Gene detail

Detailed information of pred2_07935.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_07935.1	GALACTOSIDE 2-L-FUCOSYLTRANSFERASE	Sc3x4tf_8.1	3710471	3723505	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_07935.1

ATGGGAACAGATAAAACGTACCAGGCGATTAAGCAGAAATATTTCTGGCCTTGTTTGTTTAGAGAAGTAGTGGAATCTGTGAACAATTGTATATGGTGCCAGGCGAGGAACTTACAAAAGATTCAACCACACATGCAAGAATATGATATGCCATCTTTCCCATTCGCTAAGTTAGCTTTAGACATATCTGGCTCTTACCCACAGACCTTGTCCGGAAATCAATATATGGTGACATTCATCGACCAATATAATGGTTGGTCATTTGCAGTACCTAACAAAAAGGCAGAGACAGTAGCCCACCTGTTAATTGAAGGAATTATCCCGAGATTCGGTGCTCCACTCCAACTAGTAACTGATAACGGTCAAGAGAATATTAACAAGATTATGAAAAAGACATTAGAAGATTTAAACATACATCATACTGGGAATGAATCCGATATCCCGATCACCGAACGCCAAATCGTGATGCAACGAAGAATTGCGGACGAAGGCGATGCAACCTCAGAAGGAAATGAGGAAAGAGAGGGCAGTGATAAACACTCACCCAAAACCCAGAACAAATCAAACGAAGATAGCCTTACAGTATCTGACAGTGTAGAACCCATCGAGGTATGCACGAACAAAAGACGACAATACAATAGAAAATGTAAAATGTACAGGGTAATGAAGGACGGTGGTGACAAAAGAACTACAGAAGCTGACACGATAACTGAAGACAGTGATGAGGAAGGGAATACGGAAACTGACACGACCTCTGACGAAAGTATAGACAAAAGAGGTAAACATAAAAGGACTGACGATTGTAAAGTCCAGGAAAATGAGGGAAGACAAAACGAGAATCGAGACCGAGCTGGAAGATTGGAGGTTACCAACATTTTCCATAAACAGAACGAGATATCGCTATTACCATTTATGGGCGAAGCTCTAAGCTATCTGTTTGGTGTAGTTGCCGAGAATGACCTCAGAATAGTCAGGAAGGCTATGAGCCAGTTGGCTAATAAACAACAGCAACTGGTGCACATAGTGGAAGATAACGTGTTAGTAATAAGTAAACTAAGAAAAATATTTACTGACGTCCGCCGAGCTATAGACTATTTAGAATTGCAACTCAATATGTTATCGGTCGGTCGGCTATCACCGAGTATAACTACCCCGCACAACCTGAGAGAGCATCTAAATGAAATAGCTAAGTCATTACCTGATAACTATAAGTTATCAAATGATCCCGACCAGGACCTATGGTTTTATTACAAAACCTTGGACTGTACAACACTGTTCAACGATAAGTCTGTCGTAATCGTCGTAAGTGTTCCATTGTTGGACAGGGAACATTCCCAACTTCGAGCTGAGGGGAGAGATGAAAGCGGTAAACAAGGACGGTACATTCTGCTCGACCACGATGAAGCAGCACAATGCTCCGCAAGTACAAGCAATATCCCCATTTATATTACGAACCATAGGCAATGTTGTGAAATGTCCCTTTTTAGAGAAAGTGGGGCTGAGGTAGAAAGAAACTGCCAGATTAAAATTCAAACGAACACTCAGCTCCCTATGGCAATACGGATAGATCAGGGAACATGGATAGTCGCAACAAACATAGAGATAACATTCAGGGTACTGTCAGTAGAAATAGAAAATGGCTGTACCGCTTACAGCGACCTCATGGTGCTCACCGCACAAGTAAATGGGAACTCAGAATTCAGAAAAATAGACCAACAACAGTTCACGCCGATTAATATATCGAGTTCTACGGTTTGGTCTCCAGTAATAAGGACTTTCCCTAATTTCTCGGCTAACGCCATACCAGTCGAATTACAGGGAGGTGGCAGAAATTCCGGTCGAGAAATTGGTGTTAGCTTGGGCACAGTGTGCGTATTAGTTTTGATAGGGTTGTTAGGAAAATGGTGGTTTGGAAAGAGGGACTCAAAGAAACAGGAAGCTAATAAACAGGTGAACCTCGCAGTTTCAGTAGCAACTAGGAATACAAATGTCTTTCATGGATCAGCTGATATCATACCAGAGGAAGAGGCACCCACATCCACGTTATGCAAGGATTTAGGGGCAAACAGTAATTTTAAAGCTATAGAAGAAAATAAATTAAAGTGGAAAAAATTTTTGAAAATGGCGATTCTGTTGCTGGTGGTTACTTTCTTCTACTTCATCTTGAACATCTCCAGTATCCAAACATTCCTTAAGTATTTAAATCTTTCGCTTCCCCAAACCAATTTCGGTCCAAGACAATATTCTGCGCATCGCCCAACCAAAGTATCGTTCCGTCCAAGACAGTATCTCTGCTGCAAATTTATAGGACGAATTGGAAACCAAATGTTTATTTTTGCCTCCAACTACGGCATCGCCAAAGAAAAAAACATGACTTTGCTTTACGAAAAGCGTTTTCTGACTGCTTTTAAGATGCGGACAAAAAATAATGCTATCCACAATGTTAACAACTTCACGCTTTGTCGAAAGGCTGAACTGCGCATTTCGAAATTTTCTGCCAAGTATGACCCTGTGGTTAAACATATTGGCAGGGCACGTGTTTTACGTATAAACGGTTTCCTGCAATCATGGAAATATTTCAAACTTGCCGAAAAAGAATTAAGGGAATTATACACCTTTCAGCTTCACATTGTCCAAGAAGCGCAAATGTTTTTACAAGGAATCAGGGAGCAGCATTTTAGAAATAAATCCACACCAAATAACGTTACGTTTGTTGGAATTCATGTGCGGCGCGGTGACATGACAATATCACCTCGCGGTTTTATCGTTGCCCCAGCATCGTATTTCTTAAAGGCGATGACTGCTTTCAGAAAGAAGTTTCAGCACATAATCTTCGTCCTAGCAACTGATAGTTTTAAATGGTGCAAAGAAGAGTTGCCGAGCTCAATCCATATGACAGGAAAGGGCAATTCCGCGGCCTTGGATATGGCGATCTTATCCCTTTGTAATCACACCATCAGTTCTGTGGGAACATTTAGCTGGTGGTCAGCGTGGCTGGCCAATGGAATTGCAACGTATCACATGCCACCGGCAAGAGAAGGTTCAGGATTACGAAGTATGTACAGTAAAGATTATTCAGACTATTTCTGGCCTGGATGGATACCCATACGGGATGTGGATAAAGTGGATGATATACACATC

