Gene detail

Detailed information of pred2_04535.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_04535.1	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Sc3x4tf_1013	77890	38533	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_04535.1

ATGTTGCTTGGCGCGAAAAAAAGCAGCTTGCGTTATTTCAACTATTTTCTATTGAGCATTGCAATCAAGACCACCATTGCCCATTTGCTGAAAGTTGTTAATGACCCACTCACAGCACGGATCATGATGGAAATTACATCAATCTATATTTCAATGTCTAGAGCCCAAAAATATCGTCTTGCTAGTCAGAGAACCACATTCAAGGCCTATGTTGCTATTGGTGACCACAATGGACATGGTGTAAAATGCTCCAAAGAAGTTGCCACAGCTATCAGAGGTATCATTGTCCTTCTGTTAGATGAAGATACTGGGGTAACAAAATTGGTTGCTGGACAGCGTGGTAGTGTAGCAGTAAGCCTGATCCCTGCCCCATGTGGCACTGGAATTGTCAGTATTGATGTCTACACCCATGCAAGAGGTAACACAGCCACTCAGGATAACTTTGCCAAAGCCACTTACAATGCCATTGCTCAGACTTATACCTATCTGACACCGGAATATTCTGATCATCTAGCCAAAACTCCTGCCAAATTGCCAGTCCCAAGAAATTTTGGCCCGGTAGAAGTTCCTCCTGCTCCTGAATCTGTGGCCACATACTCTGTGAATGGACCAAGATTGATGATCACTCACATTGAAAATTACTTTTTTAAATCCTATGCCAACACACAGATCATTGGACCCTTTCACAAGAGTTTTACCTCCATTGTTGGCCCAAATGGCAGTGGCAAATCAAATGTCATTGATTCAATGTTGTTTGTGTTTGGTTATCGTGCTAACAAGATCCGCTCAAAAAAGATAAGTGTCCTTATACACAGCAGTCAGCAGTATCAAAATGTTGAGAGCTGCACAGTTAGTGTCCACTTCCAGAAAATCATAGACACTGGCCCTGGAGATGAAGATTATGAAGTAGTCCCAAATTCCAAATTTGTAGTAGCCCGCACAGCATTTAAGGACAATAGCTCCTATTACACTGTGGATGGAAAACGCAAAACTTACAAAGAAGTGGCAACTCTACTGAGAGCCAGTGGCATTGATCTCGATCATAACAGATTCCTGATCCTTCAGGGTGAAGTTGAACAGATTGCAATGATGAAGCCCAAGGCCCAAACAGAGCATGATGAAGGGATGTTGGAATTTCTGGAGGACATCATTGGCAGCAGTCGATTTAAGGAGCCAATTGAAATTATGGCCAAGCGAGTGGAGATTCTAAATGGATTGCGTGGAGAAAAGCTCAACCGTGTGAAAGCTGTAGAAAAAGAAAAGGATGATTTGGAAGGTGCAAAGAATGAGGCTGAAGAGTTTTTGAGCACTGAGAACAGTATCACGCTTTTGAATAACAAACTATACCAAGGATACTTATCTGTTTGTGTAAACAATGAATCTAAGGCATCTGCAGATTTGAAAGAACTTCAGGATAAACTGAATGAGGAGGGCAAGAAACTAAAAGAAGTTGTTGATGAGAAATCTGCAAAGACAAAGGACTATAACAAAGCATACAAGGAATATGAGTCACTTGTGAAAAAGAGTGATGGTTTGAAGGAGCAATTCAGAGAGCTTGAAAGCCAGGATGTGAAATGTAGAGAGGATCTTAAGCACACAAAAAACAAGGATAACAAATTACAGAAAACCATTCAACAAGAAAAAAAACATATTGAAGAACTTGAGTCTATCCCAGCACAGGCAGAGAAGGTGATTGAGGATGCCAACAAAAAACTTGAAAACCTTGAAACAAAAAAGAAGGAAGAAGAGAAGAAACTGCAAGAAGTTATTGAGAGTTTGAAAACAGAAACTAAGGGTCTTCAAGAAGAGAAAGACAAACAGGAAGAAAAACTATTGGCCATGCAAAAAACGGTTAATGAAACTAAATCTCAGTATAATGTGGCCCAGTCTGAACTTGATATTTATCTGAGCAACCAACAGAATGAACAATCAAAGCTCAATGAGATGATGAGAAACCTGAACAAAACAACTGCAACCTTGAAGGAGCGACAGACTCAATTAGTGGATTTGGAGAAGAAGATTCCTGCTACAAAGCTAAATTTGGAAAAATCAAAAAGAGAATTGGAATCCATTACAGATGTGGAAGAAAAATCAAGCAATGAGATGAAAACTGCACGTGTGAAGGTAGAAGAATTGAAAATGTCAATGCAGGCAGCAAAAAGCAAAGGAAAACTTCTTGATTCACTGATGGCACAAAAGAGAAGTGGTAAACTGCCAGGAATCTATGGCAGATTGAATGCTACCATGCTTTTACAT

Transcript

pred2_04535.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00333	Ribosomal_S5	Ribosomal protein S5, N-terminal domain	Domain	Interproscan
PF02463	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003395	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR013810	Domain	Small ribosomal subunit protein uS5, N-terminal	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18937	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000799	Cellular Component	condensin complex	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0007076	Biological Process	mitotic chromosome condensation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-