Gene detail

Detailed information of pred2_18678.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_18678.1	VESICULAR-FUSION PROTEIN NSF	Sc3x4tf_86	258196	210036	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_18678.1

ATGGTGTGTTTTGCAACTTTTAAAACCCAGTCAGATTTGGCATTGCATGTCCTTGTTCGAAATCCTGTTGGGTTACAGTATGCTTTCCCTGTTAAAGTCTCTAAAGATATTCCCAAGGGAAAAGTGGGCTTCAATGCACTGCATCGGAAATGGGCGCAATTACCTCTTAACACAAAAGTAGAGGTTAAAGTGCCTGGACCAGGCCACTTTGACACCATTGAATCTATTATGCTCGAGATTGATTTTTTTAACAAAAAAAAAGTATCAACAGAATCAATGAATACTGAGCATATTGCCAAGGATTTCAGTGATACCTTTGTAAACAATGTATTCTCAGTTGGGATGCCCATGGCATTTGAATTCAATAATACCGTATTGGCTGCTACTGTCAAAGAAATCAAAGTGTTTGACCTTTCCAAAAACATAGATGGTGGTGCATCTTCAAGAGTTGGTCTAACTGGGGTGCTTATTGGTAATTCCCACATAAAATTTCAAGCATCTGAGAATTCAGCCATCATGTTGGTGGGCAGGAATAAAGGGTACCAATCTGTTATCTCTCCTGACTGGGATTTCACTAAAATGGGAATTGGTGGTCTGGATAAAGAATTCTCAACAATTTTTCGACGAGCGTTTGCTTCTCGAGTTTTTCCTCCTGATATTGTTGAACGACTAGGTGTCCGTCACGTGAAAGGTATCTTGCTGTTTGGCCCACCAGGTACAGGCAAGACTTTGATTGCCAGGAAAATTGGTAAGATGTTAAATGCAACTGAACCAAAAATTGTGAATGGCCCACAGATTTTAGACAAATATGTTGGCGAGTCTGAAGCAAATATCAGAAAGTTGTTTGCTGATGCTGAAGAAGAAGAAAAAGCTCGTGGACGAAATAGCAAACTTCATATTATTATATTTGACGAAATTGATGCTATTTGTAAACAGAGAGGAAGTGTGGGTGGAGGTACTGGTGTACATGATACAGTAGTGAACCAGCTTCTCACAAAGATAGATGGTGTGGAACAGTTGAACAACATTCTTGTCATTGGTATGACAAACAGGAGAGATTTGATTGACGATGCCCTCACGCGACCTGGTCGTATGGAGGTGCAGATGGAAATTGGTCTCCCTGATGAAAAAGGCCGAGTGGATATATTAAAAATTCACACTAAAGCAATGCACGAAAGCAACTTGCTGCATGATAATGTCAGTCTTGAAGACCTAGGATCAAAAACCAAGAACTTCAGTGGAGCCGAATTAGAAGGTCTTGTTCGCTGTGCAGTATCCACTGCAATGAACAGTCTAATCAAGGGCTCATCTCAAATAGAATTGGCAGCTGAAGATGCTGAAAAAGTCAAAGTTACGCAGGAAGATTTTCTCAGTTCCTTAGATGATATTAAGCCAGCATTTGGTCGAAGTGATTTTAACTTCACTTCCTTCTTTCCTAATGGTATCATTGAATGGGGTGAGAGTGTGCAGCAAGTGCTCACTGATGGTAATCTCCTCATCTCCCAGATAAAGAACAGTACAAAGACACCACTCCTTACTACATTGTTACATGGTCCTCCTGGAGCTGGAAAATCTGCACTTGGAGCTTATTTGATGGCCAATTCTGACTTACCTTTTATCAAAGTTTGCTCACCAGAATCCATGATTGGCTACAGTGAAATGGCAAAAGTCCAGTTCATCAGAAAGATTTTTGAGGATTCCTACAAATCGCCTCTCAGCTGTATTCTGCTTGATGATATTGAAAGGATTATTGATTACGTTGCAATTGGGCCTCGGTTCTCCAACAATGTATTGCAGTGCCTGCTAATTCTACTGAAGAGATCTCCACCAATGGGTCGACGTCTGCTTGTGATTGGTACAACTGGCCTGAAAGATGTGCTTCATGAAATGGGTATGTTGAATACTTTCATGCAGAACCAACATGTTGCTGTCCTCAGCAAGCAAGAACACCTCATCGCTGCCCTCAATGAACTTGAAATTTTCAACACTAATGAAATGATGAAGATCAAGGAAAGATCCAGAAATATGAGATTTCATATTGGTATTAAAAAGTTACTTATGCTAGCAGAATTTGTGCGTCAAGTAGACCAAAAAGAACGCGTGCATCAATTCTTGTACCGTCTGCAGGATGAAGGTTGCATGTTTGCTGATGACATAGGTTACCGTGAACGGCAAACAATTCCTTACAAAAAAGTTAAAACAATGAGCAGTGTCAAACATCTTCGACTTTTCGTCGGCAATTTGTCTTGGACGATCGGGAAAAAAGAGCTGAAGGAATACTTTACTAAATTCGGATCCGTCAGGAATTCTAATGTTCTGTTCAATCGTCAGACAGGCATTAGCCGAGGCTTCGGTTTTATTCAATTCGCCAATCGAGAGGGATACAATGCTGCCATCTCGCAAGAATCCCACGTGTTGGAAAATAATCATTTGGTTGTAGCTGGAGAAACATCACGGAGAATGTCTCAATTAAGTGCTGAAGAATCTGATTTAACTTCATTTCAA

