAAAGGGAGATTGAGAAGGCCCGACCTAACTATTAGTAAAGCAGATGGAAAAGAAATGAGAATTTGGGGAATTGTTTGGCTCCCAGTGAAGGTAGGAAGGGTTTGTAATATACAAAGGTTGTATGTAGCCCCTGATTTATATAATACAATGATCCTGGGGGAGGATTGGCTAACGAGCAATAAGGCTCAAGTAAGATTTAGCCCCGCAATATTAAAAATGGGTGGAGTGGAGGTGCCGCTGGGAACCAGGTCTGGCGGACCATCCTCAGTTGTTTCAGACATTGAGGTGACGCTGATAGACAAGTACCTTCCAGAGAAGGAAGAAGTAGCGCAGTTGGAAGTGGTAGTACAGGGAGATGGGTCAGATGCGATACCCATATTGATAGCAAATACTGCAAATAAAACCGTGAAAATTCAAAAGGGAGAGGAGGTAGAGAAAACACTACCGATAAGAAAAATCAGCCAAATCCGGTATGATCAGACAGATAAGGGCAGGTACGCAAAGGCTCGGATCACCAAAAATCGTGGTGTGCCAAAGACACCAGAGGAACACTTCCAACACCTGCGGGAAGTGTTCGACCGGTTGAGGAAACACGGTCTAAAATTAAAACTGCCGAAATGTCAGTTTTTGAAAAAGGAAACAAAGTACCTGGGCTTCGTAATCAATGAGGAGGGTATTAAGCCTGACACGGATAAAGTTGAGGTAATAAGGGCAATGCCTAAACCCAAGACCATAAGAGAAAAAATTAGTACGGACATATCTGGTCCATATGGGGAAACTCCCCGAGGAAACTTGTACATACTGAGTTTTGCAGATTGGCTGACAAATTGGCCAGAGGCAAATGCGGTGCCAGACTTGATGCTGACAGAGGTGTTCCCGAGATATGGGGCCCTGTTGCAGTTGGTCACTGACAATGGGCCTGAGAATGTGAATATAATCATGAAGGAGACTTTATCCAGTATGAATGTGACACACATTACTACTTCACCCACCCATCCCCAGAGTAATGCCAAGGTGGAGAGATTCCACAGGTTCTTGGGAGACATATTGGCCAAGCTAACTGAGGGCAATACAGCAAATTGCGATCTCAGTGAGATTCTCTATCAACGAGACATCACAAGTGATATGGTCCTGCCAGTGGATAACCTATTAAAGCCCTGGAGAAAATACATGGGGGAGAACCATCATAAGATGATATTAGAACAGCAGCATAAGGTGTTCGTGCAGGCCATAGGAAGGATTTGGCAGACACAAAAGAAAAGGAATGAAAGTGTGAATAAGGGCTGGATGGAGGTAGAATTGAGTGTGGGGGACCTAAGAGAAGAAAAGTTGGATCAAAAGTGGAAGCCCTATTATAGAACAGTGGAACAAATAGGGCCGGTATCATATATAGTCTGGGACCAGATGTCGGGTAAAATTAAAAAGGCTCACGCTAATGACTTAAAGTTAGCTGAGATGGATGGTTGGGAGAGACCCATACCGAAAGAGAGAAAGAAAAAAGCTAGAAGGGTTACTCTGGTGGAACCAGAGGAAATGGAAACAGAATCGCAGAATGAAGAAGAGCCGACCATACTGGGGGGCCCTCAGCAGAGGGGCGAGAAGAGTGGGACTCGGAAAATGAAGTCCATATCCCTGATCAAAAGTCTCCAGGAGGAGTCTAGTGAGTGGGGGGAAGAGGACAAAGTTCCTCTTGCCCAGATTCAGAGGCAGATCCGAGAACCGGATGTGCCAGAAATTAAGTTGGAGTTGCCAATAAAAGAAAGGCACAGGGGTGCAGTCGCCTCCAGAGCCCAA

