Gene detail

Detailed information of mRNA.BJAM.scaffold1359.7624 in Bathynomus jamesi Gene info

Gene ID	Annotation	Contig	Start	End	Strand
mRNA.BJAM.scaffold1359.7624	-	scaffold1359	305938	336081	+

Gene Structure

More details in Jbrowse Sequence

CDS

mRNA.BJAM.scaffold1359.7624

ATGGAGAAGAATGGAACTTCAAAATCATCTAATACATCAGTTTCTCTCTGCAAATCATCAAAAACATGGGACCAAGAAGTTCCTGCTCCTGCTCTTCCATTTTCTGTTGCTGCATTGTTAGTGGCAACATTTGCTGGTCTCTGCTTCTACAACTCTATCTATGGAGATTTTGTGTTTGATGATTCTGAAGCAATTGTGAACAACAATGACATTCGATCAGAGACTCCAATCACCAGCCTTTTTAAAAATGATTTCTGGGGAACAAGACTCACGCATCCATCCAGCCACAATGTAATGAGTCTACAAGTATTTTCTGTTGTGTTTGGGAATGCTCCCAGAGCTGCCTTTCTCTCTAGTGTGTTATTCGCTACTCATCCTGTTCACACAGAAGCCGTTTCCGGCATTGTTGGTCGAGCTGACTTGTTGTGCGCTCTGTTCGTGTTCGTGGCTCTTCTCAGCTACGTGAGAGTCATCAATGAGACCAATTCATGGCAGAAAGAGAGGAAGGAAAAGATGTGGCTCAAGAGGCCCAGAATCATTGATTTTTGCGCCTTTTTAGTCGGCGTTTCTACTGCGATTGCGATGCTGTGCAAGGAAGTTGGAATCACTGCTTTGGGATTGTGTAGCGCTTATGATGTTTTAATGGCACACGGGGGAATGGTTGGTAGAATGATAATGGTTGGCTTTTTGGAGAGAAATCTGGCAGCAGCTTATTGGAAACAAATACCAGAAGGAACTTTCCGGAGTTTGGTCGTTCGTCACCTCTTTCTGGTGGTGTTCGGAATATTTCTTTTGGTGATGCGTTGGATTGTGATGGGCTCCACCGTCCCCAAGTTCATGACCGTTGACAATCCGGCTTCTTTCTTGGACAGCTTTGTTTTCAGGAGCTTGAACTACCAGTACATCTATAGCCTGAATTGCCTCCTCCTCTTCCTGCCCATTTGGCTCTGCTTCGATTGGTCCATGGGCTGCATTCCTGTCATCACCTCTTATTCAGACCCACGGTTACTGGCCTTACCGCTTCTGTGGGGGGGTTTTGGTTGCCTTGTGTATAGAGGAGTCATCAGCAAAGGCAGAACCAGCAGATGTATTCTGATCAGTCTCGCTCTCGGCATCATTCCTTTCTTGCCGGCCAGCAATTTGTTCTTCCGCGTCGGCTTCGTCATCGCTGAAAGAGTTCTCTATATTCCCGTAGCCGGGTTGTGCATTCTTATCGTAGCTGGAATGCGGGAACTGAGGGCGTCCAAACTGCTCGGAAAGAGGAGTCTCCAACTAAGTTACGCGTTCCTGGTGACGGTATTTGTCCTGAGGTGTCGACAAAGGAGCAGAGATTGGCTGACGGAGAACCAGCTCTTCAAGTCAGGGCTGGATGTTTGTCCTCTGAATGCGAAGGTGCATTACAATATGGGAAAAGTGGCAGCTGATGCAGGAGACGTCGTAGAGGCTGTTCGAAGGTACCGAGAGGCGATCAGACTTAATAATGATTACGATCAAGCGATGAACAATTTGGCCAACATTCTCAAGGACCAAGGACATCTGGATGAAGCTCTCCACCTCCTTTTAAGAGCCACTTCGCTTCGTCCAGACTTTGCCGCCGCGTGGATGAATTTAGGCATTATTCAGGCTTCCCTCGGGCTTCACAAAGAAGCTGAAGCGAGCTACTTGACTGCCCTCAAACACAGATCTGTGTACCCTGATTGCTTGTACAATCTGGGTAATCTTTACCTGGACACGGGAGACCACGCCAAGGCTTTGCTCACCTGGACCAACGCCACAATCCTCAAGCCTTCTCTCGCCGTCGCGTGGACAAATATGCTCATTCTGCTGGACTCAGAAGGGCAGTACGAGAAGGCTGTGGAGGTCGCTCACGAAGCTCTGAGACACCTCCCAAATGAACCTGCGCTTCATTTCAACTTGGCGAACACTTTAGGCAAACTGAGCGAATACGAAAACTCCGAGAAGCACTTTTTGATGGCCACCCGCCTAGAACCGACGAATGCTAACTACTGGGCCAATTTAGGTGTCCTTTACCATCGGTGGAAGAAATACGACCTAGCAGAAAAGACTTACCGACACACATTAAGTCTGAGCCCCCTTATGAAGAGTGCCCAGCACAATCTATCCATGCTGCTTAAGTCGATGGGCAAAAGCGGAGTGAACAACAGGTAG

Transcript

mRNA.BJAM.scaffold1359.7624

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07721	TPR_4	Tetratricopeptide repeat	Repeat	Interproscan
PF08409	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13431	TPR_17	Tetratricopeptide repeat	Repeat	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011717	Repeat	Tetratricopeptide TPR-4	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013618	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR052346	Family	Protein O-mannosyl-transferase TMTC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44227	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000030	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0035269	Biological Process	protein O-linked mannosylation	Interproscan
GO:0042802	Molecular Function	identical protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-