Gene detail

Detailed information of pred2_33190.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_33190.1	TRNA PSEUDOURIDINE SYNTHASE D	Sc3x4tf_7	10160018	10192592	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_33190.1

ATGCAGTTGACTTCCGGTTTCCGTCTGACGACTGAGCCGCTGCTACGGGTTAACCATGCGGACGTATTTAAGATAACGTTATGTTCTTCACAATATGTTTTCACTGCTGGGCAAAAGTATAAAGCAAACCACTGTGTGAAAATTTCTATTGTTACCCAAGCCTTTTTGTTTGATTTCCGAATCACGGGCAGATGTATTTTTGATATTCTCATTGGTCGTGGTAATATGGAAATGGAAAAAACAGACAATAAAAAACATGGCAGCCAGTCAGAAAGTGGTCCTAGTCCAAAACGTCAAAAACCAAACAACTCAGAAGACCAGGCGACTGCTTCTGAAATTCCTCCTGCAGTTGTTCCCAAGACATCTGCCAAAGAAAATGGTACTTCCCACAAGGCATCGTATGTCCATTATGAAAAACTGCTTAAAGAGACAGATGTTGGGATTACTGAGTACATTAGCGAACACAAGGGCTTTCATGCAATCCTGAAACAGCGATACTCAGACTTTGTTGTGAATGAAATTGATATCAATGGGGATATTGTACAGTTGACAGATATCACGCCACCCAAAAATGAAGAACGTGTTCTCAAAGATGTCACTGATCGCCTTTCAAGTGAATATATTAAACAATTACAGGAATTGACAGAGAAGAAAGATAAGTCTTCATCAGTTTATATTGAGGTTGCTGATGATAAGGCTGAAAGAACCAAGATTCATCAAGCAATACGGGATGGTTTCTTGGGTCTGGAGAGCACCACAGAGGAAAGAGGGGACAAACGTGTGATTAAAGTTGTCTTTCGCAACTCAAACAGTCGTAGCAGCCGAGGTTCATGGCCACAGGATAGAGGGAATTATTGTAAATTTGTTTTGTACAAGGAAAACAAAGACACCATGGATGCTATTAATTTCATTGCCAAGAAATTAAGAATAAAACCCGGCCAATTCCAATATTCTGGGACTAAAGACAGAAGAGCCAAGTCATCTCAGCACATAACTGTCTTCAGGATTCCTATTGAGCGCCTTTTTATATTGAATAAGGACTTAAAAAACTTATGCCTTGGAAATTTCAGTTACGTGGATGAATGCTTGAAACTAGGGCAGTTACTAGGAAATCGCTTCATCATTGTACTCAGGAATGTAACTGGAAATGATGAGCAATTGACACAAGCCTTGGAATCTCTGAAAGAAAAAGGTTTCATTAATTATTACGGCATGCAACGGTTTGGTACCACATCCATTCCCACACATCACATTGGCAGAGCCCTCTTGCACAGTAACTGGAAGGAAGCTGTAGAACTAATTTTGAAACCGAGAGAAGGAGAGGATGATGAAATCACTGAGTGCCGTCGGATTTGGATGGAGACCAGGAATGCAAAAGAAGTTTTGTCGAAAGTCCCCAAGCGTCATAGTCTGGAGCGCCTTCTGCTTCAAGGTTTGGCATCACAAGGATCAAATAATTTTTGCAATGCACTTGTATCAATTCCACGCAACACACGCCTCATGTATGTCCACAGCTACCAGAGTCATGTGTGGAACACCATGGTCTCCCGAAGAATTCACCAATTTGGCCTGACTCCTGTGGTTGGAGATTTGGTTTTTGATAACACTGATTCCACACCTCGAGATCCTGATGCTTCCAGGGAACGCCCACATGTGATCACTGCAGAAAGCCTTGACAACTACACCATCCATGATGTTGTGATGCCCCTCCCTGGGTATGACATTATGTACCCTGAAAATGAAGCTCACACTTGGTATCGTGAAATGCTGGAAAAGGATGGCTTAAGCATTGATAACCTCAGGCATTCCAACAAAGATTATTCCCTCCCTGGTGCTTACCGAAAGGTCATCATAAAACCATCGGACGTTTCTTGGCAGCTCTACAACTACAATGACCCTACCATTTCATTGGTATTGAGTGACTATGAAAGCCTCACTGGGGAAAAAGAAGTACACAGCTTGGAGGATGGTAAACTGAAAGCTATAAGACTGTGCATTACCCTTCCTCCTTCCTGTTATGCAACAATGGCTATCCGTGAAATTCTCAAGACAGACACTTCATCCTGTTACCAAGCACGACTCACGGCGGAAGACACCACAGACTGTAAAGCTGACCAA

Transcript

pred2_33190.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01142	TruD	tRNA pseudouridine synthase D (TruD)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001374	Domain	R3H domain	Interproscan
IPR001656	Family	Pseudouridine synthase, TruD	Interproscan
IPR011760	Domain	Pseudouridine synthase, TruD, insertion domain	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR042214	Homologous_superfamily	Pseudouridine synthase, TruD, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13326	TRNA PSEUDOURIDINE SYNTHASE D	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-