Transcript

pred2_38134.1

ATGGACTGCCTTGAAAATCTTTACAAACCCACATGTGGTAAATGTGGGCGAAATGGTCATGTGGGACGATTTTGTTCCAACCCTGGGTGGAATAAAGGACTCCCCAAAATGAGTAGGCTGCCCACCAAGCCACAGTTAAGAGGGAGGTTGGCCCAAGTAAAAGATAGAGTGTTGAGCTGTTGCACGTGTGGACAGACTGGTCATTTCTCTGCCCGCTGTACCATAAAGAGTTGCTGGAAATGTGGGGAAAAGGGGCATTtcaaaaggaaTTGCCCATTGGGAAATAGAGAGGGCTCCCGGAAAAATAAAACCCAAACTAATGGACAGAGGGTCCAGGCTCTAATAGACACTGGTGCATATGTGTCTATGATTAAAACCAACAAATATGGAAAGTTAAGGATAAAAgggagattgaGAAGGCCCGACCTAACTATTAGTAAAGCAGATGGAAAAGAAATGAGAATTTGGGGAATTGTTTGGCTCCCAGTGAAGGTAGGAAGGGTTTGTAATATACAAAGGTTGTATGTAGCCCCTGATttatataatacaatgatcctgggggaggattggctaacgagcaataaggctcaagtaagatttagccccgcAATATTAAAAATGGGTGGAGTGGAGGTGCCGCTGGGAACCAGGTCTGGCGGACCATCCTCAGTTGTTTCAGACATTGAGGTGACGCTGATAGACAAGTACCTTCCAGAGAAGGAAGAAGTAGCGCAGTTGGAAGTGGTAGTACAGGGAGATGGGTCAGATGCGATACCCATATTGATAGCAAATACTGCAAATAAAACCGTGAAAATTCAAAAGGGAGAGGAGGTAGAGAAAACACTACCGATAAGAAAAATCAGCCAAATCCGGTATGATCAGACAGATAAGGGCAGGTACGCAAAGGCTCGGATCACCAAAAATCGTGGTGTGCCAAAGACACCAGAGGAACACTTCCAACACCTGCGGGAAGTGTTCGACCGGTTGAGGAAACACGGTCtaaaattaaaaCTGCCGAAATGTCAGTTTTTGAAAAAGGAAACAAAGTACCTGGGCTTCGTAATCAATGAGGAGGGTATTAAGCCTGACACGGATAAAGTTGAGGTAATAAGGGCAATGCCTAAACCCAAGACCATAAGAGAAAAAATTAGTACGGACATATCTGGTCCATATGGggaaactcccCGAGGAAACTTGTACATACTGAGTTTTGCAGATTGGCTGACAAATTGGCCAGAGGCAAATGCGGTGCCAGACTTGATGCTGACAGAGGTGTTCCCGAGATATGGGGCcctgttgcagTTGGTCACTGACAATGGGCCTGAGAATGTGAATATAATCATGAAGGAGACTTTATCCAGTATGAATGTGACACACATTACTACTTCACCCACCCATCCCCAGAGTAATGCCAAGGTGGAGAGATTCCAcaggttcttggGAGACATATTGGCCAAGCTAACTGAGGGCAATACAGCAAATTGCGATCTCAGTGAGATTCTCTATCAACGAGACATCACAAGTGATATGGTCCTGCCAGTGGATAACCTATTAAAGCCCTGGAGAAAATACATGGGGGAGAACCATCATAAGATGATATTAGAACAGCAGCATAAGGTGTTCGTGCAGGCCATAGGAAGGATTTGGCAGACACAAAAGAAAAGGAATGAAAGTGTGAATAAGGGCTGGATGGAGGTAGAATTGAGTGTGGGGGACCTAAGAGAAGAAAAGTTGGATCAAAAGTGGAAGCCCTATTATAGAACAGTGGAACAAATAGGGCCGGTATCATATATAGTCTGGGACCAGATGTCGGGTAAAATTAAAAAGGCTCACGCTAATGACTTAAAGTTAGCTGAGATGGATGGTTGGGAGAGACCCATACCGAAAGAGAGAAAGAAAAAAGCTAGAAGGGTTACTCTggtggaaccaGAGGAAATGGAAACAGAATCGCAGAATGAAGAAGAGCCGACCATACTGGGGGGCCCTCAGCAGAGGGGCGAGAAGAGTGGGACTCGGAAAATGAAGTCCATATCCCTGATCAAAAGTCTCCAGGAGGAGTCTAGTGAGTGGGGGGAAGAGGACAAAGTTCCTCTTGCCCAgattcagaggcAGATCCGAGAACCGGATGTGCCAGAAATTAAGTTGGAGTTGCCAATAAAAGAAAGGCACAGGGGTGCAGTCGCCTCCAGAGCCCAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF13975	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-