Gene detail

Detailed information of mRNA.BJAM.scaffold6745.18567 in Bathynomus jamesi Gene info

Gene ID	Annotation	Contig	Start	End	Strand
mRNA.BJAM.scaffold6745.18567	TREHALOSE-6-PHOSPHATE SYNTHASE	scaffold6745	168476	175243	+

Gene Structure

More details in Jbrowse Sequence

CDS

mRNA.BJAM.scaffold6745.18567

GCAGGAGGATTATGGGTCGTGCCAGGGATATATTCTGATTGTGGGCCTATCCACATTCCGGACCCTGATCCCAATGACTTGTCGCCAACTGCTGGTCTGAAAACATCGCAAGTCATTGCGGTTGACCTTAAAAGGGAAATGTTTGATAAATATTATAATGGGTGCTGCAATGCCTGTTTTTGGCCACTTTTCCATTCTATGCCCGACAGAGCAATTTTCGAAGGAGATAAATGGCAGGCTTACAAAACGGTTAATGAAGAATTTGCTGACCGAACTGTTCAAGCCATTCGGCATCTCAGGAAGGATTCCCCGAACTCTGTTCCTTTAGTGTGGCTTCACGATTATCATTTAATGCTGGCAGCGAACCATATCCGCGAAGCTTGCGATGAGGAAGGATTGGTCATTAAGATGGCCTTCTTTCTTCATATTCCATTTCCCTCGTGGGACATCATGAGACTCTTCCCGTGGGAGGATGAATTGCTCCAAGGAATTTTGGGATGCGACTCTATCGGATTCCATATTCAAGATTATTGCTGGAATTTCATTGATTGTTGTAAGAGAAGGTTGGGATGCCGAGTGGATAGGGAGAAAATGTTAGTAGAACATAATAATAGAACTGTTTCGATCTGCCCTCTCCCCATAAGTATTCCATACGACAGATTTGGGAAGTTGTCGGAAGAAGCTGAAAGCGTATTAGAACTCGGTGATAATAAACAACTCTTGCTGGGTGTTGATCGATTAGATTACACTAAGGGTCTCGTCCATCGAATAAAGGCCTTCGAGTTACTCCTAGAAAAATACCCTGAACATAAAGAAAAAGTTATATTTTTCCAGGTTGCTGTTCCTTCCCGAACGGATGTTGTAGAGTATCAAGATCTGAAAGAAGAGCTCGACCAGCTGATTGGAAGCGTAAATGGAAAGTTTTCCACCCCAAATTGGTCTCCGATTCGCTACATTTATGGTTGTGTCCCTCAGCATCAATTAGCTGCTTTTTATCGTGACGCATCTGTGGCAGTTGTTACGCCCTTAAGAGACGGAATGAACTTGGTTGCCAAAGAATTTGTTGCTTGCCAGACCAGAGAACCCGGAGTTCTTGTTCTGTCGCCTTTTGCTGGGTCAGCCGAATCCATGAAAGAGGCCTTGTTGGTTAATCCTTATGAAACTAACGAATTTGCGGATGTTCTGCATAGAGCTTTAACCTTACCTAAAGATGAGAGAGAATTGAGAATGATAAAACTAAGAAATAGAGAGAAAAGGCACGATGTTAATTACTGGCTTAGATCCTTCTTGATAAGCGTTGATTGCCTAGAAGATGAGAATAAGAAGTTAAGTCACCATGCTCTTCTGGCTGAAGAAGATTTTGGAGTATTTCTTTCCAAGTACGTTACAGAATCTTCCAATTTGGCTATTTTATTAGACTATGATGGGACATTAGCCCCAATAAGGCCTCACCCAGATTTGGCTGTTTTGACTCCGGAGACTAAAGACGTTTTGGAACGTCTCGCCAAATTGCCGGATGTTCATTTGGCTATAATATCCGGTCGATCACTTCAAAATGTGAAAGAAATGGTTGGAATTGAAGGAATAACTTACGCGGGCAATCACGGGTTGGAAATCATACATCCTGATGGAACCATTTTCACTCCTACAATTCCGCACGAATATTCACTTAAATTAGATAGCTTGAGAGAGAAATTGAAGGACTCTTGTAAGCATGGCGCATGGGTGGAAGATAAAGGTTCGGTGATCACATATCATTATATAAAAGTACCGAAAGATGATTTAGGTGATCTATTGCCCAATGCTAAAATGGCCTTCCACGATGCCGGGATAAAATTGAACCATAGTCACAACGCTTTCGAGGGTCGGCCCCCAATACAATGGGACAAAGGAAGAGCGGCAATTCACATTCTGAGAACTTTATTCGGAGTAGATTGGTCGGATCGTGTCTCGACGATATTCGCAGGAGATGACAACACTGACGAAGATGCCATACAGGCTTTGCAAGGCATGGCCATTACTTTCCGAGTGACAAAGTCTCAGAATATAAGAACAGCGGCTACTCATCGCTTACCAAACTCAACCGCTGTTTACAAGATGCTGAGGTGGATTGCGAGAAGACTGGAAAAGAGAGACGCCTCGGAAATGCGAAGAGAATCACTGACTTGA

