Gene detail

Detailed information of pred2_07498.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_07498.1	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3	Sc3x4tf_233	2690487	2618046	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_07498.1

ATGGCTGAAGTGTCTATTAAGTTTTTGGATCAGAAATCTTTACGGGAAAAACTAAGTCTATGGGATGCCAATGTTGACCCCAAAGCCCAGCTAACTGACCGACAGAAGGACATTCTCATAGAAGTGTCAAGTCAGGCCCAGCTTAGACCTCTACCGATTGAGTTGCCTTTGGATGATGTTCCAACGCCGCAGCTGGCTGCGAAAGAGGACAACACACCAACTGACACTGAATCCATGGTCTTTTTGAAAGGGTCAGAATTTGGGGAAAAAATAGAAAATGCACAGCAGTTCTTTTCCTGGTTTGCTGAGATTGAAGAAAACATCTCTAAAGAAGAAGAAGTCCCATACAGGAATTACATTTTGGAGCTGGAAGACTACAAAAAGCAGTGCCAGGATGTGTTGCAAGAGGTTACTGATGCAATTACTTATCTGAACAACTTACAGGAACAATATATTTTAGTATCATTCAAGACTAATGCCCTTCATGAAGCATGTGAACATCTTCTGGCTAAACAGAAACTTGGTTCTCCTGCATTTTCTGTAACAAATGATTCCTTTGTTCCCATGTTGGCTCGACTTGATGAATGTATTTTGTACATTGCCAGCAACCCCCGTTACAAAGAATCTCAAGTTTATTTGGCTCGATTCAAACAGTGTCTATCTCGAGCTCTCACCCTCATCAAAAGTCATGTGATTACCATTCTGCAGAATGCCTCTCAGCAGGTACTGCCAAGGAAGGATACGCCTAATGCAGGAGATGATGCCTTTACTTTGTTTTATGGAAAATTCCGGGCCAATGCACCTCGTGTTCATGCTTTGATGGAACAGTTGGAACAACGAATTAACAAATCACAAGAGTACAATCAGATTTTGAATGACTGCCATCAGTGTTATTTTTCTCAGCGTGAACTTCTGTTGGGACCAAGTGTCGAATCAACGATAGCTGATTTGGCAACTCGATACCAGAGAGATCATTGTGCCTTGATGCGTAGTGGTTGTGCTTTCATGGTGCATGTATGTGAAGATGAATACCAATTATATTTCAACTTCTTCTCCAAACCATCCCCTCAACTGGATGAAATGCTGGAGAAACTTTGCACGTACCTCTACGATGTATTCCGCCCTTTGATTATACATATCAACCATTTGGAAACTTTAGCTGAACTTTGTGCAATATTAAAGGAACTGAAGGCTTTTGAGAATGTCTGTGATCAGATGTTAATGGATGTGCAGGAGCGTCTAGTTTATCGTACTTATATCTACATAAAAAATGACATCTTCATGTACAATGCGGCTTCAGGAGATTTGGCTTATCCAGAGAAACTGGAAATGATGGAAAGCATATCTGAGACTATCAGAAAAGACAAGGGTCATTCACGTAATGCTTCCAATGCTTCGAGTACAAGCATGGAAGTGGCTCAGATAACAGCAGCAGAGATCGGGAGTGATATCAAAGAAGAAGAAGAAGATTCCATCACAGATGCAGTAGCCTTTACTATGGATGCTAATACATCCAGCATGCCTATGTCCCCTGCTGACCTCCATGGTATGTGGTACCCAACTGTACGTCGAACGTTAGTCACCTTATCTAAACTGTACAGATGCATTGATCGCACTACATTCCAAGGCCTTTCCCAAGAAGCTCTTCAGTCCTGCATTCAGAGTTTATTGGTTGCAAAAGAAGGAATCATCAAACGTAAAGCCCTCCTTGATGGTCAGATGTTCATGATAAAGCATTTGCTGATTTTAAGGGAACAAATTGCTCCATTCCACGCTGAGTTCAGTATCAGGGAGACGTCTTTGGATTTCAGCAAAATGAGATATGCTGCTTACAGTCTTTTTACGAAGAAATCACAATTGTTTGCTTTAAACAGCAACAATGCATTGTTACAGTTTATTCTTGACGGCACACCGCAAGTCACAGAGCATTTTGTTGATTCTAAGAAAGATGTCGATGCTGAGCTGAAAAAGAATTGTGAAGAATTCATACGTCATATCACGGATTATTTCACTGAACCACTCAAGTCTTTCCTGTCTAAGGCCAATGTCATAGTGAATATGAACAAAGAAGAAGGCGTCCATAAAGTGTCTCTACGGAACCAGCCATTTGCAGTGGTGGAGAAATTACATGATGTTGTTGCTGAAAGTTATAAAAACCTCAAAACCAGGCTCCCTGTTGTCCGACGTAGTATGACCCTCTATTTAGCCAATAAAGACACTGAATACATTCTGTTCAAGCCAATTAAGATCAACCTGCTGCTGTCTGCCACAAAAAAAGATAAAGAACAAAATTGTATCTTTGTATTAATTTTTGCCTATATGAAAAAAATGGGATCAGGACCGATTGAACGGCTTCGGCAGCTGGAACTGATTGAACGAGAAATAGCCACTGCAATCCACAGTTCAGGGCAAGCTCTGCAGGAATTGTCCAAAGATAAGCCAAGCATGAAACAAGTGGAGAGTCACACAACAAACTTCATCAAAACTCTTGAAGGAGTTGAGAGCGGACTCACAAAGCAGATCAACTACCTTACCCAAGTGTCTACAGGTCAACCACATGAAGGTTCGTGTTATGCTGCCCAAAAAGATCTTCTCATGGCAATGCACAGAGTGGAACACGTCAAGAGTCGACTGAATGAACTTGAAAAGATCCACAATGAACATATACGGGGTTCACTTGCCTCCAACGCTTCCGCAGCCTCTTCGCAACCAGGATCCGGCTTGAGACGCGCATTTCTGTCTCAATCTCAGAAA

Transcript

pred2_07498.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04136	COG3_N	Conserved oligomeric Golgi complex subunit 3, N-terminal	Repeat	Interproscan
PF10280	Med11	Mediator complex protein	Family	Interproscan
PF20671	COG3_C	Conserved oligomeric Golgi complex subunit 3, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007265	Family	Conserved oligomeric Golgi complex, subunit 3	Interproscan
IPR019404	Family	Mediator complex, subunit Med11	Interproscan
IPR048320	Domain	Conserved oligomeric Golgi complex subunit 3, N-terminal	Interproscan
IPR048685	Domain	Conserved oligomeric Golgi complex subunit 3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13302	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0005801	Cellular Component	cis-Golgi network	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0007030	Biological Process	Golgi organization	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0017119	Cellular Component	Golgi transport complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-