Gene detail

Detailed information of gene29149.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene29149.t1	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	chr10	7898999	7954415	-

Gene Structure

More details in Jbrowse Sequence

CDS

gene29149.t1

ATGAAAATAACTTCGTGCTTTGGTCCTCATGAAAAGGAGAATAACTTAAAAGAACTGTTGGAAGAAGCTGATGAGTCTATAAGAGATTTTGAACTGCGAAGTAAGAAGGAAGATCTGACCAATGGTACCTTGAAGAAAATGAGCGAAGAGCGCGACAGACTTGTTTCCAAAGTGAATAATATCATTATTCTGGGTCACGATGTGGTGGATGGCAAACTGGTGGATGGCAAGAAGGTAGATGAATATGCAACAAAGATAGATGACCTCAAGAATAGAATAGACTTACTCAAAGCATGGCCCTACAAAGAGATTGCTTTAAGCACTTGTAATTCTCAAAACGATTTTGATGACAAAATCTCAGATGCTGAAATAGCAATCTCTAACATGGAACCACGCGTCAAGCAAGCTATTCACAATAAAGATAATAAGGAACTTATTAAAGAGCGCGCTCAACTTTATCGTGACATATACAATCTGATCCGTCTTGGTCGTGATATTTCTGAAGACAAAGGCTTTCACAAGGATAAACATAAGGATTACCAAAGGAGAATGCATAATTTAGAAAGAAGGATGAGAATGTTGATGGGATGGCCCATACTGGAATATACGAGTCTTCTGATGGGATTACCAATAATTCAGCAGGCAAGCACTCGATTTAGTGTCCATGATCGAGTCAGATTCCTTGATCACAAGCTGCAGGAAGCAGAGAAAGACGTTGCAAGCCTTGAACCACGTGTGAAAACAAAGAACCTTAGTCAAAACACAATAGAGGTTTTAACAAAAGAACGCAACGACTTTGAACCAGAGGTTCTTGGAGTCATTGGTCTTGGACTTGAGATGATTAAAGACAACCTAGTTGACATGCACAGAGAGAAAGAGTACTTACAGAGATTTAAAGATTTACAAAATAAGATGAAGACTTTGATGCTATGGCCAATCATCATAACAGCTGATAATCAAGACTACAACAAGTATTTTGAAGATAAGCTGATTGAAGCTGAGACTTCTGTGTGTGAGCTGGAACCACGAATCAAGGAGCCCATCAAGATTGACGCCCAGCAAAAGACATTGATGGAAGAACGCGATGACATAGAAATTAAGGTATACGCTGTTACGAGTCTAGGACGAGGTATGATAGAAGGCAAGTTCTTTGAGGAAGAGAAAGCGAAAGAATATGATCACAGAATCTCTAACCTGGAGCGCGCCATAAAGCTACTGATGATACGGCCTGTCGGACTGCTGGGCAGTAATCAAGATCACGAAAAGTACTTTGAAGACAAGTTGACAGAAGTTGAGACTGCTATTGGTGATTTGAAACCACGAATCATTAAGACAATCGATAGTGAATCACAACAAACGGCTTTGATTAAAGAACGCGATGAGGTTGAAATGAAGGTGTACGTTGTGACCAGCCTTGGAAGAGGTATGATAGAAGACAAGTTCTTTGACCAGAAAAAAGAAAAAGAGTACATCCAGAGAATCGCTAACCTGGAACGAACTATGAAACTACTAATGATGCGGCCAATTGGAGACCAAGACGGGAGATATGATCACAAGAAAACATTTGAGGAAAAGCTCTTCGATGCTGAAACCAATATCGCTCTTTTGGAACGTCGTGTCAAGAAGTCGATCCATAATAAAGATAATAAGGATTTAATCAAAGAACGTGATGATCTTAATCTTATCATATATGATGCAATCCGTCTTGGTCGTGGTATGGCTAAAGCGCAGCTGTTCGACAACGATAAAGTTACAGATTACCAAAAGAGAATGGATGATTTAGAAAGAAGGATGAGGCTACTAATGGGATGGCCCATACTGCCACACACCAGTCTTCTGATGGGAATATTCGAACAAGCAAGCACGAGTTTAAGTGTACACGATCGAGTTCGATTCCTGGATCACAAGCTGCAGGAAGCAGAGAAAGACGTTGAGGATCTTGAGCCACGTGTAAGAGTGAGGAACCTCACAAAGGACAAAGTAGAGGCTCTGACTGATGAACGTGACAACCTGGAGTCAAAGGTTCTTGGGGTCATTGGTCTTGGGTGCCACATGATTAGAGACAATCTGGTCAGTAAGAATAGAGAAAAGGAGTTATTACTCAGGTTTGACAGACTTGAAATAAAAATGAAGGAATTGATGCTTTGGCCAATCATCATAAAATCCAGAGATGCAGAATACAAAAAGTATTTCGAAGGCAAGATGGCAGAGGTTGAGATTTATGTGAGTGAATTGGAACCACGAATCAAGAAGTCGACCAAGGCCGATGCAAAGGATTTACTCAAAGAACGCGATGACATAGATACCAAGGTGTATGCTGTAACGATCCTTGGGCGAGGTATGATAGAAGACAAGTTCTTTGACGAGAACACAGCTGAGAAATACAATGGTAGAATCATTGACCTGGAGCGTGCTATGAAACTACTTATGTTGCGCCCTATTGGGACATCGGACAGTGACACAGATTACTACAAGTATTTTGAAGACAAGCTGACAGACATTGAGACTTCTGTGGGTGATTTAGAACCACGCATCAAGAAGGCGATCGAGGCCGACACACAGAAAACGGGATTGATTAAAGAGCGTATTGAACTTGAACTAAAAGTGTACGCTGTGACCAGTCTTGGACGAGGATTGATTGAGGACCAGCTGTTTGACGAGAGAAAGGGAGTAGAGTACGGCCATAGAATATCTAACCTCGAACATACAATGAAGCTTCTTATGATGCTACCAATCGGTAATAAAGACAGTACCCATGATCACAAGAAGGAATTTGATGAAAAACTCCTGGAAGCTGAAATAGCTGTGTCTGGTATAGAATCACGTGTCAAGAAAGCCATCCACAATAAAGATAATAAGGATCTAATTCATGATCGCGAAGATCTCGATCTCAGTGTGCACAATGTAATGCGTCTTGGTCGAGGTATGGTTGAAGCGAAACTGTTCGACAAAGAGAAGGACAGAGACTACCAAAAGAGAATGGAGAATTTAGAAAGAAGGATAAGATTTTTAATGGGATGGCCAATACTGGAACATACGAGTCTTTTGATGGGATTACCAATAATCCAACAAGCAAGTACCAGACTAAGTGTCCATGATCGAGTTCGATTCCTGGATCACAAGCTACAGGAAGCAGAGAAAGACGTCGAGAACCTTCAGCAACAAGTTAGACAGAAGAATCTCACACAGGATGAAGTAGAGGTCTTAACTAAAGGACGTAAAGATCTAGAGCCGAGGGTTTATGGAGTGATTGGTCTTGGGGTTGAGATGATCCGAGACAATCTTGTCGACATGAATAGAGAGAAAGAGTATTTACAGAGGTTTGAGAACATCGAAAAGAAGATGAAAGAATTGATGCTCTGGCCAATCATCGTGCCTGAGAGTGAAGAGGACTACGACAAGTATTTTGAAGAAAAGATAACACAGGTTGAGTCTGCTGTTGCTGATTTGAAGCAACGAATCAAGAAGCCTATCATGACTGATACACAGCAAACGGCCTTAATCAAGGAACGTGACAATGTGGAAACCGATGTCTACGTTGTAACCAGCCTTGGACGAGGTATGATTGATGACAGGTTCTTTGACTACGACAAAGACAAAGAACACAGCCACAGAATCATTCACTTGGAGCATGCCTTGAAGCTACTACTATTGTGGCCAATCGGAAAACTTCACAGTGTCTATGATCGAGAGAAGTTTCTAGAGGAAAACTTGCATGAAGCAGAGGAAGCCGTCAGCAACTTTGAGCAGCGTGCCAAGAAAAAAGATGTGGACGACACTATCAAGGAAATGGCGAGAGAACGCGATGAACTTGTCTCTAAAGTGGAGGATGTCATTAGTCTTGGTCGTGACATGGTAAATGATCAACTTGAGGACAGCAAGAATACTGATACATACACAGCAAGAATGGATGGCCTGGACATTAAAGTAGGGCTACTGAAATCATGGCCACACGCTGACAGGGAGTCGATTGTGAGCGTATGCACAATGCTACCCTTCAAGCATTTTGATGAGCAGCTCACAGAGATGGAAATGGCTGTCACTCGTGTTGAGCCACGCGTCACAAATGCGATCCACAACAAAGACAATAAGGACTTGATCGAAGAACGCGATGACCTTGATCACACCATACAAGATGTACTCCGTCTGGGTCGAGGAATGGTGGAGGCGCAACTCTTTAACAAGGACAAAGTCATGGATTACCAAAAGAGAATGAATACTTTAGAAAGAAGGATGAGGCTACTAATGGGATGGCCCATACTGGACTATATCAGTCGTCTTATTGGAATACCAATACTGGAACAAACTGGAGAACTGCTCCACTTTGACGACAGAGAAAAGTTCTTGGACGAGAAGCTACACGAAGCAGAGGTGGACGTCCATGAACTAGAACCACGCATCAAAAAGAGAGATCTAATATCTGCAGATAGAGAGGCGTTAACCAGAGAACGCGATAACCTGGAACCAATTGTTGTTGGGGTCGTTGGTCTCGGGCGAAAGATGATTGAAGACAATCTGGTTGACAAGAAGAAAGAAGATGGCTATCGCCAGAGAATAAATGACTTAGAAGCAAGGATGAAGTTGCTGATGTGCTGGTCATTCAATGACGCGAATGAATTAAATGATGCTTTCTTTGAGGAGCGACTTCGGCAAGAAGAGGTCGAGCTGCTAACTTTGGAAGATGGCGCCAAGAAGGAGGATCTCGACGAATCGCAAATTAAGAATTTCATCAAAGAGCGAAGCGACCTTGAAAACAGTGTATACCGTGTAACTAGCCTGGGGCGTGGTATGCTGGAGGATGGAAGCTTCAGTGACGCCAAGGAACAAGAGTACATCGACAGAATGGATGACGTGGAAACGAGGATGCGAATGTTGTTTGACTGGCCCGATGGAACACAAAAACAGAGACCAATACCACAGATATTTAGAGACTATGATATCCATCTAAGGAAATTAGAGATTCAGGTATCACAGTTTGAACAGCGTGCAAAGGTTACTGATCGTGATAGTTTTGATCTGCAGTCAGCCAAAACGATCCTTGATAATATTAAGGCTTTGATATGCGAACGGGATCAACTGGAAATCGACGTCTATGAGGTGATCACAGAAGGAAGAGTTCTTTTACAAGAAGAGGAACTGGAAATTGTAGACATGGCTTTCTACACACGAAGAATGAGTAGACTCGAAGAAAGGATTCGACTTCTTAGGGAATGGCTACAAAGTGAAATGATCAGGTTATTCAATCTATACATAATCCTGATAAAGCAACACTTGGAGCGGCTCCATGATTGGCTAGTTAGGGCTGAGTTGAAGATGGAACTCGAGGATGACATTGGTCCTAACCGAGACGCCGTTGTCAAACAGCTGGAGGAACATATGGAGTTCCACAAAGAAGTTGGTATGTACTCAACAGTGAACATGATCCTGGAGATAGACATGGACGACCCCGGTATTGACGAAGGATTCCATCAAGACGTTCAGACCCTAAGTGAACGCTGGGCATCCGTGTGGAACTGGAGCGAAGAGCGTAAGAATCGCCTGCTATCTGTCATTGCTGAATGGGAGAAATTCCGTGAAGAAGAACAAAACCTGTATCGCTGGTTGGTTGGCAAGGATGAAGCCATTCAAATGTCAGACATGATTGATATTTCAGACGAGGACCAAGTTGATGCAAGTATGGCTATATTAAAGACACTCATCAAAGAAATAAAGGAGCGAGAAGGTCAGATGCTTGAATTCCGAGAAACTGGAGAACAACTCATCTCTGACGCACGATATCATGAAAAAGCAGCTAAGCCAATCAGAGACGAGGTCAATGACTTCGAAGAATGCTGGCGAGTAGAACTGGATCGGGCTCAACGACGTAAAATACAGCTTCAAGAAGCCAGGGAAAAGTTCCTTCAAATGGCGGACTTGAAACGAGATGTCAATGAATGGCTTGTAGAATCTGAGACTCTGATAGACTCTGCTGAAGAAGAACGCGACGAAGAAGAGGAAGAGAAGTTCCAGAACAACATTGAGATGCAATGCGAAGAGCGAGAATTCAACCAGCGCCGTCTAGAGAAAATCAATGCCTTAAACAAAGAGCTATGCCCGTCCATTGAGAAGGATTCATACAAGGAAATCAACTACGTAGTAGACCTTCTTAACAGACGTATGCAGGACGCGAGTGATAAGCTAGAGATGTATCGGGACGATGTACCGTTGATGTCACGTGATGACTGCTGCCTGGTGGGTTATTGGAGGAGAGGTGCGTGGGAGCCTGTGCACGAGCATGAGATTCTACTCAAAGAGTGA