Transcript

mRNA.BJAM.scaffold6745.18567

GGGCAGGAGGATTATGGGTCGTGCCAGGGATATATTCTGATTGTGGGCCTATCCACATTCCGGACCCTGATCCCAATGACTTGTCGCCAACTGCTGGTCTGAAAACATCGCAAGTCATTGCGGTTGACCTTAAAAGGGAAATGTTTGATAAATATTATAATGGGTGCTGCAATGCCTGTTTTTGGCCACTTTTCCATTCTATGCCCGACAGAGCAATTTTCGAAGGAGATAAATGGCAGGCTTACAAAACGGTTAATGAAGAATTTGCTGACCGAACTGTTCAAGCCATTCGGCATCTCAGGAAGGATTCCCCGAACTCTGTTCCTTTAGTGTGGCTTCACGATTATCATTTAATGCTGGCAGCGAACCATATCCGCGAAGCTTGCGATGAGGAAGGATTGGTCATTAAGATGGCCTTCTTTCTTCATATTCCATTTCCCTCGTGGGACATCATGAGACTCTTCCCGTGGGAGGATGAATTGCTCCAAGGAATTTTGGGATGCGACTCTATCGGATTCCATATTCAAGATTATTGCTGGAATTTCATTGATTGTTGTAAGAGAAGGTTGGGATGCCGAGTGGATAGGGAGAAAATGTTAGTAGAACATAATAATAGAACTGTTTCGATCTGCCCTCTCCCCATAAGTATTCCATACGACAGATTTGGGAAGTTGTCGGAAGAAGCTGAAAGCGTATTAGAACTCGGTGATAATAAACAACTCTTGCTGGGTGTTGATCGATTAGATTACACTAAGGGTCTCGTCCATCGAATAAAGGCCTTCGAGTTACTCCTAGAAAAATACCCTGAACATAAAGAAAAAGTTATATTTTTCCAGGTTGCTGTTCCTTCCCGAACGGATGTTGTAGAGTATCAAGATCTGAAAGAAGAGCTCGACCAGCTGATTGGAAGCGTAAATGGAAAGTTTTCCACCCCAAATTGGTCTCCGATTCGCTACATTTATGGTTGTGTCCCTCAGCATCAATTAGCTGCTTTTTATCGTGACGCATCTGTGGCAGTTGTTACGCCCTTAAGAGACGGAATGAACTTGGTTGCCAAAGAATTTGTTGCTTGCCAGACCAGAGAACCCGGAGTTCTTGTTCTGTCGCCTTTTGCTGGGTCAGCCGAATCCATGAAAGAGGCCTTGTTGGTTAATCCTTATGAAACTAACGAATTTGCGGATGTTCTGCATAGAGCTTTAACCTTACCTAAAGATGAGAGAGAATTGAGAATGATAAAACTAAGAAATAGAGAGAAAAGGCACGATGTTAATTACTGGCTTAGATCCTTCTTGATAAGCGTTGATTGCCTAGAAGATGAGAATAAGAAGTTAAGTCACCATGCTCTTCTGGCTGAAGAAGATTTTGGAGTATTTCTTTCCAAGTACGTTACAGAATCTTCCAATTTGGCTATTTTATTAGACTATGATGGGACATTAGCCCCAATAAGGCCTCACCCAGATTTGGCTGTTTTGACTCCGGAGACTAAAGACGTTTTGGAACGTCTCGCCAAATTGCCGGATGTTCATTTGGCTATAATATCCGGTCGATCACTTCAAAATGTGAAAGAAATGGTTGGAATTGAAGGAATAACTTACGCGGGCAATCACGGGTTGGAAATCATACATCCTGATGGAACCATTTTCACTCCTACAATTCCGCACGAATATTCACTTAAATTAGATAGCTTGAGAGAGAAATTGAAGGACTCTTGTAAGCATGGCGCATGGGTGGAAGATAAAGGTTCGGTGATCACATATCATTATATAAAAGTACCGAAAGATGATTTAGGTGATCTATTGCCCAATGCTAAAATGGCCTTCCACGATGCCGGGATAAAATTGAACCATAGTCACAACGCTTTCGAGGGTCGGCCCCCAATACAATGGGACAAAGGAAGAGCGGCAATTCACATTCTGAGAACTTTATTCGGAGTAGATTGGTCGGATCGTGTCTCGACGATATTCGCAGGAGATGACAACACTGACGAAGATGCCATACAGGCTTTGCAAGGCATGGCCATTACTTTCCGAGTGACAAAGTCTCAGAATATAAGAACAGCGGCTACTCATCGCTTACCAAACTCAACCGCTGTTTACAAGATGCTGAGGTGGATTGCGAGAAGACTGGAAAAGAGAGACGCCTCGGAAATGCGAAGAGAATCACTGACTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00982	Glyco_transf_20	Glycosyltransferase family 20	Family	Interproscan
PF02358	Trehalose_PPase	Trehalose-phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001830	Family	Glycosyl transferase, family 20	Interproscan
IPR003337	Family	Trehalose-phosphatase	Interproscan
IPR006379	Family	HAD-superfamily hydrolase, subfamily IIB	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10788	TREHALOSE-6-PHOSPHATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004805	Molecular Function	trehalose-phosphatase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005946	Cellular Component	alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)	Interproscan
GO:0005992	Biological Process	trehalose biosynthetic process	Interproscan
GO:0070413	Biological Process	trehalose metabolism in response to stress	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-