Gene detail

Detailed information of mRNA.BJAM.scaffold8172.19863 in Bathynomus jamesi Gene info

Gene ID	Annotation	Contig	Start	End	Strand
mRNA.BJAM.scaffold8172.19863	TRANSCRIPTION INITIATION FACTOR TFIID	scaffold8172	45260	76719	+

Gene Structure

More details in Jbrowse Sequence

CDS

mRNA.BJAM.scaffold8172.19863

ATGAACAAATTCTCTAGAGGAAACCGATTTTCAATTGCGGAACACCAGGAAAGGTACAAGGAAGAGTGTCAAAGGGTTTTTGACCTGCAGAACCGGGTTCTTGCCTCTGAAGAAGTTCTTTCTACGGACGAAGGTTCTTCCGAAGAGGAAGAGAACGACTCGGACATGGAAGAAAAGGGGAAGTACATCGAAAATATCCTCGCGAACAAGAAAACATCTTCGCAGCTCCAGAAAATGATTATGGGTGAGGACGACAAAGAGGACCGGAAGAAAAACCCCAAAAAGGATGATGATGAAACTTCTCAGTATGGATATGGAACGGCAGACTCTACTTTGTGGCTGATTGAGGTTGGCCCAGCAATTCACACCGTCCACGGGAATCAATCCCGAGACCTCGCAAGAGAGGAGATTAAGAGGGAAAGAAGGCGGTTGCAAGAGCAGTTGAGAAGAATTAAAAGGAACCAAGAAAGGCTTCAGAAAGGAATTATTACTCCACCGAAGACGAAAAAACCAAAGCTAAAACCGGATCTCAAATTGAAGTGTGGAGCTTGTGGTCAGGTGGGGCACATGCGTACGAACAAGGCATGCCCCATGTATGCTGGTACTCCTGGGCCAGCGCCGCAACCTGTTATGACGCCGATGTCGGAAGAACAAGAAGAAGAAATGGTGAAAACGGGTGGCATTGAAGAATCGGATGAATTGGTGAATGTGGATGGCACAAAAATCAAACTCTCATCCAAAGTGATGAAGCATGCGGAAGAACTCAAACGTCGCTCTTTGATGCTGAAGGTGCCGAAGGATCAGGGAGGAAGAGGAGGCTCTCGTAGACGCCGTGCTGGAACTGTAGTGCATTGCGACTATCTGAAGAGGAAGAACAAGAGCGTAAACCGACGGAGGATCGACCCTGTCATCACTCTTTCCACGATCTTTGAGGAGATGCTGAATGAAATGCGGGAAATGGCCGACGTGCAGCCATTCCTCTTTCCAGTTAATGCGAAGCAAGTACCGGATTACTACAACGTAGTGCAACACCCGATGGATTTATCCACCATCAGAGATAACCTCCGCCAGAAGAAGTATCAGAGCAGAGAAGAGTTCCTGAGTGACATCAACCAAATCGTCGAAAATTCCAAACTGTATAACGCGGCTTCTGAACGAATGTTGAGTTTGTGCATTGACAGATTCGCCGAAAAAGAAGACAGGTTGATGCGCTTGGAAAAAGCGATCAACCCACTCCTTGATGATAATGATCAGGTTGCTTTTGACTACATCCTGGACAACATCGTCAATACCAAGCTGTTTACCATGCAGGAATCGTGGCCTTTCATGAAGCCCGTAAACAAGAAAAATGTGAAGGACTATTATGAAATCATTCAGCAGCCAATGGACCTTCAGACCATCGCTAAGAAAGTTAAAAACCACAAATATCACAGTCGAAGTGACTTCATGCACGACGTAGAGCTGATTTTGACTAACAGCGAGAAGTACAATGGTTCGGATTCAGCTTTCACTCAGAAGGCAAAAACACTCGTACAGTTCTGCAAAGACAGCCTGGCAGAGTATGGGGATCATCTTGAGGCTTTAGAGAAAAAGATTGCTCTCGCGCAGGAGAGGGCCATGGAACAGGCAGAGGTTGACTCCTTAGGAGATTCTGGGGGGCCTGATGAGGAAGGGAATTACACGTATACCGAACCTGACATTCATTCACAAGCGGGTCAACTGGCCTCTCCCACTGAGCAAGATATAGAATATTATGGAGATGACGAGGAGCATGTAAACGTTGACGTGGAGGCGCAGGAAGAAGGTGAATCCGAAGATCCAAAGATTCCCAAAGGAGTCAAAGCGGGTCAAAGGGGTCGGAAAAGGAGAGAGAGAGAAAATGGATCTGGGATCGAGGAGAATGAACAGGCGATACAAAGGATGCAGGATATGGATGCCATGGGCGTTGGTGCTCCATTGGGCTTGGATATGGTCGGGAAAGAGATGCAGCACAGCATTCAAGAAATGGTACAGTTCGCCGAGGATTATAGGACATATCAC

Transcript

mRNA.BJAM.scaffold8172.19863

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439	Bromodomain	Bromodomain	Domain	Interproscan
PF15288	zf-CCHC_6	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487	Domain	Bromodomain	Interproscan
IPR018359	Conserved_site	Bromodomain, conserved site	Interproscan
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR040240	Family	Transcription initiation factor TFIID subunit 1	Interproscan
IPR041670	Domain	Zinc knuckle	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13900	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004402	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025	Molecular Function	TBP-class protein binding	Interproscan
GO:0051123	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-