Gene detail

Detailed information of pred2_35058.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_35058.1	ORIGIN RECOGNITION COMPLEX SUBUNIT 3	Sc3x4tf_361	1256511	1295207	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_35058.1

ATGAGAGGAGATTTTCTCAATGTCAGTGATAATGAAAATGCTCGACTCTGCTTAAATGGCCACAAAGAAACATGGAATCAAGTTGACCAAAAGTTCCAAGAGCTGCAATCAAACATGGTGAAGAACTTATTTGAAAGTCTGTTTGACTACATTGCATTGTGCCATACTAATTTTAATTTGGATGATGTGACCTCAAACGGAAGAAGAACTGCCCGTGCCCAAGAGATTCCCACTGCCGTTCTCATCACAGGTGTCAATACCCCTGACCATGCTGTGATGTTTACCTCCTTGACTGAAATGCTCCAAAATAACATCAGTCCACTTGTGGCTTCTCTCTCCTCAAAGACCTGCACGACAATCCGGAGCACTATTCGTCAGGTGCTCAACCAGATTTTGAAACAATCCTCATCTTTGCATTTTGAAGAAGAGGAAGATGGAGAGGAGGGTGACCCTAGCAGCAATTCTGAATTCTACACAAAGCAATCTCCTTGCACCCTTAATACCCTAGCCAATTGGTACAGTGACAAGTATAAGAAAGCAGAAGACTCTCCTTCTCCTACAAAGAAAAAATGCTTGACCGATCATCTGTCCTCGTCCAGTTCTACTTATCCAAACATCATAATTGTCTTTGAAGACCTTGAGTCTTTTGCCATCCGTCCACTTCAGGATTTTATCAGCATGTGTAGCTGTTACTTGTCCCAGTTACCAATCATTTTCATTTTTGGTGTGGCAACAACCCTGACGGCTATTCATGGCTCTCTACCTAAAACAGTCTCTTCACTGCTTTGTATGGAAAAATTCCAGGCACCAGCCCCATCTGAATATTTGACCAGGCTTTTAAATGAGGTTGTGATGACAGCAGATGTTCCTTTTAAATTAGGACCAAAAGTGTTTGAATATTTACTTGATACTTTCCTATTTCACAATTTCTCTATTCTCAATTTTATCAAAGGATTTCAGTTCAGCATCTTGGACCACTTCTTCAGCTATCCCTTTAGTTATTTGTGTGTCACTGGAGACAGTTCCAAAAATATTGCTAAAATGCTCAAGTCTGCCAACCCTGAAGAAATTCGGCAGATCCCATCCTTTATGAAGCATGTTGAAATGTGTCCTGCTAGTAAACAAAAGAGTTTGCTGCTGAATGATCAACTTCTAAAAGAAGAAGTTGCAATTCTCCTACAACAAATGCACAACTACCACAAGAATTTCTTCCCCATTTTAACCTGTCTTAACAACTTAGTTGGAAAACTTCCAAAATATCCTCTTGGCAAACAGCTGCGTGAGTTGTATGTATTGTGCCTGAAAAGTACCATTTATGAGTCAGAACCTTATTCAGAAGCAATGAACTTGCTCAAGTTTCTGTCCAAGGATGAATTACAGAGGATTCTCAGCCAGTGCCAAGATAGACTTCTGAAAATGACGCTTCCAGAAGCCCTCTGCTATATTCCTGACAGATTATGCAACTTCTTGGAAAGGCTTGAACAACTGGATGATATAGTGCTTGAAGAATCATCGTCATCTGAAGATGAAGGGAAACCAGCTGAGCAAACAACTTTACCCAAACGAATGAGTCTTCATAACCTGCGGAAAACACTTCAAGAGATGGACAAGAAAAAGAAAAAGCTAACGCCATATGAAAAATTACGTGATGAAATTTTATCGTTCATGGATGAAATATTCAGGAAATATCTCCAGTGCCCCAATACTTTGGCCCTCCATGAGGTATTTTATTATGATTCCATCAATACACTTCGAGACTGTCTGACTGCCTGTCCACGAGCAGTTCTCCAAAAAGCTTTGTCTAACCCTCATCACTATCTAAAATGTTCCTGTTGTGAATCTGACCCTGGCGTAATTCTGCCTACCAACCCTGACGTTTGCGTGGCCTACAAACTTCACCTTGAATGTGGGAAACTTATTAATCTTTATGACTGGTTACAGAGAAGCGCTCTGATCCACCCATTTACCATTGTTCCTCGTATCATATTTACCTTAACACAAAATAGAGCTCGATTCATCCAAGCTGTGTCGGAGCTCCAGTATCTTGGATTCATTAAACCCACTCGACAAAAGACTGATCATGTGGCCCGTCTTACCTGGGGAAACTGC

