Gene detail

Detailed information of pred2_25872.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_25872.1	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2	Sc3x4tf_838	21732	66704	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_25872.1

ATGGGTACTGAGGCCAAACGGAAGGCCCTGTTCTGGGGTTCTAATGGGAGTAATAGGCAACAATTCTGCGTACAGAGTATTTTGGTCATCATAGACAAATTACTAGCAAGTTTAACTCACCGTCGACCTGCTTATCACAAAATATCTCATGATTTTGCATTCATCAAGTCTTTAAAGGAGAATGATGCTTCGCAGCTGAAAGTTGATGTGTCTAACTTGATGAAAAAATACATCAATGACTTGGAGCCAAACTTCAAGGATGAGTTTGTAAATTTCTCAAAATGTGTGGCCCATTTGAAGTTGGATTGTGATCCTCAGGTCCTGTTGAAATACTTGAGAAATAACACAGTTGTCGAGTTGACATTTGCAAATGTTTCAACTGCTCTGAGACTATTCTTTATATTACCAGTCACAGTCTGTGAAGTGGTCCTTCGCCTGTTAGTACTGCTGCTCTGTCTAATATTTATTGTAACGACTGTCAGTGGACGATTGTACTTATTCCAGAAGAGCTGGGGACCCCACGACGTCAAATATGGACATTTCTCAGAAAAGGAACGATTACGGATGTTACAGATGGTGAGAGAGATGTTCAATTTCGGTTACGACAGTTACATGAATTATGCCTTCCCCAAAGATGAATTGAACCCTCATACCTGTGTTGGCCGTGGACCCGACTATGACAATCCAGTTATTGGCAGAATGTCTTTGGGAACGAATCGTGAATGGAACAGTGACGACGAAGATTGGAGAAATTATGTTGAGCAATTGAAATTTTATTTTGCTGCCAACAATGTAAATGTTGATGGGAAGCAGCAAGCAATACTATTGTCTGGGGTTGGAGCTAAACATTGCTGTTCTTCGAGGGATAGGAGGGATCATGAATCCATTAGCCAATATGTCACGACACTCAGAAAATTGTCCGAGAAATGCAATTTTGAAGACAAACTCAATGAACATCTAAGAGACGAGGTGGGGGAATGTTATGGATACAAGTGGATCAGGCAGATACGACGAAAGTGTAGACAGGATGGAAGGATGCAATTCGGTGAGAAATGGAAAGAGGACCGAAAGACTGCAGTGAATACCATTGATGATAGTCTTTTAAGTTGCTGCTTTCTCTCTGGAGTGGAGTTATACGAGTTGAAAGCCTATCTTGGGGCTTTGAACTTCTACAATCATCATTGGCCAAATTTGTCAACTATAATTGAGCCACTGCAGAAGAAAGAGAAAACCTGGATGTCTGGTGCAGATCAGCAAAAGGCTTTCCTAACTACCAAGAAAATGTTGTGTTCTGCACCTTTGTTGACACATTTTGACCCTTCCAAACCGATTCTGGTAGATGCAAATGTTTCTCCTTACGGAATAGGAGCTGTGATGGCCCATACAATGGATGCTGGGAGTGAAAAGCCGGCCTGTTACATATCATGTACGTTGTCCGCTGCAGAGAAAAAGTATGCCCATATTGAAAAGGAAGGGCTGGCACTTGTGTTTACCGATGTTTATGGAGTTTGGCATATATTTACGACTCCGTATCACCCCTCCACAAACGGCCAAGCTGAATGTACTGTTCGCACCTTCAAGGAGGCAATAAAGAAGATGAAAGTGGACGGCAGGGGGACATTTGAGACTAAAGTCAGCAGGTTCTGTTTCTCGTTCACAATCCCTCCACATTCAACAACTGGAGCTTCTCCTGCTGAATTGTTGTTCAAACGTCAGTTATATCAACTTTTGAAGTGTCCAACCAAGTCAGCTGAGATAGGGGTGCCTAATGTTCCTGTTGTTACAGCGTCTGAGGTTCCTATGGTTCCTCGAACATCTGAAGTTCCTTTTTTAAGGATTATGGGTAACAACACAGAGTTCCAACGTGCTGTCAAACTGGTCGTGGAAAGTGTCTCCTTTGATAAGAACAATACTGTGCAAGTGTTTGAAGCTACCATTAGGGTTCTGGGAGCTTTGCTGTCTGCTCACCTGATCATCACTGACCCTCTGCAGCCATTTGGTGACATGCGGATGGATGACTACCAGGATGAACTTCTTCATCTTTCTCATGATCTCGCATCCCGTCTTTTGCCAGCATTTGAAGACACCGTGACTGGAATTCCCTACCCACGGATAAATTTGAGAAAAGGTGTCCCTGAAAACTGCCTGAACGAGACTTGTACATCTGGTGCTGGTACTCTTCTGCTGGAGTTTGGTGTACTCTCTCGTCTCCTTGATGATCCGATATATGAGTCTGTGGCTCGTAGAGCAGTTAACTCTCTCTGGAAATACAAATCAAATGTTACAGGCTTACTAGGTAATGTAATCAACATCCAGACAGGTGAATGGGTTGGCATCATGAGTGGTCTTGGAGCTGGATTAGACTCCTTTTATGAATATTTGCTCAAGTCTTTTATAATGTTTGGTGGTGCTGAAGACCTGAAGAGATTTAATGAATCTTATGAAACTATAAAGTTTCATATGCGTAGAGGGAGACTTCACTGTAACAAAGGTCTTGGACATCCTCCATTGTATGTTAATGTTAACATGAGAACAGGGGATACAGTCAACAACTGGGTTGACTCTCTTCAGGCTGCATGGTCAGCAGTTCAGGTTTTGAATGGAGATGTTGAAGAAGCAATTTGCACCCACGCTTTCTTCCATGCAATCTGGAAAAAGTATGGAGTTCTTCCCGAGCGATTCAATTGGCAGTTCAAAGCTGCAGATTTGCACTTCTACCCACTTCGCCCTGAATTAGTCGAGTCAACCTACTTCCTGTACCAAGCCACCAAAAACCCCTTCTACCTCCACGTCGGAAAAGAAATTATACACAGCCTCAACACTCACGCAAAGGCCAAATGTGGCTATGCAACAATCCATAACGTTCATCGAATGGATCAAGAAGATCGAATGGAAAGCTTCTTTCTCAGTGAAACTTGTAAATATTTATATTTGTTATTTGACAAAGATAACCATTTAAATAAAGAGGCCACAAAATACATATTCAGTACAGAAGGCCACGTCTTCCCTATCAATGGAAAATTTAGACTGAAGAAATACAAAGATACTCCCAAACGAACGCGTTTAAAACCGTCACTCAGTATTGTAGATTCTGCTCCTAAAAACCATTCTAAGTGCACCAACATTCCTCTGGAGTCAAGATATTTTCTTCCTGTAAAAAGTGTCTACCTTGAACAAATAGAACAAGCAGTAGGACTACTTGACTCGAAA

Transcript

pred2_25872.1

ATGGGTACTGAGGCCAAACGGAAGGCCCTGTTCTGGGGTTCTAATGGGAGTAATAGGCAACAATTCTGCGTACAGAGTATTTTGGTCATCATAGACAAATTACTAGCAAGTTTAACTCACCGTCGACCTGCTTATCACAAAATATCTCATGATTTTGCATTCATCAAGTCTTTAaaggagaatgATGCTTCGCAGCTGAAAGTTGATGTGTCTAACTTGATGAAAAAATACATCAATGACTTGGAGCCAAACTTCAAGGATGAGTTTGTAAATTTCTCAAAATGTGTGGCCCATTTGAAGTTGGATTgtgatcctcaGGTCCTGTTGAAATACTTGAGAAATAACACAGTTGTCGAGTTGACATTTGCAAATGTTTCAACTGCTCTGAGACTATTCTTTATATTACCAGTCACAGTCTGTGAAGTGGTCCTTCGCCTGTTAGTACTGCTGCTCTGTCTAATATTTATTGTAACGACTGTCAGTGGACGATTGTACTTATTCCAGAAGAGCTGGGGACCCCACGACGTCAAATATGGACATTTCTCAGAAAAGGAACGATTACGGATGTTACAGATGGTGAGAGAGATGTTCAATTTCGGTTACGACAGTTACATGAATTATGCCTTCCCCAAAGATGAATTGAACCCTCATACCTGTGTTGGCCGTGGACCCGACTATGACAATCCAGTTATTGGCAGAATGTCTTTGGGAACGAATCGTGAATGGAACAgtgacgacgaaGATTGGAGAAATTATGTTGAGCAATTGAAATTTTATTTTGCTGCCAACAATGTAAATGTTGATGGGAAGCAGCAAGCAATACTATTGTCTGGGGTTGGAGCTAAACATTGCTGTTCTTCGAGGGATAGGAGGGATCATGAATCCATtagccaatatgtcacgacactcagaaaattgtCCGAGAAATGCAATTTTGAAGACAAACTCAATGAACATCTAAGAGACGAGGTGGGGgaatgttatggatacaagtggatcaggcagatacgacgaaagtgtagacaggatggaaggatgcaattcggtgagaaaTGGAAAGAGGACCGAAAGACTGCAGTGAATACCATTGATGATAGTCTTTTAAGTTGCTGCTTTCTCTCTGGAGTGGAGTTATACGAGTTGAAAGCCTATCTTGGGGCTTTGAACTTCTACAATCATCATTGGCCaaatttgtcaACTATAATTGAGCCACTGCAGAAGAAAGAGAAAACCTGGATGTCTGGTGCAGATCAGCAAAAGGCTTTCCTAACTACCAAGAAAATGTTGTGttctgcaccttTGTTGACACATTTTGACCCTTCCAAACCGATTCTGGTAGATGCAAATGTTTCTCCTTACGGAATAGGAGCTGTGATGGCCCATACAATGGATGCTGGGAGTGAAAAGCCGgcctgttacatatcatgtacgttgtccgctgcagagaaaAAGTATGCCCATATTGAAAAGGAAGGGCTGGCACTTGTGTTTACCGATGTTTATGGAGTTTGGCATATATTTACGACTCCGTATCACCCCTCCACAAACGGCCAAGCTGAATGTACTGTTCGCACCTTCAAGGAGGCAATAAAGAAGATGAAAGTGGACGGCAGGGGGACATTTGAGACTAAAGTCAGCAGGTTCTGTTTCTCGTTCACAATCCCTCCACATTCAACAACTGGAGCTTCTCCTGCTGAATTGTTgttcaaacgtcAGTTATATCAACTTTTGAAGTGTCCAACCAAGTCAGCTGAGATAGGGGTGCCTAATGTTCCTGTTGTTACAGCGTCTGAGGTTCCTATGGTTCCTCGAACATCTGAAGTTCCTTTTTTAAGGATTATGGGTAACAACACAGAGTTCCAACGTGCTGTCAAACTGGTCGTGGAAAGTGTCTCCTTTGATAAGAACAATACTGTGCAAGTGTTTGAAGCTACCATTAGGGTTCTGGGAGCTTTGCTGTCTGCTCACCTGATCATCACTGACCCTCTGCAGCCATTTGGTGACATGCGGATGGATGACTACCAGGATGAACTTCTTCATCTTTCTCATGATCTCGCATCCCGTCTTTTGCCAGCATTTGAAGACACCGTGACTGGAATTCCCTACCCACGGATAAATTTGAGAAAAGGTGTCCCTGAAAACTGCCTGAACGAGACTTGTACATCTGGTGCTGGTACTCTTCTGCTGGAGTTTGGTGTACTCTCTCGTCTCCTTGATGATCCGATATATGAGTCTGTGGCTCGTAGAGCAGTTAACTCTCTCTGGAAATACAAATCAAATGTTACAGGCTTACTAGGTAATGTAATCAACATCCAGACAGGTGAATGGGTTGGCATCATGAGTGGTCTTGGAGCTGGATTAGACTCCTTTTATGAATATTTGCTCAAGTCTTTTATAATGTTTGGTGGTGCTGAAGACCTGAAGAGATTTAATGAATCTTATGAAACTATAAAGTTTCATATGCGTAGAGGGAGACTTCACTGTAACAAAGGTCTTGGACATCCTCCATTGTATGTTAATGTTAACATGAGAACAGGGGATACAGTCAACAACTGGGTTGACTCTCTTCAGGCTGCATGGTCAGCAGTTCAGGTTTTGAATGGAGATGTTGAAGAAGCAATTTGCACCCACGCTTTCTTCCATGCAATCTGGAAAAAGTATGGAGTTCTTCCCGAGCGATTCAATTGGCAGTTCAAAGCTGCAGATTTGCACTTCTACCCACTTCGCCCTGAATTAGTCGAGTCAACCTACTTCCTGTACCAAGCCACCAAAAACCCCTTCTACCTCCACGTCGGAAAAGAAATTATACACAGCCTCAACACTCACGCAAAGGCCAAATGTGGCTATGCAACAATCCATAACGTTCATCGAATGGATCAAGAAGATCGAATGGAAAGCTTCTTTCTCAGTGAAACTTGTAAATATTTATATTTGTTATTTGACAAAGATAACCATTTAAATAAAGAGGCCACAAAATACATATTCAGTACAGAAGGCCACGTCTTCCCTATCAATGGAAAATTTAGACTGAAGAAATACAAAGATACTCCCAAACGAACGCGTTTAAAACCGTCACTCAGTATTGTAGATTCTGCTCCTAAAAACCATTCTAAGTGCACCAACATTCCTCTGGAGTCAAGATATTTTCTTCCTGTAAAAAGTGTCTACCTTGAACAAATAGAACAAGCAGTAGGACTACTTGACTCGAAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01532	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001382	Family	Glycoside hydrolase family 47	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR012341	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR036026	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR044674	Family	ER degradation-enhancing alpha-mannosidase-like protein 1/2/3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45679	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004571	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:1904380	Biological Process	endoplasmic reticulum mannose trimming	Interproscan
GO:1904382	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-