Transcript

pred2_18678.1

ATGGTGTGTTTTGCAACTTTTAAAACCCAGTCAGATTTGGCATTGCATGTCCTTGTTCGAAATCCTGTTGGGTTACAGTATGCTTTCCCTGTTAAAGTCTCTAAAGATATTCCCAAGGGAAAAGTGGGCTTCAATGCACTGCATCGGAAATGGGCGCAATTACCTCTTAACACAAAAGTAGAGGTTAAAGTGCCTGGACCAGGCCACTTTGACACCATTGAATCTATTATGCTCGAGATTGATTTTTTTAACAAAAAAAAAGTATCAACAGAATCAATGAATACTGAGCATATTGCCAAGGATTTCAGTGATACCTTTGTAAACAATGTATTCTCAGTTGGGATGCCCATGGCATTTGAATTCAATAATACCGTATTGGCTGCTACTGTCAAAGAAATCAAAGtgtttgacctttccaaaaacatagatggtggtgcatcttcaagagttGGTCTAACTGGGGTGCTTATTGGTAATTCCCACATAAAATTTCAAGCATCTGAGAATTCAGCCATCATGTTGGTGGGCAGGAATAAAGGGTACCAATCTGTTATCTCTCCTGACTGGGATTTCACTAAAATGGGAATTGGTGGTCTGGATAAAGAATTCTCAACAATTTTTCGACGAGCGTTTGCTTCTCGAGTTTTTCCTCCTGATATTGTTGAACGACTAGGTGTCCGTCACGTGAAAGGTATCTTGCTGTTTGGCCCACCAGGTACAGGCAAGACTTTGATTGCCAGGAAAATTGGTAAGATGTTAAATGCAACTGAACCAAAAATTGTGAATGGCCCACAGATTTTAGACAAATATGTTGGCGAGTCTGAAGCAAATATCAGAAAGTTGTTTGCTGATGCTGAAGAAGAAGAAAAAGCTCGTGGACGAAATAGCAAACTTCATATTATTATATTTGACGAAATTGATGCTATTTGTAAACAGAGAGGAAGTGTGGGTGGAGGTACTGGTGTACATGATACAGTAGTGAACCAGCTTCTCACAAAGATAGATGGTGTGGAACAGTTGAACAACATTCTTGTCATTGGTATGACAAACAGGAGAGATTTGATTGACGATGCCCTCACGCGACCTGGTCGTATGGAGGTGCAGATGGAAATTGGTCTCCCTGATGAAAAAGGCCGAGTGGATATATTAAAAATTCACACTAAAGCAATGCACGAAAGCAACTTGCTGCATGATAATGTCAGTCTTGAAGACCTAGGATCAAAAACCAAGAACTTCAGTGGAGCCGAATTAGAAGGTCTTGTTCGCTGTGCAGTATCCACTGCAATGAACAGTCTAATCAAGGGCTCATCTCAAATAGAATTGGCAGCTGAAGATGCTGAAAAAGTCAAAGTTACGCAGGAAGATTTTCTCAGTTCCTTAGATGATATTAAGCCAGCATTTGGTCGAAGTGATTTTAACTTCACTTCCTTCTTTCCTAATGGTATCATTGAATGGGGTGAGAGTGTGCAGCAAGTGCTCACTGATGGTAATCTCCTCATCTCCCAGATAAAGAACAGTACAAAGACACCACTCCTTACTACATTGTTACATGGTCCTCCTGGAGCTGGAAAATCTGCACTTGGAGCTTATTTGATGGCCAATTCTGACTTACCTTTTATCAAAGTTTGCTCACCAGAATCCATGATTGGCTACAGTGAAATGGCAAAAGTCCAGTTCATCAGAAAGATTTTTGAGGATTCCTACAAATCGCCTCTCAGCTGTATTCTGCTTGATGATATTGAAAGGATTATTGATTACGTTGCAATTGGGCCTCGGTTCTCCAACAATGTATTGCAGTGCCTGCTAATTCTACTGAAGAGATCTCCACCAATGGGTCGACGTCTGCTTGTGATTGGTACAACTGGCCTGAAAGATGTGCTTCATGAAATGGGTATGTTGAATACTTTCATGCAGAACCAACATGTTGCTGTCCTCAGCAAGCAAGAACACCTCATCGCTGCCCTCAATGAACTTGAAATTTTCAACACTAATGAAATGATGAAGATCAAGGAAAGATCCAGAAATATGAGATTTCATATTGGTATTAAAAAGTTACTTATGCTAGCAGAATTTGTGCGTCAAGTAGACCAAAAAGAACGCGTGCATCAATTCTTGTACCGTCTGCAGGATGAAGGTTGCATGTTTGCTGATGACATAGGTTACCGTGAACGGCAAACAATTCCTTACAAAAAAGTTAAAACAATGAGCAGTGTCAAACATCTTCGACTTTTCGTCGGCAATTTGTCTTGGACGATCGGGAAAAAAGAGCTGAAGGAATACTTTACTAAATTCGGATCCGTCAGGAATTCTAATGTTCTGTTCAATCGTCAGACAGGCATTAGCCGAGGCTTCGGTTTTATTCAATTCGCCAATCGAGAGGGATACAATGCTGCCATCTCGCAAGAATCCCACGTGTTGGAAAATAATCATTTGGTTGTAGCTGGAGAAACATCACGGAGAATGTCTCAATTAAGTGCTGAAGAATCTGATTTAACTTCATTTCAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR009010	Homologous_superfamily	Aspartate decarboxylase-like domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029067	Homologous_superfamily	CDC48 domain 2-like superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039812	Family	Vesicle-fusing ATPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23078	VESICULAR-FUSION PROTEIN NSF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005795	Cellular Component	Golgi stack	Interproscan
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0035494	Biological Process	SNARE complex disassembly	Interproscan
GO:0043001	Biological Process	Golgi to plasma membrane protein transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-