Transcript

pred2_35058.1

ATGAGAGGAGATTTTCTCAATGTCAGTGATAATGAAAATGCTCGACTCTGCTTAAATGGCCACAAAGAAACATGGAATCAAGTTGACCAAAAGTTCCAAGAGCTGCAATCAAACATGGTGAAGAACTTATTTGAAAGTCTGTTTGACTACATTGCATTGTGCCATACTAATTTTAATTTGGATGATGTGACCTCAAACGGAAGAAGAACTGCCCGTGCCCAAGAGATTCCCACTGCCGTTCTCATCACAGGTGTCAATACCCCTGACCATGCTGTGATGTTTACCTCCTTGACTGAAATGCTCCAAAATAACATCAGTCCACTTGTGGCTTCTCTCTCCTCAAAGACCTGCACGACAATCCGGAGCACTATTCGTCAGGTGCTCAACCAGATTTTGAAACAATCCTCATCTTTGCATTTTGAAGAAGAGGAAGATGGAGAGGAGGGTGACCCTAGCAGCAATTCTGAATTCTACACAAAGCAATCTCCTTGCACCCTTAATACCCTAGCCAATTGGTACAGTGACAAGTATAAGAAAGCAGAAGACTCTCCTTCTCCTACAAAGAAAAAATGCTTGACCGATCATCTGTCCTCGTCCAGTTCTACTTATCCAAACATCATAATTGTCTTTGAAGACCTTGAGTCTTTTGCCATCCGTCCACTTCAGGATTTTATCAGCATGTGTAGCTGTTACTTGTCCCAGTTACCAATCATTTTCATTTTTGGTGTGGCAACAACCCTGACGgctattcatggCTCTCTACCTAAAACAGTCTCTTCACTGCTTTGTATGGAAAAATTCCAGGCACCAGCCCCATCTGAATATTTGACCAGGCTTTTAAATGAGGTTGTGATGACAGCAGATGTTCCTTTTAAATTAGGACCAAAAGTGTTTGAATATTTACTTGATACTTTCCTATTTCACAATTTCTCTATTCTCAATTTTATCAAAGGATTTCAGTTCAGCATCTTGGACCACTTCTTCAGCTATCCCTTTAGTTATTTGTGTGTCACTGGAGACAGTTCCAAAAATATTGCTAAAATGCTCAAGTCTGCCAACCCTGAAGAAATTCGGCAGATCCCATCCTTTATGAAGCATGTTGAAATGTGTCCTGCTAGTAAACAAAAGAGTTTGCTGCTGAATGATCAACTTCTAAAAGAAGAAGTTGCAATTCTCCTACAACAAATGCACAACTACCACAAGAATTTCTTCCCCATTTTAACCTGTCTTAACAACTTAGTTGGAAAACTTCCAAAATATCCTCTTGGCAAACAGCTGCGTGAGTTGTATGTATTGTGCCTGAAAAGTACCATTTATGAGTCAGAACCTTATTCAGAAGCAATGAACTTGCTCAAGTTTCTGTCCAAGGATGAATTACAGAGGATTCTCAGCCAGTGCCAAGATAGACTTCTGAAAATGACGCTTCCAGAAGCCCTCTGCTATATTCCTGACAGATTATGCAACTTCTTGGAAAGGCTTGAACAACTGGATGATATAGTGCTTGAAGAATCATCGTCATCTGAAGATGAAGGGAAACCAGCTGAGCAAACAACTTTACCCAAACGAATGAGTCTTCATAACCTGCGGAAAACACTTCAAGAGATGGACAAGAAAAAGAAAAAGCTAACGCCATATGAAAAATTACGTGATGAAATTTTATCGTTCATGGATGAAATATTCAGGAAATATCTCCAGTGCCCCAATACTTTGGCCCTCCATGAGGTATTTTATTATGATTCCATCAATACACTTCGAGACTGTCTGACTGCCTGTCCACGAGCAGTTCTCCAAAAAGCTTTGTCTAACCCTCATCACTATCTAAAATGTTCCTGTTGTGAATCTGACCCTGGCGTAATTCTGCCTACCAACCCTGACGTTTGCGTGGCCTACAAACTTCACCTTGAATGTGGGAAACTTATTAATCTTTATGACTGGTTACAGAGAAGCGCTCTGATCCACCCATTTACCATTGTTCCTCGTATCATATTTACCTTAACACAAAATAGAGCTCGATTCATCCAAGCTGTGTCGGAGCTCCAGTATCTTGGATTCATTAAACCCACTCGACAAAAGACTGATCATGTGGCCCGTCTTACCTGGGGAAACTGCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07034	ORC3_N	Origin recognition complex (ORC) subunit 3 N-terminus	Domain	Interproscan
PF18137	ORC_WH_C	Origin recognition complex winged helix C-terminal	Domain	Interproscan
PF19675	ORC3_ins	Origin recognition complex subunit 3 insertion domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020795	Family	Origin recognition complex, subunit 3	Interproscan
IPR040855	Domain	Origin recognition complex subunit 3, winged helix C-terminal	Interproscan
IPR045663	Domain	Origin recognition complex subunit 3, insertion domain	Interproscan
IPR045667	Domain	Origin recognition complex subunit 3, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12748	ORIGIN RECOGNITION COMPLEX SUBUNIT 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003688	Molecular Function	DNA replication origin binding	Interproscan
GO:0005656	Cellular Component	nuclear pre-replicative complex	Interproscan
GO:0005664	Cellular Component	nuclear origin of replication recognition complex	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006270	Biological Process	DNA replication initiation	Interproscan
GO:0031261	Cellular Component	DNA replication preinitiation complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-