Gene detail

Detailed information of pred2_29664.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_29664.1	MACROPHAGE ERYTHROBLAST ATTACHER-RELATED	Sc3x4tf_178.1	10757118	10704432	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_29664.1

ATGGACGGCAAGGAAGATGAAGTTTTACAATTCCATGAAATGGGTCTCGATGATCGAATTCTCCAGGCTATTGCCAAACTTGGATGGGGTCAGCCGATGCCAATTCAAGAACAGGCAATTCCATTGGCTGTGGAAGGAAAAGACATTTTGGTCAGAGCAAAAACTGGATCTGGCAAAACGGCTGCATATGCCATTCCTCTCATCCAAAAGGTTCTTCTGGCAAAACAGCAACTCAGTGTTTGTTGTTCCACTGAAGTGCAATGTGTCGATGTCAGCCCAAAAGTTCCTCTTCCAGTTCAAAAACCTCTCCTGATTGAAAGGCCAGATATTGTAATTGGCACCCCAACAAGAATCTTGGCCCACATTAACGTGGGTAATTTGTCCCTCACGGACTCAATGGAAATGTTAGTGATTGATGAAGCCGATCTTCTGCTTTCATTTGGTTATGAACCAGACATGAAAGCTTTAATGAAACATTTCCCTCGTATCTATCAATCTTTTTTGATGTCAGCTACAATGAGTGAGGATGTCTACACTCTGAAAAGATTGGTCCTTCACAATCCTGTAACATTAAAACTTGAAGAAAGTCATGTCCCTGAACAGCTGATGCAGTACCATGTAATGGTTGAAAAAGAAGACAAATTTGCTTTGCTTTGTGCTCTTTTCAAACTTGGGTTAATACGAGGAAGGACTTTAATCTTTGTCAATTCTGTTAATCAGTGTTACAGACTGAAAATGTTCTTACAGCAATTTGGCATTAAATCTTGTGTGCTTAACTCAGAATTGCCTGTATCTTCAAGATGTCATATTGTTGAGGAATTTAATCAAGCCATTTATAACATCATAATTGCTTCTGATGAGCAAGTGTTTCAAGATGTGCCAGAGGAAAATGACAGCAAAAAGATGAAGAGGAAGAAACCCCAAAATGAAGAATACAGTGTCTCACGAGGAATTGATTTCCATAACGTGGCAAATGTCATCAATTTTGAATTCCCAGACACTGTGAATGCCTACATTCACCGAATTGGAAGGACAGCTCGTGGAAACAGAAAAGGCACAGCTTTATCTTTTGTGGAGATTGCAGAAAAAGAAAACTTTGAGGCTGTAAAAGAATCTATGCTAAAAAGCAAAAATGATGAAGAAAGTGCCTTTAAGCCGTATAACTTCCGGATGCAAGAAATTGAAGGATTCAGATACAGAAGCAAAGACGCTTTGAGGACCTGCACTCGAAAAGCCATTAAGGAAGCCAGATTAAAAGAAATTCGTCAAGAACTTCTCAATTCTGAGAAATTGAAGACTTATTTTCAAGACCATACTCGGGACAGGCAGGTTCTGCGTCATGACAGAAAGTTAAAAACAAGCTACAAACAGTTGAAACTAGACCATGTGCCTGACTACATTGCATATGACGTCAGCCATAATGATTCAGTGGACTCTGGATTCACTTTCAGCTGTGGTGCTTCGTGTCTGTCGACAAAAATGGATGTTTGTCAACTGGTTGAGAAAGAACTGGAGAAGGTTTTATCAAAATTCTCTGCTCTTCGTGAACATACGCAACGAGCCTTAGGAGACATTACGACTTCGGTAGATAACATTAGAAAGGAAATCAGTCAAGTGCCTGAGGACAGAGAGCTGACAGCCACACAGTCCCTGGTCCTATCTCAGTGCCTACGTAGAGTGCGTGATACAGTCTCCAGACTCAGTACAGAACACAAAGATCTTCATAGCACTGTATCACGAGTAGGTAAAGCCATCGATAGAAATTTCAAATCTGATTTCAGTTCAATAACCACAGCAGGTGCTTTTGAAGGGGATGAAAAGCAGAAAATCCTGAACAAAGTTGTGTGTGAACATTTTTTACGACAGGGCATGTTAGATATAGCTGAAGCCCTAAACGAAGAAGCAGATCTCAATTTGGAAGAGAGCAGAAAGGAGCCATTTTTAGAATTGCATCGCATTCTGGAAGCATTAAAAGAAAAGAATTTGGAACCAGCTTTAAAATGGGCAGAAGCAAACCGTGCAAAATTAATGGCCCAAAACAGTTCATTAGAATTTAAGTTACATCGTCTGCAGTTCATCAGTTTGATACGTCAAGGGCAGAGTAAACAGCATGTGGCACTCTCATACTCAAAGAAATTTGCACCTTTCGCTAGTCAACATGCAAAAGATTTACAAGTGCTCATGGGCAGTCTGTTGTATTTACACCAAGACATTGAAAAGTCACCCTATGCCTATTTACTGGATCCTATTTATTGGGCAGAGATTTGTGATGTCTTCACTCGAGATGCCTGTACATTAATGGGTCTCTCTGTGGAAAGTCCCCTTACAGTCAGCATGCGCGCTGGGTGCATTGCACTTCCACCTTTACTCAGTATTCGGCAAGTAATGCAACAACGTCATTGCACGAGTGTATGGACAGCAAAGGATGAATTACCAGTTGAAATTGATCTGGGGAGTGACTATCATTATCATTCAATTTTTGCCTGCCCCATTCTCCGACAGCAGAGCAGTGACAGCAATCCCCCAATGCGACTTATTTGTGGCCATGTCATTTCCCAAGATGCTCTTAATAAATTGACTAATGGCACAAATACAGTATCGGCATTCCTTTCTCGTTCCAGAGTCAAGTGCCCATATTGCCCCATTGAACAGATCCCAGCAGATGCAACACGGATATACTTT

Transcript

pred2_29664.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF10607	CTLH	CTLH/CRA C-terminal to LisH motif domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR006594	Conserved_site	LIS1 homology motif	Interproscan
IPR006595	Domain	CTLH, C-terminal LisH motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR013144	Domain	CRA domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR024964	Domain	CTLH/CRA C-terminal to LisH motif domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044063	Domain	Gid-type RING finger domain	Interproscan
IPR045098	Family	Fyv10 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12170	MACROPHAGE ERYTHROBLAST ATTACHER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0034657	Cellular Component	GID complex	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-