Transcript

pred2_07935.1

ATGGGAACAGATAAAACGTACCAGGCGATTAAGCAGAAATATTTCTGGCCTTGTTTGTTTAGAGAAGTAGTGGAAtctgtgaacaattgtatatggtgccaggcgaggaacTTACAAAAGATTCAACCACACATGCAAGAATATGATATGCCATCTTTCCCATTCGCTAAGTTAGCTTTAGACATATCTGGCTCTTACCCACAGACCTTGTCCGGAAATCAATATATGGTGACATTCATCGACCAATATAATGGTTGGTCATTTGCAGTACCTAACAAAAAGGcagagacagtAGCCCACCTGTTAATTGAAGGAATTATCCCGAGATTCGGTGCTCCACTCCAACTAGTAACTGATAACGGTCAAGAGAATATTAACAAGATTATGAAAAAGACATTAGAAGATttaaacatacaTCATACTGGGAATGAATCCGATATCCCGATCACCGAACGCCAAATCGTGATgcaacgaagaattgcggacgaaggcgatgcaacctcagaaggaaatgaggaaagagagggcagtgataaacactcacccaaaacccagaacaaatcaaacgaagatagccttacagtatctgacagtgtagaacccatcgaggtatgcacgaacaaaagacgacaatacaatagaaaatgtaaaatgtacagggtaatgaaggacggtggtgacaaaagaactacagaagctgacacgataactgaagacagtgatgaggaagggaatacggaaactgacacgacctctgacgaaagtATAGACAAAAGAGGTAAACATAAAAGGACTGACGATTGTAAAGTCCAGGAAAATGAGGGAAGACAAAACGAGAATCGAGACCGAGCTGGAAGATTGGAGGTTACCAACATTTTCCATAAACAGAACGAGATATCGCTATTACCATTTATGGGCGAAGCTCTAAGCTATCTGTTTGGTGTAGTTGCCGAGAATGACCTCAGAATAGTCAGGAAGGCTATGAGCCAGTTGGCTAATAAACAACAGCAACTGGTGCACatagtggaagataacgtGTTAGTAATAAGTAAACTAAGAAAAATATTTACTGACGTCCGCCGAGCTATAGACTATTTAGAATTGCAACTCAATATGTTATCGGTCGGTCGGCTATCACCGAGTATAACTACCCCGCACAACCTGAGAGAGCATCTAAATGAAATAGCTAAGTCATTACCTGATAACTATAAGTTATCAAATGATCCCGACCAGGACCTATGGttttattacaAAACCTTGGACTGTACAACACTGTTCAACGATAAGTCTGTCGTAATCGTCGTAAgtgttccattgTTGGACAGGGAACATTCCCAACTTCGAGCTGAGGGGAGAGATGAAAGCGGTAAACAAGGACGGTACATTCTGCTCGACCACGATGAAGCAGCACAATGCTCCGCAAGTACAAGCAATATCCCCATTTATATTACGAACCATAGGCAATGTTGTGAAATGTCCCTTTTTAGAGAAAGTGGGGCTGAGGTAGAAAGAAACTGCCAGATTAAAATTCAAACGAACACTCAGCTCCCTATGGCAATACGGATAGATCAGGGAACATGGATAGTCGCAACAAACATAGAGATAACATTCAGGGTACTGTCAGTAGAAATAGAAAATGGCTGTACCGCTTACAGCGACCTCATGGTGCTCACCGCACAAGTAAATGGGAACTCAGAATTCAGAAAAATAGACCAACAACAGTTCACGCCGATTAATATATCGAGTTCTACGGTTTGGTCTCCAGTAATAAGGACTttccctaatttCTCGGCTAACGCCATACCAGTCGAATTACAGGGAGGTGGCAGAAATTCCGGTCGAGAaattgGTGTTAGCTTGGgcacagtgtgcgtattagttttgatagggttgttaggaaaatggtggtttggaaagagggactcaaaGAAACAGGAAGCTAATAAACAGGTGAACCTCGCAGTTTCAGTAGCAACTAGGAATACAAATGTCTTTCATGGATCAGCTGATATCATACCAGAGGAAGAGGCACCCACATCCACGTTATGCAAGGATTTAGGGGCAAACAGTAATTTTAAAGCTATAGAAGAAAATAaattaaagtggAAAAAATttttgaaaatggcgattctgttgctggtggttactttcttctacttcatcttgaacatctccagtatccaaacattccttaagtatttaaatcttTCGCTTCCCCAAACCAATTTCGGTCCAAGACAATATTCTGCGCATCGCCCAACCAAAGTATCGTTCCGTCCAAGACAGTATCTCTGCTGCAAATTTAtaggacgaattggaaaccaaatgtttatttttgcctccAACTACGGCATCGCCAAAGAAAAAAACATGACTTTGCTTTACGAAAAGCGTTTTCTGACTGCTTTTAAGATGCGGACAAAAAATAATGCTATCCACAATGTTAACAACTTCACGCTTTGTCGAAAGGCTGAACTGCGCATTTCGAAATTTTCTGCCAAGTATGACCCTGTGGTTAAACATATTGGCAGGGCACGTGTTTTACGTATAAACGGTTTCCTGCAATCATGGAAATATTTCAAACTTGCCGAAAAAGAATTAAGGGAATTATACACCTTTCAGCTTCACATTGTCCAAGAAGCGCAAATGTTTTTACAAGGAATCAGGGAGCAGCATTTTAGAAATAAATCCACACCAAATAACGTTACgtttgttggaattcatgtgcggcgcggtgacatgacaatatcacctcgcggttttatcgttgccccagcatcgtatttcttaaaggcgatgactgctttcagaaagaagtttcagcacataatcttcgtcctagcaactgatagttttaaatggtgcaaagaagagttgccgagctcaatccatatgacaggaaagggcaattccgcggccttggatatggcgatcttatccctttgtaatcacaccatcagttctgtgggaacatttagctggtggtcagcgtggctggccaatGGAATTGCAACGTATCACATGCCACCGGCAAGAGAAGGTTCAGGATTACGAAGTATGTACAGTAAAGATTATTCAGACTatttctggcctGGATGGATACCCATACGGGATGTGGATAAAGTGGATGATATACACATCTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01531	Glyco_transf_11	Glycosyl transferase family 11	Family	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR002516	Family	Glycosyl transferase, family 11	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11927	GALACTOSIDE 2-L-FUCOSYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006486	Biological Process	protein glycosylation	Interproscan
GO:0008107	Molecular Function	galactoside 2-alpha-L-fucosyltransferase activity	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0036065	Biological Process	fucosylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-