Gene detail

Detailed information of mRNA.BJAM.scaffold10511.21325 in Bathynomus jamesi Gene info

Gene ID	Annotation	Contig	Start	End	Strand
mRNA.BJAM.scaffold10511.21325	GUANINE NUCLEOTIDE EXCHANGE FACTOR	scaffold10511	66212	78600	+

Gene Structure

More details in Jbrowse Sequence

CDS

mRNA.BJAM.scaffold10511.21325

ATCAACGACCCCGACGTTCAGCTTCCTTACCCCGGCCAGAGATCTTCCGTCACCCCGAGAACGACTGAAAAACTCCACTTCGCTCTGGACCCCAGGGATACATCCCTGAGGGGGGCCGGTGGTGTGGGTTGCCCCCTCAATCCCTCCACTGGGGTTCCTCCCGAAGGAGCCCCTTTCCACTACCAAACTCACCTACACCTTCAGCAACTTCACCATGATCTACCCGACTTGCTCCGTGGTGGACGATCCAGGGGGTCGGATACGATGTGCCAATCGATCCACTCTCTGGATCACGATGATGTCGATCTTTCGGGACTCATGGAAAGCGTCGTTGACTCTGACGAGGAGGATCTCGTCGAAAATGTGGAGAGCATGTCAGTGCAGGATACGGTCAGGGAGTGCCTGGAGAAGGACCCCAGTGACAGAACTGAAAATGACATAAAGGTTCTCTTGGAATTCACTGAACGACTGTCTGCTTTTGCCAACTTCACCGTCGGCGTCAGGAGGGCCATGTGTCAGGCCATGGTGTTTGCCGTCGTGGAAGAAGCGGATACGATTCTCATGAATGACGGGGAAGAACTTGATTCGTGGAGCGTCATTATCAATGGTTCTGTGGAAGTTACGCATCCAGATGGCTCCGTCCATAAACTCAACCTGGGAGACAGTTTCGGCATCACTCCCACAATGGAGAAGTTGTACCACCGAGGCGTGATGCGCTCCAAAGTGGATGATTGTCAGTTTGTGTGCATTCGACAGAGCGACTACTACAGAATCCTTCGTCAGGGAGAGGAAAACACTAGGAGGCACGAAGAAGATGGTGTTTTAGTTTTGGTCACAGAGAAGAGTCACATCGATACGTGTCACCGGGAGGCCAATATCGTCATTAAGGGAACTCCGGAGAGGTTGATGTTGCATTTGGTGGAAGTTGAGAACATCTTGGATACAACGTACGTCGAAGATTTTCTCCTCACTCATCGGAAGTTCATTAAGAATTCGGTCATAGTCGCAAAGAAACTTCTGGAATGGTTCGAGGACCCAAAGTACCAAGACATCGTGACGCGAGTCTTTCTCAGATGGGTTCAGAGTTACTTCACTGATTTCGAAATGGATCCTGAAATGATGAACTGCTTGGAGCAGTTTGAAGAGGGTCTCCAGCGGAAGGAAATGACGGGGCAGCTGTTCTTCCTCCGTATGGTATGCATGACGAAAGCGAGATCTCGTGTTGTGACCCTGACGAGTCCTAACAGGGACAAACCACTTCAGTTCACCATAGTTGGCAGGAAGAACTTCGGCATTTTCATATCTAGTGTGGAAAGAGGAAGCAAAGCTGAGGAAATTGGTTTAAAAAGAGCAGACCAAATATTAGAAGCGAACGGGCAAAGTTTCACGAATATAACTCGTAATGAAGGCTTAGAGATTCTTACTTCTACTTGTCACTTGGAGATGACCGTCAGGAGTAATTTACATACATATAACGACATGCTTCAAACGCCCGAAAATGCCCACAAAGGCAAGAACCGAAAAACGTCTGATCTTACTGGGAACGGAACGTGCCAGGGTCACTTGGACTTCGTTTCCACTTTAAACCTCAACACGGCCCTCTCCCCTCAACTCCCCCACAACAGGAAAGAAGGGAAAGGCACTTCTATGACCCTCAAAACACACAAATTCAAGGAGTTTCTAGCCAGTATCGTTACCAAGTCTAGTATAATCGAAACCCCTGTTGTATGCAGTGATGATAGTGTCTCTTCTCACTCGAGCACGGGAGGACATCTTTACAGGAGTAGAAGCAATCCTGACCTTTCCAGTACAGATTATGAAGAGAGTAGTAAATCAGAATTCCCAGATCACGTTTTAAAGTCAACGCGATTCCTGCCAGTGCACAAAGAGACAGCGGCGAGGGAAGTTGTGATGCTCGCGCTCAGTCTGTTTAACATGGCGGAACCGTCACAGAAGTACGCCTTGTACGAGGTCTCCGTTACGGAGAGCTCCGCCAATGAACAAAACGTTGTCAAACAAAAAAGACTTCCAGACACACTCTCAAATCTAGCGGAACGGATAGGTCTTAGCAGTCGCTATTACTTAAAGAGCGTAACAAGCTCTCAAAATCTGTGTCCGGATGAAGTAGTAAATGAACTTATTCGCGAATCTCAAGTGAATATCTTGCAGCTAAATTCCGTGGTGGAATTGGCCATTCAACTGACTTTGGAAGACTTTGCCATCTTCAGACAAATTGAACCGACTGAGTATATTGACAGTCTTTTCAAACTCAAGTCTAAATATGGAACGCCAGCTTTATCTAAGTTCGAAGAGATTTCCAACAGGGAACTTTATTGGGTGTGCACCGAAGTTTGCAGCGAGCACAACATTCACAAAAGAGCTAAAATTATTAAACAATTCATTAAGATTGCGAAATACTGCAAAGACCTCAACAATTTCAACTCTATGTTCGCGATTCTTTCTGGTTTGGGGAGTTCGTCGGTTAGCCGGTTACGGCAGACTTGGGCAAGGGTGTCGAGCCGGTACAAGAAAATTTTCAATGACCTTGAAACAGTAATGGATCCCTCACAAAACATGAAGAATTACAGGAAATTGGCAAGCTCTTCCTTTAGTCAGTCCCCAATGATTCCATTTTATCCAATCGTGAAGAAAGATTTACTCTTCTTAAATGAAGGAAACGATGATGAAGTGGACGGACTCATCAACTTCGAAAAACTGCGAACAATTTCAAAGTCAATCAGAAAATTAGGAGAAATGTGTTCCACTAAATACAGTACAGCGATGACGGCGATGAATCAAGGGATCACAGGCAGTCAGCAAAGCTCAACTGTTAAAAGGAGAAAGAAGTCAACCGCTCTGCCCGACAAGAAAAGATGTTTGAAGAGTCCCGAGGCTCAAATGGTTCGCCGTGTGAAAGTGAAAGCGTATCTTAGTCAGTTGAAAGTTATAACTGAAGAGGAGACGCTTATGAGGATGTCTTATGAATGCGAACCACCCACGAGCTCTCACATGAGCGGAAGCACCCACATGGCCGTGGGTTCAGCCTCCTCGTCGTCGTCGTCGTCGGGGCAACAGATCACGAGTGGATCGAACAGTGCCCCTCCAAGCAATCCGCAGACTCGGAGGAGGCACCACTCACCCACTCCTTCCACAGCTTCATCCAAACTCCTCCAATTCTCACACCTCGGAAGGAAAGAAGACTCACGCCAGATTTGGATCCCGATTTTGGATTTTGGATGGGAACTGCCGCCGCTTAATATTCCGTTCGACATTTCAGGTGCGGCTTCACCGACCTCCGAACGCAAAATGTTATCTCTCGCCGCCGCGAGACGACTAAGAAGCCCTACTACGGACCCCGTCCTCCTACCTCTGCCACGGCCCTCACGCAGACCTCCCTTTCTCCAATCCTTCTCCGGAGCCTTACGGAGAGGTCCGGCCCCGCCCATCCCCGTAAATGCCCCCGGTCCCCCCGCGGTTAGAAGCAGTCACGAGCGCTCCCACTCTGACACCCCAGTCAGCTCCGTCGATTTGAACGCGGAGTCTTCCTCCGTCACTTCCTCTCCAGCTTCGCCAACCTACGCAAGTCCCACACTCAGGTAG

Transcript

mRNA.BJAM.scaffold10511.21325

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF00617	RasGEF	RasGEF domain	Family	Interproscan
PF00618	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000159	Domain	Ras-associating domain	Interproscan
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR000651	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR019804	Conserved_site	Ras guanine-nucleotide exchange factor, conserved site	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-