Gene detail

Detailed information of pred2_01000.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_01000.1	DNA-DIRECTED RNA POLYMERASE	Sc3x4tf_283	5338844	5414534	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_01000.1

ATGATATGGAAAGTCTCCACAACATCAATAAAAGCAATTGAAGCTTCTTATGAAGTGTCTTTGCTTTTAGCTAAAGCCAAAAAGCCATTCACTGAAGACCTATTACTTCCGGCTGCTGTTCTATTGGCTAAGACTATACTGGACAAAAACGTATCAGATAAATTAAAAACTCTGCCTTTGTCAAATGACACCATTTGCCACAGAATAGATACAATGGGAATAGACATTGTTGATCAAAACGTGGTAACCAAGGAATGCAAATACGTTGCTAATGAGCACCGCTCTCTAGTGTTCCACTGCGGAAGTCGTCGGATATTTACAACCATGTCTGAGGGTGTAACAAAAGCCGTGGCACCAACCCGACAAGCCTCCAGGAGAACTCCCGGCAGGCTCTATGCTAAAGCTGTATTCACTGGATACAAGCGAGGTCTCCGAAACCAATATGAGCACACTGCTCTTTTGAAAATTGATGGTGTTTTAACCAGAAAAGAAGTCGATTTCTATCTTGGCAAAAAGTGTGCCTATGTGTACAAAGCCAAAAGGAAGACCAATGTTCCCGGCACAAAAGATGCCAGCCATATCCGAATTATTTGGGGCAAAGTAACTCGTCCTCATGGTAACAGTGGAGCTGTTCGTGCTAAGTTCAGGAAGAACTTGCCATCAAGAGCCATTGGCAGACGTATCAGAGTTGTACAGGCACATCTCTGCGGAAAAGGTGGAACCATCATGAATTTATCAGGCGATAAAATTGAACAAAGAATGAAGAATAGCTGGTCTTCTATAGTAAGAGGTGAGTGGAAGGTGATGGCTGGTCGAAATTATCGTTTGTTGGAAATGGGTTTTGTCAAGTTCCAAGATGAAATCCATGTGACCTTCGGACTGATGAGCAAAAATCAGATGCAGCAAGCATCTCATATTCATGTTGTTTGCAATGATCTCTATAGCCAAGGTGGAGGCCGCAAACCAGTTCCACATGGAGTCCTTGATCACAGGATGGGCACAAGTGAACGAGACAACAACTGTGAAACTTGTGGTAAATGCTTGGCTGATTGCACTGGGCATTTTGGTTACATTGACCTTGAACTTCCCGTCTTTCACATTGGATATTTTAGAGCCATTATTACCATTCTTCAAATGATCTGCAAGACATGTAGTCGAGTGTTGCTTCCAGTGGCTGAAAGAGCTGCCTTCATTGAAAGTGGACGCAATCCAAATATGACTTATTTACAGCGCAAGAACCTCAAGAAGAAAACTCTTGCTCGCTGCAAGAAAATAAACAAATGTGCCTACTGTCATTCTTTCAATGGTATGACAAAGAAGATAGGTATGTTGAAAATTGTACATGACAGGTTCAAAACTCCAAGAAAGGACAATGATCCTGTCATCACAGATTATCTGCTCTCATTTGAGGCTTCCAAGGAAAATAATAAAGAATTAGAAAGCTTGCTAACTAAAACACAGGAAATTCTCAGTCCATTAACAGTGCTAAAGTTGCTTGAAAGAATTCCTGAGGAAGATATCCCATTGCTTGTGATGAACCCAGACGTTGGTAAACCCAAAGACTTAATCTTAACCCGCATCATGTGCCCTCCTCTCTGTATCCGTCCATCAGTGGTTTCTGATCTCAAGTCTGGAACGAATGAAGATGACATTACAATGAAATTAACAGAGATTATCTTCATGAACAATGTCATTCAAAAACACAAGGCAACTGGAGCAAAGATGCAAATGATTATGGAAGATTGGGATTTTCTCCAACTTCAAGTTGCTTTGTTGTATAACAGTGAAACTTCAGGAATTCCTCTTCACATGCAACCCAAAAAGTTTACACGAGGTTTTGTACAGCGTCTGAAAGGAAAACAGGGGCGTTTCCGAGGAAATCTGTCTGGAAAAAGAGTGGACTTCTCTGGCCGTACAGTCATTTCTCCTGACCCCAACATGAGGATTGACCAGGTGTCTGTCCCAATTCATGTGGCGAAGATTCTGACCTATCCAGAACGTGTGAATCAGGCCAACAAGTCTATGTTGAAGAAAATGGTAACCAATGGACCAGATGTTCATCCAGGGGCCAACTTTATTGAGCAAAGAGGCACAAAGGTCAAAAAATTTCTGCGCTATGGCAACCGGATAAAAATGGCTAATGAATTGAGGTTTGGTGATGTTGTGGAACGGCACATGATTGATGGTGACATTGTGCTCTTCAACCGACAGCCATCCCTTCACAAACTCAGTATCCAAGCATTTTTTGCTAAAGTTATGCCACATCGTACATTCCGTTTTAATGAATGCTGTTGTGGACCATTCAATGCAGATTTTGATGGCGATGAAATGAATTTACATTTACCTCAAACCGAAGAAGCTAAAGCAGAAGCACTTGTACTGATGGGTTCAAAATCTAATATTATCACTCCCAGAAATGGAGAACCCTTAATTGCTGCTATTCAAGATTTTATCACTGGTGGTTACCTCATCACTCAAAAAGATGTCTTCTTTGACCGAAGTCGAGCAGCACAGCTCATTGCTTCTATTCTTGCATACAATGACCAAGATATCAGGATTGATCTGCCCCCTCCAGCTATATTCAAGCCGTGTAGGCTTTGGACTGGAAAACAGATCTTTAGTATGCTGTTAAGACCCAACACCAGTTGTCCAGTTTTAGCCAATTTACGTGCGAAAGGCAAGAATTATTCCAGTGGAGAAGATTTGTGTATCAATGATTCATTTGTAGTGATCCGTAACAGTGAACTGCTATGTGGTGCTATGGATAAGGCCACTCTGGGATCAGGTTCTAAAAATAATATCTTTTATATCATTCTGCGTGATTTTGGAGAGGAACATGCATCAAGCACTCTATCCAGACTTGCAAGGCTCTGCCCAGCGTTTTTATCAAATCGAGGTTTCTCAATTGGAATTGGTGATGTTACACCTGGACTTGGGCTTATCAATGCCAAAAACAAGCTCTTAGATAATGGCTATTCCAAATGTGATGGCTACATTGCAGACTTGAATGAAGGCAAATTGACAACTCAGCCAGGTTGTTCTGAGGAGGAAACCTTAGAGGCAATGATACTTAAAGAACTCTCTCTCATTCGAGACCATGCTGGAAAAGCATGTCTACAGGAACTTCACAAAAGTAACAGCCCTTTAAACATGGCTATTTGTGGCTCAAAAGGTTCCTTTATTAATATTTCTCAGATGATTGCCTGTGTGGGTCAGCAGGCTTTGGGAGGCAAAAGAGTTCCAAATGGTTTTGAAGACAGAGCTTTGCCACATTTCCCTAGACATTATTTGTGCTCTCAGTATGATTTGACAGTAAGAAACTCTACAGGTGAAATCGTTCAGTTTCTGTATGGAGGAGATGGCCTTGATCCAGCAGCAATGGAAGGTAAAGACAGGCCAGTTGACTTCAAGAGAGTCTTGGATCATATAAAAGCTTTAACATCATATGAGTGCAAAGATGAACCAGCTTTGAGCAGTGAGGAACTGATGGAATTGGGAGAAAACCTTTTGGAACAACCAAGATACAAAGGTGATTTCAGGGAAGACTTTCAGCAAGAACTTAAAGATTTCCTAAATTCAGTTTGTGGCAGACTTGCTAAAGTCTGGGGACTCCATAACATGGATTCCTTAAACAGAGAAGATAGATCAGTTTTGTTTCAACTGGATCGAATTACAAAAACACAGTTTCAAAGATTTTTGGAGTGTTGTCGTCACAAGTATTTAAGATCAAAGATTGAACCAGGAACTGCTGTTGGAGCTGTTTGTGCTCAAAGTATTGGTGAACCAGGAACGCAAATGACACTCAAGACCTTTCACTTTGCTGGGGTCGCTTCTATGAACATCACTCTCGGTGTTCCTCGCATTAAGGAAATTATCAATGCCACAAAGAATATCAGTACACCAATTATTTCTGCTCAGTTGGATGTTGACGATGACCCTGAAACTGCAAGACGAGTTAAAGGTCGAATAGAGAAAACGCTTCTTGGTGAGGTTTCAGAATATGTGGAAGAAGTTTATTTGCCAGACGATTGTTTTTTACTTGTCAAACTGGATCTTGACAGAATCAAGCTTCTCAAGCAAATTCAAACACACAGTTCATCAGTGATCACTATCTCTCCCCAGGAAACTGCCAAAAGTTCCATGTATTATGTAATGCAAATGTTGAAAAAAGAGATTCCTGTAGTAATGATAAAGGGTATACCTTCAGTAACAAGAGCTGTCATTCACCATGATGAGAAGAAGGCAAACCGCTACAAATTGTTAGTTGAAGGAGATAATCTTAGAGCTGTCATGGCTACCCCAGGTGTCAATGGTGGTCGTAGCACTTCAAACAACACTTGTGAAGTAGAGAAGACTCTTGGTATAGAAGCAGCACGGACAACCATCATTGATGAAATTGTATATACCATGGTAAATCATGGAATGAGCATTGATATCCGCCATGTTATGTTGCTGGCTGATTTAATGACTTGTCGAGGAGAAGTCCTTGGTATCACCCGCTTTGGTTTGAGTAAAATGAAGGAGAGTGTTCTTATGCTTGCTTCTTTTGAAAAAACTGCTGATCATTTATTTGAGGCTGCCTTCCATGGACAAAGAGATGCCATTACAGGTGTCAGTGAGTGCATCATTATGGGCATTCCAATGAGCATAGGTACTGGAGTCTTTAAACTATTGTACAAATATCCTTTTTACCTCAACATTAGCAATGTTCACATTGCCATCTTGAAATAT

