Gene detail

Detailed information of pred2_11144.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_11144.1	TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED	Sc3x4tf_571	3038594	2984647	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_11144.1

ATGTACAGTTCAACCGTACATGAATATGAACATAAATTAAGAAAAACAACCGAAAGAACGGGCAATGCTTCTTATACACATGAAACATTAACACTGCAGTACCGTTTAGATAATGAACATGAACTGGTGTTTGTGGTGGCATATCAAAAGATATTACAGTTGACATATATAGATGAATTTCTCATAGTTATACAAGAGGAATTTCGAAACAAGTACAAAGATGATTTGCAACGAGGGAATATATATCGAAATTTTGATTTTCATGAAGCTTTTTCCCACTTACTCAAGGAAACGGAGGATAAAAGCATTCAACAGGCGCATAAGCCGCGGAAAATGAAGACTTATGAAGAGTCTCAAAAGTCTAAAAAAACTATAGCCTCCATGATAGAAAACAAAAAAGAAGATAAGAAGAAAAAAGATGAAAAGTCCAATAAAGTCCGTCCTAATGAAGTTGCCCCGCCTGCAACACCACCTAAGCCCAAGATGTCACCCATCACCAAAGTGAATGGAGAGTTGGATGAGGAGACAATCCGCAGGAATATTGAACTCTTGAAATTAACCAAAAAGAAGAAATCAACTCCGAAAGCAGCAGACACCAGCAAAAGTCCTCAGGATAAAAAGAAGAAAGGAAAAGAAGCCCGCAAATGGGAATGTGCTGGTAATACTAAAGACATGGAAAATTTGGACTTTAGCAATACAAATGGCGTCTCGAATGGTGAGATTTCTGATGCTGACATTCTCAAAACTCTCACTCAAGATGATTTGAGTATGACTGGTCAAATGAAAGGTGGTCTGAGGGACATGGAACCTGAGAGTAGCAGTGAGGAAGAGGAGGAGGAGGAAGTGCGGCCAAAAAGGATTTATTTGTATATGTGGAGGATGAGCATGTCCCAAATGATGGAATGTCATAAATCTATATGCAAGGTTGCTCACCAAACTGTGGACAAATCCAAAAATGTAGCTTCAGACATTGCTCAAAAACTGTGTGATTCTGTTGCCACTAAGTTGGAAGGCAAAGTGCTTGGAACCTTTGGGAGTATTACCACAACTGTGAAGAATACTTTAAATGAATCCTGTGTCCAGATTCTGTCTCCACAACGTCGTGTAGATATCCTGCGTGATGCATTAGATGCCAAACAACAGCGTCGTCCTTACTGTATCACCTTTTGTGGTGTGAATGGGGTTGGCAAGTCCACTAATTTGGCTAAGGTGTGTTTCTGGCTTGTTGAAAATGGGCTGCGTGTGCTGATTGCTGCATGTGACACATTCCGTGCTGGTGCTGTTGAACAGCTGCGTACTCACACCCGCAAACTGAATGCCCTCCACACACCTGAAATGCATAATGGTGTGCAGATGGTGCAACTTTATGAGAAAGGCTACGGAAAAGATGCTGCCGGAATTGCTAAAGAAGCCATTAATTATGCCCGTGACAGCCGTACAGATGTAGTCCTTGTTGACACTGCTGGCAGAATGCAAGACAATGCACCTTTAATGAAAGCTTTGGCTAAACTTATCACAGTGAACCAACCTGATCTGGTTTTGTTTGTCGGTGAAGCTCTTGTAGGCAATGAGGCTGTTGACCAACTCACCAAATTCAACCAGGCTTTGGCTGACAACTCCAACATGACTAACCCCAGACTTATTGACGGAATCATCCTTACTAAATTCGATACAATTGATGACAAGGTCGGAGCGGCTATTTCCATGACTTACACCACTGGCCAGCCCATTGTCTTTGTTGGCACTGGACAAACTTACACTGACCTTAAAAATTTGAATGCCAAAGCTGTCGATCTGATGAACGAATTCCAAGCATCCATACATCCCAAACAATTTCAAGCTGAATCTACAAAATGTCTACCCATTTCTACACGTCTCATTCCCCCGCCATCATCAGCCTCACGGCACAAAATTCCTACCACAATGGATGAAAGCTTGCTTTGTAAATATTGCAATAAGATGTTCAGCAGCGCCTCGGAGCTGACCTTGCACAAACAGGTACACACGTTCTCGTGCGACATCTGCTCGACAGAGTTCATGTTCAAGTCTCTGCTGTCGGCCCACCTGAAAACTCATTCCAAGAAACCCTTTAAGTGCGAGATCTGCTCACGGGGGTTTACAAAACAGGTACAGTTTGCAGCCCACACTAAGACCCACGAGAGTTCCCCCTGCTTCAAGTGTGGGTTCTGTGACCGCCTGTTCACCGAGTCGTCAACAATGCTGACCCACATTGAGGAACACCTGCAAAACACCTACAGGTGCGGCCTCTGTTCAAAAGGCTTCAAATTGTTTAACGATCTCTCGTTACATCTGCGTAGCCACTTCAAGGCTAAGAGCGGTGGTCAACGTGCCAAGAAAGCTGCTGTGGCCAACTTGTTTCTCGATCAGATGACCACAACTACAGACAAAATGCTAACAGGGGACACTGTTACCAATGGGGCAGATGGAGCCGTGGCTCCCGCAACTGGCACAGAAGGTAAGCCACGAAAAGTTCACCAGTGCGAGTACTGCAATGCGATTTTTAAAAGAAAACACCTTCTGACCACCCATCGGCGAATCCACACTGGTGATCGACCGTTTAAGTGCAGCTATTGCACCAAGGACTTCAGCCGCTACTATGCAATGGTGGCACATGAGAGATTGCACACAGGTGACCGCCCCTACAAATGTCTACACTGTGACAAGTCCTTCACAGTGTCCAGCCATCTGAATGTCCACCATAAGCTAAAGCATATAAACCTCCGTCCTCACAAATGCGAGCTCTGCGAGAAGGCCTATCGCAGCCCTGGGGAACTGCGTATTCATATGCGTTCACACACTGGTGACCGACCTTACTCTTGTGAACTGTGTGGCAAGTGCTATGCGACGCAATGCTCCCTGACAATCCACAAAAAGACCCACTCGCCAGATAAAAAACCCTATGTATGTGAACTGTGCGGCCTCTCCTACAAGCAACCGAGTAGCCTCGGGGTCCATATGCGGACATCTCACAGCGGCGACAAAGAGAAGAGGTATCAGTGTGAATTTTGCCAGAAGGGGTTCCACATTGCCGGTAGCCTGCTCCGCCACCGACGCATACATACGGATGAGCGGCCTTACGCGTGTGACCAGTGTGAAAAGTCCTTTCGGGAGTCGTCAGCCCTGAAGACTCACAAACGGCGCCAGCACCTGGGTGACCGTCCTTATGCCTGCGACTGTTGCAAAAAATCCTTCTGCACTCCCACGGACCTTGCACGTCACAAGAAGACCCACAAGGGTCTCATGGTTCTTTCCTCGCTGGCAGCCAGCATTGCCGAGAGCGAAATAAAAGTTTCAAAACCGGGCACCAAAATTCCGAGCGAGCCCACCTCCATGTCACTTATGGTGCCTGTCTCCATCTCGGACGCCTCTACCACGCTCGAAGAAATGTATGCAACTCATCACGTACAAGCAACTGCGGAGATTTCCCTGCCTCAAGAAATCACTTTACCCCAGGAAGTGTCTATTTCACGAGAAGTGACCGTTTCCCACGAGGTGCCTCTGCCCCAGGATATCACCGACGTGGCTCATGAAGTCCCCTTAGCCCATGAAGTTCAGCTTACCCAGGATGTGACTCTCTCCCAACCGTCCATTCCCTTGACCAATGACTCTATGGTTGCAGCAACCGTAGTTGTGACCGACCCGCAGCCTTCCGTGATCTCCTCGGCCATTGGACCCGTTACGTTCACGCTGCCCGTTCCTTCCCTCCATCAGACTGTAAACCTTAATCAACCGGTCACTTTAGCCAGTGAGGTTGCCCTTCACTTACCCCCTCAAATGTCTGTGACGCTGTCCACAGTAAACTCTTCCCCTGAACCAGTGTCCCCAACATCCCAGACGGTCACACTGCCGCAAGTCGTTCAGTCTCTTACG

Transcript

pred2_11144.1

ATGTACAGTTCAACCGTACATGAATATGAACATAAATTAAGAAAAACAACCGAAAGAACGGGCAATGCTTCTTATACACATGAAACATTAACACTGCAGTACCGTTTAGATAATGAACATGAACTGGTGTTTGTGGTGGCATATCAAAAGATATTACAGTTGACATATATAGATGAATTTCTCATAGTTATACAAGAGGAATTTCGAAACAAGTACAAAGATGATTTGCAACGAGGGAATATATATCGAAATTTTGATTTTCATGAAGCTTTTTCCCACTTACTCAAGGAAACGGAGGATAAAAGCATTCAACAGGCGCATAAGCCGCGGAAAATGAAGACTTATGAAGAGTCTCAAAAGTCTAAAAAAACTATAGCCTCCATGATAGAAAACAAAAAAGAAGATAAGAAGAAAAAAGATGAAAAGTCCAATAAAGTCCGTCCTAATGAAGTTGCCCCGCCTGCAACACCACCTAAGCCCAAGATGTCACCCATCACCAAAGTGAATGGAGAGTTGGATGAGGAGACAATCCGCAGGAATATTGAACTCTTGAAATTAACCAAAAAGAAGAAATCAACTCCGAAAGCAGCAGACACCAGCAAAAGTCCTCAGGATAAAAAGAAGAAAGGAAAAGAAGCCCGCAAATGGGAATGTGCTGGTAATACTAAAGACATGGAAAATTTGGACTTTAGCAATACAAATGGCGTCTCGAATGGTGAGATTTCTGATGCTGACATTCTCAAAACTCTCACTCAAGATGATTTGAGTATGACTGGTCAAATGAAAGGTGGTCTGAGGGACATGGAACCTGAGAGTAGCAGTGAGGAAGAGGAGGAGGAGGAAGTGCGGCCAAAAAGGATTTATTTGTATATGTGGAGGATGAGCATGTCCCAAATGATGGAATGTCATAAATCTATATGCAAGGTTGCTCACCAAACTGTGGACAAATCCAAAAATGTAGCTTCAGACATTGCTCAAAAACTGTGTGATTCTGTTGCCACTAAGTTGGAAGGCAAAGTGCTTGGAACCTTTGGGAGTATTACCACAACTGTGAAGAATACTTTAAATGAATCCTGTGTCCAGATTCTGTCTCCACAACGTCGTGTAGATATCCTGCGTGATGCATTAGATGCCAAACAACAGCGTCGTCCTTACTGTATCACCTTTTGTGGTGTGAATGGGGTTGGCAAGTCCACTAATTTGGCTAAGGTGTGTTTCTGGCTTGTTGAAAATGGGCTGCGTGTGCTGATTGCTGCATGTGACACATTCCGTGCTGGTGCTGTTGAACAGCTGCGTACTCACACCCGCAAACTGAATGCCCTCCACACACCTGAAATGCATAATGGTGTGCAGATGGTGCAACTTTATGAGAAAGGCTACGGAAAAGATGCTGCCGGAATTGCTAAAGAAGCCATTAATTATGCCCGTGACAGCCGTACAGATGTAGTCCTTGTTGACACTGCTGGCAGAATGCAAGACAATGCACCTTTAATGAAAGCTTTGGCTAAACTTATCACAGTGAACCAACCTGATCTGGTTTTGTTTGTCGGTGAAGCTCTTGTAGGCAATGAGGCTGTTGACCAACTCACCAAATTCAACCAGGCTTTGGCTGACAACTCCAACATGACTAACCCCAGACTTATTGACGGAATCATCCTTACTAAATTCGATACAATTGATGACAAGGTCGGAGCGGCTATTTCCATGACTTACACCACTGGCCAGCCCATTGTCTTTGTTGGCACTGGACAAACTTACACTGACCTTAAAAATTTGAATGCCAAAGCTGTCGATCTGATGAACGAATTCCAAGCATCCATACATCCCAAACAATTTCAAGCTGAATCTACAAAATGTCTACCCATTTCTACACGTCTCATTCCCCCGCCATCATCAGCCTCACGGCACAAAATTCCTACCACAATGGATGAAAGCTTGCTTTGTAAATATTGCAATAAGATGTTCAGCAGCGCCTCGGAGCTGACCTTGCACAAACAGGTACACACGTTCTCGTGCGACATCTGCTCGACAGAGTTCATGTTCAAGTCTCTGCTGTCGGCCCACCTGAAAACTCATTCCAAGAAACCCTTTAAGTGCGAGATCTGCTCACGGGGGTTTACAAAACAGGTACAGTTTGCAGCCCACACTAAGACCCACGAGAGTTCCCCCTGCTTCAAGTGTGGGTTCTGTGACCGCCTGTTCACCGAGTCGTCAACAATGCTGACCCACATTGAGGAACACCTGCAAAACACCTACAGGTGCGGCCTCTGTTCAAAAGGCTTCAAATTGTTTAACGATCtctcgttacatCTGCGTAGCCACTTCAAGGCTAAGAGCGGTGGTCAACGTGCCAAGAAAGCTGCTGTGGCCAACTTGTTTCTCGATCAGATGACCACAACTACAGACAAAATGCTAACAGGGGACACTGTTACCAATGGGGCAGATGGAGCCGTGGCTCCCGCAACTGGCACAGAAGGTAAGCCACGAAAAGTTCACCAGTGCGAGTACTGCAATGCGATTTTTAAAAGAAAACACCTTCTGACCACCCATCGGCGAATCCACACTGGTGATCGACCGTTTAAGTGCAGCTATTGCACCAAGGACTTCAGCCGCTACTATGCAATGGTGGCACATGAGAGATTGCACACAGGTGACCGCCCCTACAAATGTCTACACTGTGACAAGTCCTTCACAGTGTCCAGCCATCTGAATGTCCACCATAAGCTAAAGCATATAAACCTCCGTCCTCACAAATGCGAGCTCTGCGAGAAGGCCTATCGCAGCCCTGGGGAACTGCGTATTCATATGCGTTCACACACTGGTGACCGACCTTACTCTTGTGAACTGTGTGGCAAGTGCTATGCGACGCAATGCTCCCTGACAATCCACAAAAAGACCCACTCGCCAGATAAAAAACCCTATGTATGTGAACTGTGCGGCCTCTCCTACAAGCAACCGAGTAGCCTCGGGGTCCATATGCGGACATCTCACAGCGGCGACAAAGAGAAGAGGTATCAGTGTGAATTTTGCCAGAAGGGGTTCCACATTGCCGGTAGCCTGCTCCGCCACCGACGCATACATACGGATGAGCGGCCTTACGCGTGTGACCAGTGTGAAAAGTCCTTTCGGGAGTCGTCAGCCCTGAAGACTCACAAACGGCGCCAGCACCTGGGTGACCGTCCTTATGCCTGCGACTGTTGCAAAAAATCCTTCTGCACTCCCACGGACCTTGCACGTCACAAGAAGACCCACAAGGGTCTCATGGTTCTTTCCTCGCTGGCAGCCAGCATTGCCGAGAGCGAAATAAAAGTTTCAAAACCGGGCACCAAAATTCCGAGCGAGCCCACCTCCATGTCACTTATGGTGCCTGTCTCCATCTCGGACGCCTCTACCACGCTCGAAGAAATGTATGCAACTCATCACGTACAAGCAACTGCGGAGATTTCCCTGCCTCAAGAAATCACTTTACCCCAGGAAGTGTCTATTTCACGAGAAGTGACCGTTTCCCACGAGGTGCCTCTGCCCCAGGATATCACCGACGTGGCTCATGAAGTCCCCTTAGCCCATGAAGTTCAGCTTACCCAGGATGTGACTCTCTCCCAACCGTCCATTCCCTTGACCAATGACTCTATGGTTGCAGCAACCGTAGTTGTGACCGACCCGCAGCCTTCCGTGATCTCCTCGGCCATTGGACCCGTTACGTTCACGCTGCCCGTTCCTTCCCTCCATCAGACTGTAAACCTTAATCAACCGGTCACTTTAGCCAGTGAGGTTGCCCTTCACTTACCCCCTCAAATGTCTGTGACGCTGTCCACAGTAAACTCTTCCCCTGAACCAGTGTCCCCAACATCCCAGACGGTCACACTGCCGCAAGTCGTTCAGTCTCTTACGTAA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00448	SRP54	SRP54-type protein, GTPase domain	Domain	Interproscan
PF04086	SRP-alpha_N	Signal recognition particle, alpha subunit, N-terminal	Family	Interproscan
PF13912	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000897	Domain	Signal recognition particle, SRP54 subunit, GTPase domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR007222	Domain	Signal recognition particle receptor, alpha subunit, N-terminal	Interproscan
IPR011012	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR042101	Homologous_superfamily	Signal recognition particle SRP54, N-terminal domain superfamily	Interproscan
IPR050888	Family	Zinc Finger C2H2-type Transcription Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24406	TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005047	Molecular Function	signal recognition particle binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005785	Cellular Component	signal recognition particle receptor complex	Interproscan
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-