Gene detail

Detailed information of mRNA.BJAM.scaffold449.3328 in Bathynomus jamesi Gene info

Gene ID	Annotation	Contig	Start	End	Strand
mRNA.BJAM.scaffold449.3328	MYD88	scaffold449	1096790	1112747	-

Gene Structure

More details in Jbrowse Sequence

CDS

mRNA.BJAM.scaffold449.3328

ATGCGCTTTTTGAATGAACAGGAGCAACAGCGTGAAGAGTACATTCAGCAGCTGATTCCGACGGGGTCGTATCTGCCGCGTATCAAGGTGAAGCTTCTAGGGCATTCGGGGTCAGGAAAGTCTGCCCTGGTAGAGTCTTTGAAGGCGGGTTACTTCTCTTCCTTTTTCAGGAGATCAAAGTCAATTACTTCTCCATCCACTACGACAGTTGGGTCATCAAGCACAGCCTCTAATCTAAAGAGACAGCAAGCACTGAAGGGGCATTTCGAGATGGAGTCTCCAGTTACCTCTAGACAAAATTCTCTTGAATTCAACACCTGTGATAATTATACAAAGGGAATTGAGGTTCAGCAGATGAGCGTCTCTGGTGTGGGTGATGTGTCTGTGTGGGATTTTTCGGGACATGAGGCTTATTTTTGCGTTTACGACCACTTCATCGGAAATTCGACTTGCATTCACCTCATCGTTTTCCCTCTTCACCTTCCATTTCACATCCAGCTGCAACAAACCACCTTCTGGCTCTCTTTCCTCCAAGCAAGACTTCCCCCCACGGAACCCTTAGGGTTTAGAGGAAAACCAAATAAAACTTGCAGAGTGGCACTGGTGGCTACTCACGCGGATGTGGCACAGTGCCATAAAAATGCTCAAGGGGAATATATCGCTCCGCAAATGGCACTGCTTCAGGAAAAGTTAATGTCTTTGTACGGTGATATTTTTGACCTGCATGATTCGATCTTCGTGTTGGAAGCGACCGCTCCTGGTTCTGCCGGGATCAAAGCCCTGAAGACGTACGTGTCGAACGTGAAGACTAAATTAACACAGGGTTGGAAGTCGAGCAGCGTGTGTTTCTCCGTGGATCGAACCGCCTCTAACGAAGGCTACACCATCCTGCAACCGGATGTAGCCGAGGAGATACCCCGTGTGACTGGGTTCCTCAACGCCATGGTTGCCCTCCTGCCGGAGTGGCGCAACACCTTGATTGAGTTCCCCGTCGTGTCTTGGCCGCAGTTCATCGACGTGGTCCATGAGCGCGTGAATTGCTTGGCTGGAGATGAGCACTTGAAGGAGGTGGTGACGCAGCTGCAGCTTCTCGGAGAGATCATCTACCTGAAGGCGGGGGCTCAAGACCTGGTAATTTTGGACCCTCCGTGGCTTACCTCTAAACAGATTGGCCTCCTGCTCTCCACGGAATACAGCAATCACGCCAGAGTTACAGGGTGTTACACAGTTGATGATTTCCAAATGAGTTTCCCAGACTGTGACGCCCTGGACCTACTACAAGTCTTGGAAGCTCTCCATTTGTGCACTCAATGTGACAATGAAGGCGAGATAGAGTACGAATTCCCTTGTTTCAATAAAGTTGAGACGCTGGATGGTTTGTGGGACCCATCGGATCCCAGATACGAAGGTGGGGTGTATGCGGGAGTGAGACTTAAATCCCCCGCTCCAACACAGCACCTCCTGCCCCCTATTTACACCAGGATTCAGGTTCAGTTGCGGAGGTCATGGCAGGAATATCCCGAATGCGATACTGACCTCTACCAGTGGCACAAGGGGTCCAAGTTCTGCTCTGGCCCTTTGGAGGCCCTCGTGACCTTAGAGGAGGAGGGGGAAGCAGTGGAGGTGAAGGTCAGAGGACCTCCCAAGGCGTCTTCTGTCGTTTTCTTTTTCATGGAGGATCTTCTCGCAATGATCGATCAAGTAATGGTGGAAATGTGTCCCGGCCTCGTTCTTGAAAAGCACGTCATAAGCTCCCAGCAACTTCGAGAACACGCGCACACTGTTTACGCGTGGTCGCCAGCTGACGTGTACGCGGGGCTTTTGACGGACGGAGTGTCATGCTCGTTAAAGAACCCCTTGACCAGCAGCGGGGAATCTTTTTCACAGGTGGTCTGCCTCGGCTCGCAGGAGGTGCTAAACAGCATCACCATCGGGAGGGACATTCACGTCTCCAGCCTGTGCACCGTCACCGTTCAGAAGCTCGCCTCCCTCCTGGATCCCCCTCACCCAAGGGGATCCGATTGGTGCGTTCTGGCCGTTAAATTAGGCCTTCAGAATTTGTTGCCTTCCCTCGATTCTACAAACGCCAATCCCCCAGGAGGGGTAAAGATGTCACCCACCGCTTCCCTTTTGAATGCCTGGGGGGAGAACCCCAGTTCTACCTTGGGAGCACTGATCGTCATTCTTCGCGAGATGGAGAGAGAAGACACTGTTCTCTCCCTCCTCACCACCTCGCCTCTCTACCTCCTCTCTTCCTCCCAATCCGAAGAAGACTCTCCTTCGGATACCCCTCCCATCTCCTCTGCCTCCGCCACCTCCACTTCTAACCTCTCCAGATGA

Transcript

mRNA.BJAM.scaffold449.3328

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR002052	Conserved_site	DNA methylase, N-6 adenine-specific, conserved site	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR017281	Family	Myeloid differentiation primary response protein MyD88	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15079	MYD88	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002755	Biological Process	MyD88-dependent toll-like receptor signaling pathway	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0032259	Biological Process	methylation	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0070976	Molecular Function	TIR domain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-