Transcript

pred2_01000.1

ATGATATGGAAAGTCTCCACAACATCAATAAAAGCAATTGAAGCTTCTTATGAAGTGTCTTTGCTTTTAGCTAAAGCCAAAAAGCCATTCACTGAAGACCTATTACTTCCGGCTGCTGTTCTATTGGCTAAGACTATACTGGACAAAAACGTATCAGATAAATTAAAAACTCTGCCTTTGTCAAATGACACCATTTGCCACAGAATAGATACAATGGGAATAGACATTGTTGATCAAAACGTGGTAACCAAGGAATGCAAATACGTTGCTAATGAGCACCGCTCTCTAGTGTTCCACTGCGGAAGTCGTCGGATATTTACAACCATGTCTGAGGGTGTAACAAAAGCCGTGGCACCAACCCGACAAGCCTCCAGGAGAACTCCCGGCAGGCTCTATGCTAAAGCTGTATTCACTGGATACAAGCGAGGTCTCCGAAACCAATATGAGCACACTGCTCTTTTGAAAATTGATGGTGTTTTAACCAGAAAAGAAGTCGATTTCTATCTTGGCAAAAAGTGTGCCTATGTGTACAAAGCCAAAAGGAAGACCAATGTTCCCGGCACAAAAGATGCCAGCCATATCCGAATTATTTGGGGCAAAGTAACTCGTCCTCATGGTAACAGTGGAGCTGTTCGTGCTAAGTTCAGGAAGAACTTGCCATCAAGAGCCATTGGCAGACGTATCAGAGTTGTACAGGCACATCTCTGCGGAAAAGGTGGAACCATCATGAATTTATCAGGCGATAAAATTGAACAAAGAATGAAGAATAGCTGGTCTTCTATAGTAAGAGGTGAGTGGAAGGTGATGGCTGGTCGAAAttatcgtttgTTGGAAATGGGTTTTGTCAAGTTCCAAGATGAAATCCATGTGACCTTCGGACTGATGAGCAAAAATCAGATGCAGCAAGCATCTCATATTCATGTTGTTTGCAATGATCTCTATAGCCAAGGTGGAGGCCGCAAACCAGTTCCACATGGAGTCCTTGATCACAGGATGGGCACAAGTGAACGAGACAACAACTGTGAAACTTGTGGTAAATGCTTGGCTGATTGCACTGGGCATTTTGGTTACATTGACCTTGAACTTCCCGTCTTTCACATTGGATATTTTAGAGCCATTATTACCATTCTTCAAATGATCTGCAAGACATGTAGTCGAGTGTTGCTTCCAGTGGCTGAAAGAGCTGCCTTCATTGAAAGTGGACGCAATCCAAATATGACTTATTTACAGCGCAAGAACCTCAAGAAGAAAACTCTTGCTCGCTGCAAGAAAATAAACAAATGTGCCTACTGTCATTCTTTCAATGGTATGACAAAGAAGATAGGTATGTTGAAAATTGTACATGACAGGTTCAAAACTCCAAGAAAGGACAATGATCCTGTCATCACAGATTATCTGCTCTCATTTGAGGCTTCCAAGGAAAATAATAAAGAATTAGAAAGCTTGCTAACTAAAACACAGGAAATTCTCAGTCCATTAACAGTGCTAAAGTTGCTTGAAAGAATTCCTGAGGAAGATATCCCATTGCTTGTGATGAACCCAGACGTTGGTAAACCCAAAGACTTAATCTTAACCCGCATCATGTGCCCTCCTCTCTGTATCCGTCCATCAGTGGTTTCTGATCTCAAGTCTGGAACGAATGAAGATGACATTACAATGAAATTAACAGAGATTATCTTCATGAACAATGTCATTCAAAAACACAAGGCAACTGGAGCAAAGATGCAAATGATTATGGAAGATTGGGATTTTCTCCAACTTCAAGTTGCTTTGTTGTATAACAGTGAAACTTCAGGAATTCCTCTTCACATGCAACCCAAAAAGTTTACACGAGGTTTTGTACAGCGTCTGAAAGGAAAACAGGGGCGTTTCCGAGGAAATCTGTCTGGAAAAAGAGTGGACTTCTCTGGCCGTACAGTCATTTCTCCTGACCCCAACATGAGGATTGACCAGGTGTCTGTCCCAATTCATGTGGCGAAGATTCTGACCTATCCAGAACGTGTGAATCAGGCCAACAAGTCTATGTTGAAGAAAATGGTAACCAATGGACCAGATGTTCATCCAGGGGCCAACTTTATTGAGCAAAGAGGCACAAAGGTCAAAAAATTTCTGCGCTATGGCAACCGGATAAAAATGGCTAATGAATTGAGGTTTGGTGATGTTGTGGAACGGCACATGATTGATGGTGACATTGTGCTCTTCAACCGACAGCCATCCCTTCACAAACTCAGTATCCAAGCATTTTTTGCTAAAGTTATGCCACATCGTACATTCCGTTTTAATGAATGCTGTTGTGGACCATTCAATGCAGATTTTGATGGCGATGAAATGAATTTACATTTACCTCAAACCGAAGAAGCTAAAGCAGAAGCACTTGTACTGATGGGTTCAAAATCTAATATTATCACTCCCAGAAATGGAGAACCCTTAATTGCTGCTATTCAAGATTTTATCACTGGTGGTTACCTCATCACTCAAAAAGATGTCTTCTTTGACCGAAGTCGAGCAGCACAGCTCATTGCTTCTATTCTTGCATACAATGACCAAGATATCAGGATTGATCTGCCCCCTCCAGCTATATTCAAGCCGTGTAGGCTTTGGACTGGAAAACAGATCTTTAGTATGCTGTTAAGACCCAACACCAGTTGTCCAGTTTTAGCCAATTTACGTGCGAAAGGCAAGAATTATTCCAGTGGAGAAGATTTGTGTATCAATGATTCATTTGTAGTGATCCGTAACAGTGAACTGCTATGTGGTGCTATGGATAAGGCCACTCTGGGATCAGGTTCTAAAAATAATATCTTTTATATCATTCTGCGTGATTTTGGAGAGGAACATGCATCAAGCACTCTATCCAGACTTGCAAGGCTCTGCCCAGCGTTTTTATCAAATCGAGGTTTCTCAATTGGAATTGGTGATGTTACACCTGGACTTGGGCTTATCAATGCCAAAAACAAGCTCTTAGATAATGGCTATTCCAAATGTGATGGCTACATTGCAGACTTGAATGAAGGCAAATTGACAACTCAGCCAGGTTGTTCTGAGGAGGAAACCTTAGAGGCAATGATACTTAAAGAACTCTCTCTCATTCGAGACCATGCTGGAAAAGCATGTCTACAGGAACTTCACAAAAGTAACAGCCCTTTAAACATGGCTATTTGTGGCTCAAAAGGTTCCTTTATTAATATTTCTCAGATGATTGCCTGTGTGGGTCAGCAGGCTTTGGGAGGCAAAAGAGTTCCAAATGGTTTTGAAGACAGAGCTTTGCCACATTTCCCTAGACATTATTTGTGCTCTCAGTATGATTTGACAGTAAGAAACTCTACAGGTGAAATCGTTCAGTTTCTGTATGGAGGAGATGGCCTTGATCCAGCAGCAATGGAAGGTAAAGACAGGCCAGTTGACTTCAAGAGAGTCTTGGATCATATAAAAGCTTTAACATCATATGAGTGCAAAGATGAACCAGCTTTGAGCAGTGAGGAACTGATGGAATTGGGAGAAAACCTTTTGGAACAACCAAGATACAAAGGTGATTTCAGGGAAGACTTTCAGCAAGAACTTAAAGATTTCCTAAATTCAGTTTGTGGCAGACTTGCTAAAGTCTGGGGACTCCATAACATGGATTCCTTAAACAGAGAAGATAGATCAGTTTTGTTTCAACTGGATCGAATTACAAAAACACAGTTTCAAAGATTTTTGGAGTGTTGTCGTCACAAGTATTTAAGATCAAAGATTGAACCAGGAACTGCTGTTGGAGCTGTTTGTGCTCAAAGTATTGGTGAACCAGGAACGCAAATGACACTCAAGACCTTTCACTTTGCTGGGGTCGCTTCTATGAACATCACTCTCGGTGTTCCTCGCATTAAGGAAATTATCAATGCCACAAAGAATATCAGTACACCAATTATTTCTGCTCAGTTGGATGTTGACGATGACCCTGAAACTGCAAGACGAGTTAAAGGTCGAATAGAGAAAACGCTTCTTGGTGAGgtttcagaatatgtggaagaagtttatttgccagacgattgttttttacttgtcaaactggatcttgacagaatcaagcttctcaagCAAATTCAAACACACAGTTCATCAGTGATCACTATCTCTCCCCAGGAAACTGCCAAAAGTTCCATGTATTATGTAATGCAAATGTTGAAAAAAGAGATTCCTGTAGTAATGATAAAGGGTATACCTTCAGTAACAAGAGCTGTCATTCACCATGATGAGAAGAAGGCAAACCGCTACAAATTGTTAGTTGAAGGAGATAATCTTAGAGCTGTCATGGCTACCCCAGGTGTCAATGGTGGTCGTAGCACTTCAAACAACACTTGTGAAGTAGAGAAGACTCTTGGTATAGAAGCAGCACGGACAACCATCATTGATGAAATTGTATATACCATGGTAAATCATGGAATGAGCATTGATATCCGCCATGTTATGTTGCTGGCTGATTTAATGACTTGTCGAGGAGAAGTCCTTGGTATCACCCGCTTTGGTTTGAGTAAAATGAAGGAGAGTGTTCTTATGCTTGCTTCTTTTGAAAAAACTGCTGATCATTTATTTGAGGCTGCCTTCCATGGACAAAGAGATGCCATTACAGGTGTCAGTGAGTGCATCATTATGGGCATTCCAATGAGCATAGGTACTGGAGTCTTTAAACTATTGTACAAATATCCTTTTTACCTCAACATTAGCAATGTTCACATTGCCATCTTGAAATATTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00623	RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	Domain	Interproscan
PF01247	Ribosomal_L35Ae	Ribosomal protein L35Ae	Domain	Interproscan
PF04983	RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	Domain	Interproscan
PF04997	RNA_pol_Rpb1_1	RNA polymerase Rpb1, domain 1	Domain	Interproscan
PF04998	RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	Domain	Interproscan
PF05000	RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000722	Domain	RNA polymerase, alpha subunit	Interproscan
IPR001780	Family	Large ribosomal subunit protein eL33	Interproscan
IPR006592	Domain	RNA polymerase, N-terminal	Interproscan
IPR007066	Domain	RNA polymerase Rpb1, domain 3	Interproscan
IPR007080	Domain	RNA polymerase Rpb1, domain 1	Interproscan
IPR007081	Domain	RNA polymerase Rpb1, domain 5	Interproscan
IPR007083	Domain	RNA polymerase Rpb1, domain 4	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR018266	Conserved_site	Large ribosomal subunit protein eL33, conserved site	Interproscan
IPR035697	Domain	DNA-directed RNA polymerase III subunit RPC1, N-terminal	Interproscan
IPR035698	Domain	DNA-directed RNA polymerase III subunit RPC1, C-terminal	Interproscan
IPR038120	Homologous_superfamily	RNA polymerase Rpb1, funnel domain superfamily	Interproscan
IPR038661	Homologous_superfamily	Large ribosomal subunit protein eL33 superfamily	Interproscan
IPR042102	Homologous_superfamily	RNA polymerase Rpb1, domain 3 superfamily	Interproscan
IPR044893	Homologous_superfamily	RNA polymerase Rpb1, clamp domain superfamily	Interproscan
IPR045867	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001056	Molecular Function	RNA polymerase III activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0006412	Biological Process	translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-