Transcript

gene29149.t1

Protein

gene29149.t1

MKITSCFGPHEKENNLKELLEEADESIRDFELRSKKEDLTNGTLKKMSEERDRLVSKVNNIIILGHDVVDGKLVDGKKVDEYATKIDDLKNRIDLLKAWPYKEIALSTCNSQNDFDDKISDAEIAISNMEPRVKQAIHNKDNKELIKERAQLYRDIYNLIRLGRDISEDKGFHKDKHKDYQRRMHNLERRMRMLMGWPILEYTSLLMGLPIIQQASTRFSVHDRVRFLDHKLQEAEKDVASLEPRVKTKNLSQNTIEVLTKERNDFEPEVLGVIGLGLEMIKDNLVDMHREKEYLQRFKDLQNKMKTLMLWPIIITADNQDYNKYFEDKLIEAETSVCELEPRIKEPIKIDAQQKTLMEERDDIEIKVYAVTSLGRGMIEGKFFEEEKAKEYDHRISNLERAIKLLMIRPVGLLGSNQDHEKYFEDKLTEVETAIGDLKPRIIKTIDSESQQTALIKERDEVEMKVYVVTSLGRGMIEDKFFDQKKEKEYIQRIANLERTMKLLMMRPIGDQDGRYDHKKTFEEKLFDAETNIALLERRVKKSIHNKDNKDLIKERDDLNLIIYDAIRLGRGMAKAQLFDNDKVTDYQKRMDDLERRMRLLMGWPILPHTSLLMGIFEQASTSLSVHDRVRFLDHKLQEAEKDVEDLEPRVRVRNLTKDKVEALTDERDNLESKVLGVIGLGCHMIRDNLVSKNREKELLLRFDRLEIKMKELMLWPIIIKSRDAEYKKYFEGKMAEVEIYVSELEPRIKKSTKADAKDLLKERDDIDTKVYAVTILGRGMIEDKFFDENTAEKYNGRIIDLERAMKLLMLRPIGTSDSDTDYYKYFEDKLTDIETSVGDLEPRIKKAIEADTQKTGLIKERIELELKVYAVTSLGRGLIEDQLFDERKGVEYGHRISNLEHTMKLLMMLPIGNKDSTHDHKKEFDEKLLEAEIAVSGIESRVKKAIHNKDNKDLIHDREDLDLSVHNVMRLGRGMVEAKLFDKEKDRDYQKRMENLERRIRFLMGWPILEHTSLLMGLPIIQQASTRLSVHDRVRFLDHKLQEAEKDVENLQQQVRQKNLTQDEVEVLTKGRKDLEPRVYGVIGLGVEMIRDNLVDMNREKEYLQRFENIEKKMKELMLWPIIVPESEEDYDKYFEEKITQVESAVADLKQRIKKPIMTDTQQTALIKERDNVETDVYVVTSLGRGMIDDRFFDYDKDKEHSHRIIHLEHALKLLLLWPIGKLHSVYDREKFLEENLHEAEEAVSNFEQRAKKKDVDDTIKEMARERDELVSKVEDVISLGRDMVNDQLEDSKNTDTYTARMDGLDIKVGLLKSWPHADRESIVSVCTMLPFKHFDEQLTEMEMAVTRVEPRVTNAIHNKDNKDLIEERDDLDHTIQDVLRLGRGMVEAQLFNKDKVMDYQKRMNTLERRMRLLMGWPILDYISRLIGIPILEQTGELLHFDDREKFLDEKLHEAEVDVHELEPRIKKRDLISADREALTRERDNLEPIVVGVVGLGRKMIEDNLVDKKKEDGYRQRINDLEARMKLLMCWSFNDANELNDAFFEERLRQEEVELLTLEDGAKKEDLDESQIKNFIKERSDLENSVYRVTSLGRGMLEDGSFSDAKEQEYIDRMDDVETRMRMLFDWPDGTQKQRPIPQIFRDYDIHLRKLEIQVSQFEQRAKVTDRDSFDLQSAKTILDNIKALICERDQLEIDVYEVITEGRVLLQEEELEIVDMAFYTRRMSRLEERIRLLREWLQSEMIRLFNLYIILIKQHLERLHDWLVRAELKMELEDDIGPNRDAVVKQLEEHMEFHKEVGMYSTVNMILEIDMDDPGIDEGFHQDVQTLSERWASVWNWSEERKNRLLSVIAEWEKFREEEQNLYRWLVGKDEAIQMSDMIDISDEDQVDASMAILKTLIKEIKEREGQMLEFRETGEQLISDARYHEKAAKPIRDEVNDFEECWRVELDRAQRRKIQLQEAREKFLQMADLKRDVNEWLVESETLIDSAEEERDEEEEEKFQNNIEMQCEEREFNQRRLEKINALNKELCPSIEKDSYKEINYVVDLLNRRMQDASDKLEMYRDDVPLMSRDDCCLVGYWRRGAWEPVHEHEILLKE

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003786	Molecular Function	actin lateral binding	Interproscan
GO:0005826	Cellular Component	actomyosin contractile ring	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054	Cellular Component	cell junction	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0032432	Cellular Component	actin filament bundle	Interproscan
GO:0042995	Cellular Component	cell projection	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0051017	Biological Process	actin filament bundle assembly	Interproscan
GO:1903478	Biological Process	obsolete actin filament bundle convergence involved in mitotic contractile ring assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-