| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| gene27438.t1 | NUCLEOPORIN NUP188 HOMOLOG | chr8 | 23058562 | 23079885 | + |
| CDS | |||||
| gene27438.t1 | |||||
| Transcript |
| gene27438.t1 |
| Protein |
| gene27438.t1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|PHD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00628 | PHD | PHD-finger | Domain | Interproscan |
| PF10487 | Nup188_N | Nucleoporin Nup188, N-terminal | Repeat | Interproscan |
| PF14529 | Exo_endo_phos_2 | Endonuclease-reverse transcriptase | Domain | Interproscan |
| PF21093 | Nup188_N-subdom_III | Nucleoporin Nup188, N-terminal subdomain III | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001965 | Domain | Zinc finger, PHD-type | Interproscan |
| IPR005135 | Domain | Endonuclease/exonuclease/phosphatase | Interproscan |
| IPR011011 | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR018864 | Domain | Nucleoporin Nup188, N-terminal | Interproscan |
| IPR019786 | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| IPR019787 | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR036691 | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR044840 | Family | Nucleoporin Nup188 | Interproscan |
| IPR048883 | Domain | Nucleoporin Nup188, N-terminal subdomain III | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR31431 | NUCLEOPORIN NUP188 HOMOLOG | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0006405 | Biological Process | RNA export from nucleus | Interproscan |
| GO:0006606 | Biological Process | protein import into nucleus | Interproscan |
| GO:0017056 | Molecular Function | structural constituent of nuclear pore | Interproscan |
| GO:0044611 | Cellular Component | nuclear pore inner ring | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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