Gene detail

Detailed information of gene27944.t1 in Actinoscyphia liui

Genomic Location: chr9:6337044...6351887
NR annotation: XP_020902775.1, CCR4-NOT transcription complex subunit 6-like [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene27944.t1

GTCCGCCATGTTGGTTCGCTTATTTTTTCGCTGGCTAAAGTCATGATTTTCAGCAATGCCGAAGGACAAACATGAAAGTAACGGATATCGCAGAAACTACGCTATTATGAGCTCCGAAGATGTGGCGGCGGGAAAGAAATCGCATTGGACAGAACTCGAAATTACGGCTCCGATCCGTAATTTGAGTCCGAACTTATGGCAGCTCGAATTTTTAACTGCATTATTTTTAAACGATAATAACCTTACTAGAATCCCGCCAGATATTTCAAGACTTACAAATCTAAGACACCTCGATGTTTCGTCCAACAAATTGCGAAGTTTGCCCGCAGAAATGGGAGATATGGTCACATTACGTGAGCTCCTTTTATGCAATAATGGACTCCGAAATTTGCCCAACGAACTGGGAAAACTTTTTCAGCTGCAAAAACTTGGACTAAGTGGGAATCCTTTGCCGCAGCAAATGTTAAATTTATATGCAGAAACCAATGGTACATCGAAATTGTTAACCTATATGCTGGACCACTTAGAAGTATGTCCAAGACCACCTGATCGCCACTGGATATCACTAACACACAATCAACCAAGACAACCAAATGGGAGTTTTATTGTGATGTGTTTTAATGTGCTGTGCGACAAGTACTGTACAAGGCAGCTGTATGGTTACTGCCCATCATGGGCACTGGATTGGGAGTATAGAAAAGTGGCAATTATGAAAGAAGTTGTACTTTATGGAGCTGATATTGTCAGTCTTCAGGAGGTGGGTACAGAGCAGTTCTATCATTATTTCTTGCCTGAACTCCAACAACAAGGCTATGAAGGAATCTTCAGTGCAAAGTCAAGGGCAAGAACCATGTCTGAAGATGAGAGGAAGCATGTGGATGGCTGTGCAATATTCTACAGAAAGACCAAATTCACACTTATAAAGGAATACCTCACGGAGTTCAACCAAATTGCAATGGCCAATGCACAAGGATCAGAAGACATGCTTAATAGAGTGATGACAAAGGATAACATAGGAATCGCTGCATTATTAGAGCTGAAAGATTCAGGGTACATGGGTTATAATGGTGGCCAGCAGGTCTTGGTATCAAATGCACACATTCACTGGGATCCAGAGTTCCGAGATGTCAAGTTAATCCAGACAGTGATGTTGATGAATGAGTTGACGAGAATAATGAAGGAAGCAGTGCCTGGCTTTCAACCACATGGAGTCAAGAATGGCACCACGCCACCCAAACCCATCCCTGTTGTCATATGTGGAGATTTCAACTCACTACCTGACAGTGGTGTTATTGAGTTCTTGGATAAGGGAAGAATAGCTGTAGACCATCCCGACTTCCAAGAGATGCGTTACGAAGGCTTCCTCTCGAGGCTAAGCAATGGCAATGGTAAAAATAGTGAGAAGTGTGCAGAGTTAACGCACGGTTTAAAGTTAAAGAAAGCCTACGAGGGAGAGAACCAGATGCCATACACCAATCTTACATACGACTTCAGGGGCGTCATAGATTATCTTTACTACTCCTACAACAGCCTAACGCCGCAAGGTCTTTTGCAGTCAGTGGATCCAGAATATATCAAAGCGAATAAAATCACAGGGTGGCCTCATCCACACTTCCCATCAGATCACCAGGCACTGTTAGTGGAGTTTGAAGTGTTTGGTACAGTTCCAAGGTTTGGGTTCTCATCAAATGGCAATAGTCTTCCAAGGTAGCAAGGTGCGACACTCGTCAACCAGATGCCAGATAAGTGTAAATTTGTAACTATAGAGTGTAAAAAAGGCGACTTTAGCCCAGATTTTATGAGTCCGTTAAACACCCACACCCACCTGTTATACTTGCATACCTGTGCCGATGGGTGCACTATTGTATTTTAAATAACACTGTCGTTATTATTTGACGTATATAATGCATGTGTTTTCCATTGCCTTGGTGCTACAAGATGTGTAGCGTTCCGCTATTGCGATAGCATTTTTTTTGCTACGTAGGAATTAATTTTTATTCGATTTTTTAACTTGACGGGTTTGTTATTTTATTGTGTGGTAGAAGTAGTTATTTGTTTTCGATAATATTATACAGCATGCTTACATGTATGTAATTATTACTGTTAATTTCATGCCTTTGAATAAAGGTTTCGTATGTCGTTTCTAAGTTTTATAATGGGAAAATTGGTTTTCAAGTTTTTTTCTTTATTAGTTAGTGCATTGCATGCTGCTTGTCCAATCCCAATCCATTTATATCTTTTAGCACCAACGGTACCCTAACACTGCATATCAGCTTGATTCTTAGTGAATGAAATATCTTGTTATTATATGTGAATTCTTTACTAATATGACTAGAACTCTAGCATAACTTCAGGGTTTTTTCTGGCATTTTGCAATAATATTTTGGTAGATTCAATCTGCATGCAGGATTGATACAATCCAGTTTATCTAATAATAAGCTTATCTTACAATTATTGGGCACTTTAATATTTATAGCTAATAATATCTTGATAATATCCCAAGGATGATTACTAATGACACATATCATTGGTAACATGATAATGAGGATAATGTTGGTGATCATCATCATCATTATCAATGTCATCATCGT

Protein

Uniprot

Uniprot term	Description
A2BHJ4	CCR4-NOT transcription complex subunit 6-like OS=Danio rerio OX=7955 GN=cnot6l PE=2 SV=1
Q96LI5	CCR4-NOT transcription complex subunit 6-like OS=Homo sapiens OX=9606 GN=CNOT6L PE=1 SV=2
Q8VEG6	CCR4-NOT transcription complex subunit 6-like OS=Mus musculus OX=10090 GN=Cnot6l PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR050410	Family	CCR4/nocturin mRNA turnover and transcription	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12121	CARBON CATABOLITE REPRESSOR PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000289	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0004535	Molecular Function	poly(A)-specific ribonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0030014	Cellular Component	CCR4-NOT complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12603	CNOT6, CCR4; CCR4-NOT transcription complex subunit 6	EC:3.1.13.4	Messenger RNA biogenesis	ko03019	deepkoala